Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06092

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06091 and MPMX19_06092 are separated by 82 nucleotidesMPMX19_06092 and MPMX19_06093 are separated by 40 nucleotidesMPMX19_06093 and MPMX19_06094 overlap by 11 nucleotides MPMX19_06091: MPMX19_06091 - Glycolate permease GlcA, at 270,077 to 271,753 _06091 MPMX19_06092: MPMX19_06092 - hypothetical protein, at 271,836 to 274,697 _06092 MPMX19_06093: MPMX19_06093 - Lactate utilization protein A, at 274,738 to 275,487 _06093 MPMX19_06094: MPMX19_06094 - Lactate utilization protein B, at 275,477 to 276,901 _06094 Position (kb) 271 272 273 274 275Strain fitness (log2 ratio) -2 -1 0 1at 270.951 kb on + strand, within MPMX19_06091at 270.951 kb on + strand, within MPMX19_06091at 270.951 kb on + strand, within MPMX19_06091at 270.951 kb on + strand, within MPMX19_06091at 270.951 kb on + strand, within MPMX19_06091at 270.951 kb on + strand, within MPMX19_06091at 270.951 kb on + strand, within MPMX19_06091at 270.951 kb on + strand, within MPMX19_06091at 270.951 kb on + strand, within MPMX19_06091at 270.952 kb on - strand, within MPMX19_06091at 270.952 kb on - strand, within MPMX19_06091at 270.952 kb on - strand, within MPMX19_06091at 270.952 kb on - strand, within MPMX19_06091at 270.952 kb on - strand, within MPMX19_06091at 270.952 kb on - strand, within MPMX19_06091at 270.952 kb on - strand, within MPMX19_06091at 270.952 kb on - strand, within MPMX19_06091at 270.952 kb on - strand, within MPMX19_06091at 270.952 kb on - strand, within MPMX19_06091at 270.980 kb on + strand, within MPMX19_06091at 270.981 kb on - strand, within MPMX19_06091at 270.981 kb on - strand, within MPMX19_06091at 270.981 kb on - strand, within MPMX19_06091at 271.175 kb on + strand, within MPMX19_06091at 271.175 kb on + strand, within MPMX19_06091at 271.175 kb on + strand, within MPMX19_06091at 271.175 kb on + strand, within MPMX19_06091at 271.175 kb on + strand, within MPMX19_06091at 271.176 kb on - strand, within MPMX19_06091at 271.176 kb on - strand, within MPMX19_06091at 271.176 kb on - strand, within MPMX19_06091at 271.176 kb on - strand, within MPMX19_06091at 271.176 kb on - strand, within MPMX19_06091at 271.176 kb on - strand, within MPMX19_06091at 271.250 kb on + strand, within MPMX19_06091at 271.251 kb on - strand, within MPMX19_06091at 271.251 kb on - strand, within MPMX19_06091at 271.277 kb on + strand, within MPMX19_06091at 271.278 kb on - strand, within MPMX19_06091at 271.278 kb on - strand, within MPMX19_06091at 271.292 kb on + strand, within MPMX19_06091at 271.292 kb on + strand, within MPMX19_06091at 271.293 kb on - strand, within MPMX19_06091at 271.293 kb on - strand, within MPMX19_06091at 271.293 kb on - strand, within MPMX19_06091at 271.293 kb on - strand, within MPMX19_06091at 271.343 kb on + strand, within MPMX19_06091at 271.343 kb on + strand, within MPMX19_06091at 271.344 kb on - strand, within MPMX19_06091at 271.344 kb on - strand, within MPMX19_06091at 271.344 kb on - strand, within MPMX19_06091at 271.344 kb on - strand, within MPMX19_06091at 271.409 kb on + strand, within MPMX19_06091at 271.715 kb on + strandat 271.715 kb on + strandat 271.715 kb on + strandat 271.715 kb on + strandat 271.715 kb on + strandat 271.715 kb on + strandat 271.715 kb on + strandat 271.715 kb on + strandat 271.715 kb on + strandat 271.716 kb on - strandat 271.716 kb on - strandat 271.716 kb on - strandat 271.716 kb on - strandat 271.716 kb on - strandat 271.716 kb on - strandat 271.716 kb on - strandat 271.716 kb on - strandat 271.716 kb on - strandat 271.851 kb on + strandat 271.851 kb on + strandat 271.851 kb on + strandat 271.851 kb on + strandat 271.852 kb on - strandat 271.852 kb on - strandat 271.852 kb on - strandat 271.852 kb on - strandat 271.929 kb on + strandat 271.930 kb on - strandat 271.950 kb on + strandat 271.951 kb on - strandat 272.316 kb on + strand, within MPMX19_06092at 272.316 kb on + strand, within MPMX19_06092at 272.317 kb on - strand, within MPMX19_06092at 272.317 kb on - strand, within MPMX19_06092at 272.517 kb on + strand, within MPMX19_06092at 272.541 kb on + strand, within MPMX19_06092at 272.541 kb on + strand, within MPMX19_06092at 272.541 kb on + strand, within MPMX19_06092at 272.542 kb on - strand, within MPMX19_06092at 272.542 kb on - strand, within MPMX19_06092at 272.542 kb on - strand, within MPMX19_06092at 272.542 kb on - strand, within MPMX19_06092at 272.918 kb on + strand, within MPMX19_06092at 272.919 kb on - strand, within MPMX19_06092at 273.103 kb on - strand, within MPMX19_06092at 273.240 kb on + strand, within MPMX19_06092at 273.240 kb on + strand, within MPMX19_06092at 273.241 kb on - strand, within MPMX19_06092at 273.241 kb on - strand, within MPMX19_06092at 273.321 kb on + strand, within MPMX19_06092at 273.321 kb on + strand, within MPMX19_06092at 273.322 kb on - strand, within MPMX19_06092at 273.322 kb on - strand, within MPMX19_06092at 273.322 kb on - strand, within MPMX19_06092at 273.322 kb on - strand, within MPMX19_06092at 273.322 kb on - strand, within MPMX19_06092at 273.606 kb on + strand, within MPMX19_06092at 273.607 kb on - strand, within MPMX19_06092at 273.607 kb on - strand, within MPMX19_06092at 273.607 kb on - strand, within MPMX19_06092at 273.607 kb on - strand, within MPMX19_06092at 273.607 kb on - strand, within MPMX19_06092at 273.607 kb on - strand, within MPMX19_06092at 273.612 kb on + strand, within MPMX19_06092at 273.613 kb on - strand, within MPMX19_06092at 273.758 kb on + strand, within MPMX19_06092at 273.758 kb on + strand, within MPMX19_06092at 273.758 kb on + strand, within MPMX19_06092at 273.758 kb on + strand, within MPMX19_06092at 273.759 kb on - strand, within MPMX19_06092at 273.759 kb on - strand, within MPMX19_06092at 273.759 kb on - strand, within MPMX19_06092at 273.759 kb on - strand, within MPMX19_06092at 273.759 kb on - strand, within MPMX19_06092at 273.966 kb on + strand, within MPMX19_06092at 273.966 kb on + strand, within MPMX19_06092at 273.966 kb on + strand, within MPMX19_06092at 273.966 kb on + strand, within MPMX19_06092at 273.967 kb on - strand, within MPMX19_06092at 273.967 kb on - strand, within MPMX19_06092at 273.967 kb on - strand, within MPMX19_06092at 274.081 kb on - strand, within MPMX19_06092at 274.127 kb on + strand, within MPMX19_06092at 274.127 kb on + strand, within MPMX19_06092at 274.127 kb on + strand, within MPMX19_06092at 274.127 kb on + strand, within MPMX19_06092at 274.127 kb on + strand, within MPMX19_06092at 274.127 kb on + strand, within MPMX19_06092at 274.127 kb on + strand, within MPMX19_06092at 274.127 kb on + strand, within MPMX19_06092at 274.127 kb on + strand, within MPMX19_06092at 274.128 kb on - strand, within MPMX19_06092at 274.128 kb on - strand, within MPMX19_06092at 274.128 kb on - strand, within MPMX19_06092at 274.128 kb on - strand, within MPMX19_06092at 274.128 kb on - strand, within MPMX19_06092at 274.128 kb on - strand, within MPMX19_06092at 274.560 kb on + strandat 274.560 kb on + strandat 274.561 kb on - strandat 274.561 kb on - strandat 274.629 kb on + strandat 274.629 kb on + strandat 274.629 kb on + strandat 274.629 kb on + strandat 274.629 kb on + strandat 274.630 kb on - strandat 274.630 kb on - strandat 274.630 kb on - strandat 274.630 kb on - strandat 274.718 kb on + strandat 274.718 kb on + strandat 274.718 kb on + strandat 274.718 kb on + strandat 274.719 kb on - strandat 274.719 kb on - strandat 274.719 kb on - strandat 274.768 kb on + strandat 274.768 kb on + strandat 274.768 kb on + strandat 274.768 kb on + strandat 274.769 kb on - strandat 274.769 kb on - strandat 274.771 kb on + strandat 274.771 kb on + strandat 274.771 kb on + strandat 274.771 kb on + strandat 274.771 kb on + strandat 274.771 kb on + strandat 274.771 kb on + strandat 274.771 kb on + strandat 274.772 kb on - strandat 274.772 kb on - strandat 274.772 kb on - strandat 274.772 kb on - strandat 274.772 kb on - strandat 274.772 kb on - strandat 274.897 kb on + strand, within MPMX19_06093at 274.898 kb on - strand, within MPMX19_06093at 274.898 kb on - strand, within MPMX19_06093at 274.898 kb on - strand, within MPMX19_06093at 274.898 kb on - strand, within MPMX19_06093at 274.979 kb on + strand, within MPMX19_06093at 274.979 kb on + strand, within MPMX19_06093at 274.979 kb on + strand, within MPMX19_06093at 274.980 kb on - strand, within MPMX19_06093at 274.980 kb on - strand, within MPMX19_06093at 274.980 kb on - strand, within MPMX19_06093

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
270,951 + MPMX19_06091 0.52 -0.9
270,951 + MPMX19_06091 0.52 +0.8
270,951 + MPMX19_06091 0.52 -0.3
270,951 + MPMX19_06091 0.52 -0.9
270,951 + MPMX19_06091 0.52 -0.5
270,951 + MPMX19_06091 0.52 +0.9
270,951 + MPMX19_06091 0.52 -0.1
270,951 + MPMX19_06091 0.52 -0.1
270,951 + MPMX19_06091 0.52 +0.1
270,952 - MPMX19_06091 0.52 +0.5
270,952 - MPMX19_06091 0.52 -0.1
270,952 - MPMX19_06091 0.52 -0.8
270,952 - MPMX19_06091 0.52 -2.3
270,952 - MPMX19_06091 0.52 -0.3
270,952 - MPMX19_06091 0.52 -2.6
270,952 - MPMX19_06091 0.52 +0.1
270,952 - MPMX19_06091 0.52 +0.7
270,952 - MPMX19_06091 0.52 +0.3
270,952 - MPMX19_06091 0.52 -0.9
270,980 + MPMX19_06091 0.54 -0.3
270,981 - MPMX19_06091 0.54 +0.1
270,981 - MPMX19_06091 0.54 -1.1
270,981 - MPMX19_06091 0.54 -2.1
271,175 + MPMX19_06091 0.65 +0.6
271,175 + MPMX19_06091 0.65 +1.7
271,175 + MPMX19_06091 0.65 +0.1
271,175 + MPMX19_06091 0.65 +0.7
271,175 + MPMX19_06091 0.65 -0.3
271,176 - MPMX19_06091 0.66 -0.7
271,176 - MPMX19_06091 0.66 -0.3
271,176 - MPMX19_06091 0.66 -0.3
271,176 - MPMX19_06091 0.66 -2.1
271,176 - MPMX19_06091 0.66 -1.2
271,176 - MPMX19_06091 0.66 +0.5
271,250 + MPMX19_06091 0.70 +1.0
271,251 - MPMX19_06091 0.70 -0.0
271,251 - MPMX19_06091 0.70 -0.8
271,277 + MPMX19_06091 0.72 -0.9
271,278 - MPMX19_06091 0.72 +1.1
271,278 - MPMX19_06091 0.72 -0.2
271,292 + MPMX19_06091 0.72 -0.5
271,292 + MPMX19_06091 0.72 +0.3
271,293 - MPMX19_06091 0.73 +0.1
271,293 - MPMX19_06091 0.73 +0.7
271,293 - MPMX19_06091 0.73 +1.1
271,293 - MPMX19_06091 0.73 -2.4
271,343 + MPMX19_06091 0.75 -0.2
271,343 + MPMX19_06091 0.75 +1.5
271,344 - MPMX19_06091 0.76 -1.6
271,344 - MPMX19_06091 0.76 -0.3
271,344 - MPMX19_06091 0.76 +0.4
271,344 - MPMX19_06091 0.76 -0.1
271,409 + MPMX19_06091 0.79 +0.4
271,715 + -0.8
271,715 + -0.1
271,715 + +1.1
271,715 + +1.1
271,715 + -0.7
271,715 + +0.0
271,715 + +0.1
271,715 + -0.4
271,715 + -1.1
271,716 - -1.6
271,716 - -0.1
271,716 - +0.4
271,716 - -0.7
271,716 - -1.4
271,716 - -0.8
271,716 - -0.2
271,716 - -2.1
271,716 - -0.8
271,851 + -0.0
271,851 + -0.9
271,851 + -0.1
271,851 + +0.5
271,852 - +0.2
271,852 - +0.8
271,852 - +0.2
271,852 - -1.5
271,929 + -0.3
271,930 - +0.0
271,950 + -0.1
271,951 - +0.5
272,316 + MPMX19_06092 0.17 -0.6
272,316 + MPMX19_06092 0.17 -1.0
272,317 - MPMX19_06092 0.17 +0.9
272,317 - MPMX19_06092 0.17 -0.6
272,517 + MPMX19_06092 0.24 -2.5
272,541 + MPMX19_06092 0.25 -1.1
272,541 + MPMX19_06092 0.25 -2.1
272,541 + MPMX19_06092 0.25 +0.4
272,542 - MPMX19_06092 0.25 -0.3
272,542 - MPMX19_06092 0.25 -0.5
272,542 - MPMX19_06092 0.25 +0.6
272,542 - MPMX19_06092 0.25 -1.9
272,918 + MPMX19_06092 0.38 -0.3
272,919 - MPMX19_06092 0.38 +0.5
273,103 - MPMX19_06092 0.44 -1.2
273,240 + MPMX19_06092 0.49 -1.3
273,240 + MPMX19_06092 0.49 -1.1
273,241 - MPMX19_06092 0.49 +0.8
273,241 - MPMX19_06092 0.49 -0.1
273,321 + MPMX19_06092 0.52 -0.6
273,321 + MPMX19_06092 0.52 +0.1
273,322 - MPMX19_06092 0.52 +0.3
273,322 - MPMX19_06092 0.52 -1.3
273,322 - MPMX19_06092 0.52 -0.5
273,322 - MPMX19_06092 0.52 -0.4
273,322 - MPMX19_06092 0.52 +0.3
273,606 + MPMX19_06092 0.62 -0.4
273,607 - MPMX19_06092 0.62 -1.3
273,607 - MPMX19_06092 0.62 -0.9
273,607 - MPMX19_06092 0.62 +0.9
273,607 - MPMX19_06092 0.62 -0.9
273,607 - MPMX19_06092 0.62 -1.5
273,607 - MPMX19_06092 0.62 -2.0
273,612 + MPMX19_06092 0.62 -0.6
273,613 - MPMX19_06092 0.62 -0.3
273,758 + MPMX19_06092 0.67 -2.2
273,758 + MPMX19_06092 0.67 +0.1
273,758 + MPMX19_06092 0.67 -0.6
273,758 + MPMX19_06092 0.67 -0.1
273,759 - MPMX19_06092 0.67 -0.1
273,759 - MPMX19_06092 0.67 +1.1
273,759 - MPMX19_06092 0.67 -0.0
273,759 - MPMX19_06092 0.67 -2.1
273,759 - MPMX19_06092 0.67 -0.4
273,966 + MPMX19_06092 0.74 -0.7
273,966 + MPMX19_06092 0.74 -1.0
273,966 + MPMX19_06092 0.74 -2.0
273,966 + MPMX19_06092 0.74 -1.0
273,967 - MPMX19_06092 0.74 +0.7
273,967 - MPMX19_06092 0.74 -1.4
273,967 - MPMX19_06092 0.74 -2.3
274,081 - MPMX19_06092 0.78 -2.0
274,127 + MPMX19_06092 0.80 -1.3
274,127 + MPMX19_06092 0.80 -0.1
274,127 + MPMX19_06092 0.80 -2.2
274,127 + MPMX19_06092 0.80 -0.3
274,127 + MPMX19_06092 0.80 -1.1
274,127 + MPMX19_06092 0.80 -1.5
274,127 + MPMX19_06092 0.80 -0.1
274,127 + MPMX19_06092 0.80 +1.2
274,127 + MPMX19_06092 0.80 -1.3
274,128 - MPMX19_06092 0.80 -2.1
274,128 - MPMX19_06092 0.80 -1.2
274,128 - MPMX19_06092 0.80 +0.9
274,128 - MPMX19_06092 0.80 -1.0
274,128 - MPMX19_06092 0.80 +0.2
274,128 - MPMX19_06092 0.80 -0.3
274,560 + +0.6
274,560 + -0.5
274,561 - +1.3
274,561 - -0.6
274,629 + -0.6
274,629 + -0.8
274,629 + -0.9
274,629 + -0.4
274,629 + +1.7
274,630 - -0.1
274,630 - +0.4
274,630 - +0.0
274,630 - -0.3
274,718 + -0.9
274,718 + -0.3
274,718 + +0.0
274,718 + +0.7
274,719 - +0.8
274,719 - +0.1
274,719 - -1.0
274,768 + +0.7
274,768 + -1.5
274,768 + +0.1
274,768 + -0.3
274,769 - -0.9
274,769 - +0.9
274,771 + +0.1
274,771 + -0.1
274,771 + -0.1
274,771 + +1.0
274,771 + -0.7
274,771 + -0.2
274,771 + +0.4
274,771 + -0.7
274,772 - +0.1
274,772 - -0.7
274,772 - -0.0
274,772 - -0.2
274,772 - -0.6
274,772 - -0.1
274,897 + MPMX19_06093 0.21 -0.1
274,898 - MPMX19_06093 0.21 -1.2
274,898 - MPMX19_06093 0.21 +0.4
274,898 - MPMX19_06093 0.21 +1.4
274,898 - MPMX19_06093 0.21 -0.4
274,979 + MPMX19_06093 0.32 -0.3
274,979 + MPMX19_06093 0.32 -1.6
274,979 + MPMX19_06093 0.32 +0.1
274,980 - MPMX19_06093 0.32 -1.0
274,980 - MPMX19_06093 0.32 -1.8
274,980 - MPMX19_06093 0.32 +0.3

Or see this region's nucleotide sequence