Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06123

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06122 and MPMX19_06123 are separated by 67 nucleotidesMPMX19_06123 and MPMX19_06124 are separated by 324 nucleotides MPMX19_06122: MPMX19_06122 - Acetylornithine deacetylase, at 307,389 to 308,717 _06122 MPMX19_06123: MPMX19_06123 - hypothetical protein, at 308,785 to 309,483 _06123 MPMX19_06124: MPMX19_06124 - Chloramphenicol acetyltransferase, at 309,808 to 310,443 _06124 Position (kb) 308 309 310Strain fitness (log2 ratio) -2 -1 0 1at 307.938 kb on + strand, within MPMX19_06122at 307.938 kb on + strand, within MPMX19_06122at 308.284 kb on + strand, within MPMX19_06122at 308.284 kb on + strand, within MPMX19_06122at 308.284 kb on + strand, within MPMX19_06122at 308.284 kb on + strand, within MPMX19_06122at 308.284 kb on + strand, within MPMX19_06122at 308.284 kb on + strand, within MPMX19_06122at 308.284 kb on + strand, within MPMX19_06122at 308.285 kb on - strand, within MPMX19_06122at 308.285 kb on - strand, within MPMX19_06122at 308.285 kb on - strand, within MPMX19_06122at 308.285 kb on - strand, within MPMX19_06122at 308.285 kb on - strand, within MPMX19_06122at 308.285 kb on - strand, within MPMX19_06122at 308.302 kb on - strand, within MPMX19_06122at 308.302 kb on - strand, within MPMX19_06122at 308.388 kb on + strand, within MPMX19_06122at 308.389 kb on - strand, within MPMX19_06122at 308.389 kb on - strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.571 kb on + strand, within MPMX19_06122at 308.572 kb on - strand, within MPMX19_06122at 308.786 kb on + strandat 308.786 kb on + strandat 308.786 kb on + strandat 308.787 kb on - strandat 308.787 kb on - strandat 308.787 kb on - strandat 308.787 kb on - strandat 308.849 kb on + strandat 308.849 kb on + strandat 309.272 kb on + strand, within MPMX19_06123at 309.275 kb on + strand, within MPMX19_06123at 309.275 kb on + strand, within MPMX19_06123at 309.634 kb on + strandat 309.634 kb on + strandat 309.634 kb on + strandat 309.634 kb on + strandat 309.635 kb on - strandat 309.635 kb on - strandat 309.635 kb on - strandat 309.635 kb on - strandat 309.635 kb on - strandat 309.635 kb on - strandat 309.638 kb on + strandat 309.638 kb on + strandat 309.638 kb on + strandat 309.638 kb on + strandat 309.639 kb on - strandat 309.639 kb on - strandat 309.639 kb on - strandat 309.639 kb on - strandat 309.639 kb on - strandat 309.665 kb on + strandat 309.665 kb on + strandat 309.665 kb on + strandat 309.665 kb on + strandat 309.665 kb on + strandat 309.665 kb on + strandat 309.665 kb on + strandat 309.666 kb on - strandat 309.666 kb on - strandat 309.666 kb on - strandat 309.666 kb on - strandat 309.666 kb on - strandat 309.666 kb on - strandat 309.666 kb on - strandat 309.666 kb on - strandat 309.775 kb on + strandat 309.775 kb on + strandat 309.775 kb on + strandat 309.776 kb on - strandat 309.889 kb on + strand, within MPMX19_06124at 309.889 kb on + strand, within MPMX19_06124at 309.889 kb on + strand, within MPMX19_06124at 309.889 kb on + strand, within MPMX19_06124at 309.890 kb on - strand, within MPMX19_06124at 309.890 kb on - strand, within MPMX19_06124at 309.890 kb on - strand, within MPMX19_06124at 309.890 kb on - strand, within MPMX19_06124at 309.895 kb on + strand, within MPMX19_06124at 309.895 kb on + strand, within MPMX19_06124at 309.895 kb on + strand, within MPMX19_06124at 309.895 kb on + strand, within MPMX19_06124at 309.895 kb on + strand, within MPMX19_06124at 309.896 kb on - strand, within MPMX19_06124at 309.896 kb on - strand, within MPMX19_06124at 309.896 kb on - strand, within MPMX19_06124at 309.896 kb on - strand, within MPMX19_06124at 309.896 kb on - strand, within MPMX19_06124at 309.896 kb on - strand, within MPMX19_06124at 309.896 kb on - strand, within MPMX19_06124at 309.896 kb on - strand, within MPMX19_06124at 309.898 kb on + strand, within MPMX19_06124at 309.898 kb on + strand, within MPMX19_06124at 309.898 kb on + strand, within MPMX19_06124at 309.898 kb on + strand, within MPMX19_06124at 309.899 kb on - strand, within MPMX19_06124at 309.899 kb on - strand, within MPMX19_06124at 309.899 kb on - strand, within MPMX19_06124at 309.899 kb on - strand, within MPMX19_06124at 309.910 kb on + strand, within MPMX19_06124at 309.910 kb on + strand, within MPMX19_06124at 309.910 kb on + strand, within MPMX19_06124at 309.910 kb on + strand, within MPMX19_06124at 309.910 kb on + strand, within MPMX19_06124at 309.910 kb on + strand, within MPMX19_06124at 309.910 kb on + strand, within MPMX19_06124at 309.911 kb on - strand, within MPMX19_06124at 309.911 kb on - strand, within MPMX19_06124at 309.911 kb on - strand, within MPMX19_06124at 309.911 kb on - strand, within MPMX19_06124at 309.911 kb on - strand, within MPMX19_06124at 309.911 kb on - strand, within MPMX19_06124at 309.911 kb on - strand, within MPMX19_06124at 309.911 kb on - strand, within MPMX19_06124at 309.911 kb on - strand, within MPMX19_06124at 310.117 kb on + strand, within MPMX19_06124at 310.252 kb on + strand, within MPMX19_06124at 310.252 kb on + strand, within MPMX19_06124at 310.252 kb on + strand, within MPMX19_06124at 310.252 kb on + strand, within MPMX19_06124at 310.252 kb on + strand, within MPMX19_06124at 310.252 kb on + strand, within MPMX19_06124at 310.253 kb on - strand, within MPMX19_06124at 310.253 kb on - strand, within MPMX19_06124at 310.253 kb on - strand, within MPMX19_06124at 310.253 kb on - strand, within MPMX19_06124

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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307,938 + MPMX19_06122 0.41 -2.0
307,938 + MPMX19_06122 0.41 +0.5
308,284 + MPMX19_06122 0.67 +0.9
308,284 + MPMX19_06122 0.67 +0.8
308,284 + MPMX19_06122 0.67 +0.6
308,284 + MPMX19_06122 0.67 -0.3
308,284 + MPMX19_06122 0.67 -0.7
308,284 + MPMX19_06122 0.67 +0.2
308,284 + MPMX19_06122 0.67 -1.0
308,285 - MPMX19_06122 0.67 -0.3
308,285 - MPMX19_06122 0.67 -0.0
308,285 - MPMX19_06122 0.67 -0.4
308,285 - MPMX19_06122 0.67 -0.0
308,285 - MPMX19_06122 0.67 +0.2
308,285 - MPMX19_06122 0.67 -0.9
308,302 - MPMX19_06122 0.69 -0.2
308,302 - MPMX19_06122 0.69 -0.7
308,388 + MPMX19_06122 0.75 +0.7
308,389 - MPMX19_06122 0.75 +0.4
308,389 - MPMX19_06122 0.75 +0.1
308,520 + MPMX19_06122 0.85 +0.7
308,520 + MPMX19_06122 0.85 -0.9
308,520 + MPMX19_06122 0.85 +1.1
308,520 + MPMX19_06122 0.85 -2.1
308,520 + MPMX19_06122 0.85 -0.1
308,520 + MPMX19_06122 0.85 +0.5
308,520 + MPMX19_06122 0.85 -1.8
308,520 + MPMX19_06122 0.85 -0.5
308,520 + MPMX19_06122 0.85 -0.7
308,520 + MPMX19_06122 0.85 -0.1
308,520 + MPMX19_06122 0.85 +0.9
308,521 - MPMX19_06122 0.85 -1.8
308,521 - MPMX19_06122 0.85 -2.1
308,521 - MPMX19_06122 0.85 -0.4
308,521 - MPMX19_06122 0.85 -0.6
308,521 - MPMX19_06122 0.85 -1.1
308,521 - MPMX19_06122 0.85 +0.4
308,521 - MPMX19_06122 0.85 -1.6
308,521 - MPMX19_06122 0.85 -0.1
308,521 - MPMX19_06122 0.85 -0.8
308,521 - MPMX19_06122 0.85 -0.4
308,521 - MPMX19_06122 0.85 -1.0
308,521 - MPMX19_06122 0.85 -1.0
308,521 - MPMX19_06122 0.85 -0.2
308,521 - MPMX19_06122 0.85 -0.1
308,571 + MPMX19_06122 0.89 -0.6
308,572 - MPMX19_06122 0.89 +0.9
308,786 + -1.3
308,786 + -0.5
308,786 + -1.2
308,787 - +1.1
308,787 - +0.3
308,787 - -1.8
308,787 - -1.2
308,849 + -0.7
308,849 + -0.7
309,272 + MPMX19_06123 0.70 -0.8
309,275 + MPMX19_06123 0.70 -1.1
309,275 + MPMX19_06123 0.70 -0.9
309,634 + +0.3
309,634 + +0.4
309,634 + +0.9
309,634 + -1.0
309,635 - -0.2
309,635 - -1.5
309,635 - -0.3
309,635 - -0.1
309,635 - -0.5
309,635 - -0.0
309,638 + +0.1
309,638 + -2.3
309,638 + -1.8
309,638 + +1.3
309,639 - -1.3
309,639 - -2.0
309,639 - +0.6
309,639 - -1.1
309,639 - +0.7
309,665 + +0.6
309,665 + -0.3
309,665 + +1.0
309,665 + +0.1
309,665 + -0.5
309,665 + -1.7
309,665 + -1.0
309,666 - +0.0
309,666 - +1.1
309,666 - -0.5
309,666 - -2.4
309,666 - -0.7
309,666 - -2.4
309,666 - -1.0
309,666 - -0.9
309,775 + +0.4
309,775 + -1.1
309,775 + +0.5
309,776 - -0.2
309,889 + MPMX19_06124 0.13 -0.3
309,889 + MPMX19_06124 0.13 +0.5
309,889 + MPMX19_06124 0.13 -1.4
309,889 + MPMX19_06124 0.13 -0.5
309,890 - MPMX19_06124 0.13 -1.5
309,890 - MPMX19_06124 0.13 -0.8
309,890 - MPMX19_06124 0.13 -1.6
309,890 - MPMX19_06124 0.13 -1.1
309,895 + MPMX19_06124 0.14 +0.5
309,895 + MPMX19_06124 0.14 -0.2
309,895 + MPMX19_06124 0.14 -0.2
309,895 + MPMX19_06124 0.14 -1.3
309,895 + MPMX19_06124 0.14 -1.1
309,896 - MPMX19_06124 0.14 +0.4
309,896 - MPMX19_06124 0.14 +0.5
309,896 - MPMX19_06124 0.14 -0.5
309,896 - MPMX19_06124 0.14 +0.7
309,896 - MPMX19_06124 0.14 -0.0
309,896 - MPMX19_06124 0.14 -0.3
309,896 - MPMX19_06124 0.14 -0.3
309,896 - MPMX19_06124 0.14 -1.0
309,898 + MPMX19_06124 0.14 +1.7
309,898 + MPMX19_06124 0.14 +0.5
309,898 + MPMX19_06124 0.14 -0.3
309,898 + MPMX19_06124 0.14 -0.6
309,899 - MPMX19_06124 0.14 -0.9
309,899 - MPMX19_06124 0.14 -0.4
309,899 - MPMX19_06124 0.14 +0.2
309,899 - MPMX19_06124 0.14 -0.7
309,910 + MPMX19_06124 0.16 -0.8
309,910 + MPMX19_06124 0.16 -0.1
309,910 + MPMX19_06124 0.16 -0.3
309,910 + MPMX19_06124 0.16 -0.9
309,910 + MPMX19_06124 0.16 -0.0
309,910 + MPMX19_06124 0.16 -1.9
309,910 + MPMX19_06124 0.16 -0.9
309,911 - MPMX19_06124 0.16 -0.5
309,911 - MPMX19_06124 0.16 -0.6
309,911 - MPMX19_06124 0.16 -1.1
309,911 - MPMX19_06124 0.16 -0.6
309,911 - MPMX19_06124 0.16 -1.0
309,911 - MPMX19_06124 0.16 +0.1
309,911 - MPMX19_06124 0.16 +0.2
309,911 - MPMX19_06124 0.16 +1.1
309,911 - MPMX19_06124 0.16 -1.3
310,117 + MPMX19_06124 0.49 +0.6
310,252 + MPMX19_06124 0.70 -1.9
310,252 + MPMX19_06124 0.70 -1.2
310,252 + MPMX19_06124 0.70 -0.1
310,252 + MPMX19_06124 0.70 -2.4
310,252 + MPMX19_06124 0.70 -0.3
310,252 + MPMX19_06124 0.70 -1.4
310,253 - MPMX19_06124 0.70 -0.3
310,253 - MPMX19_06124 0.70 +1.3
310,253 - MPMX19_06124 0.70 -0.8
310,253 - MPMX19_06124 0.70 -0.4

Or see this region's nucleotide sequence