Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06035

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06033 and MPMX19_06034 are separated by 5 nucleotidesMPMX19_06034 and MPMX19_06035 are separated by 2 nucleotidesMPMX19_06035 and MPMX19_06036 are separated by 254 nucleotides MPMX19_06033: MPMX19_06033 - Phosphate transport system permease protein PstC, at 187,455 to 188,438 _06033 MPMX19_06034: MPMX19_06034 - Phosphate transport system permease protein PstA, at 188,444 to 189,325 _06034 MPMX19_06035: MPMX19_06035 - Phosphate import ATP-binding protein PstB, at 189,328 to 190,191 _06035 MPMX19_06036: MPMX19_06036 - Flavohemoprotein, at 190,446 to 191,810 _06036 Position (kb) 189 190 191Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 188.328 kb on + strand, within MPMX19_06033at 188.328 kb on + strand, within MPMX19_06033at 188.328 kb on + strand, within MPMX19_06033at 188.329 kb on - strand, within MPMX19_06033at 188.329 kb on - strand, within MPMX19_06033at 188.329 kb on - strand, within MPMX19_06033at 188.329 kb on - strand, within MPMX19_06033at 188.329 kb on - strand, within MPMX19_06033at 188.329 kb on - strand, within MPMX19_06033at 188.329 kb on - strand, within MPMX19_06033at 188.492 kb on + strandat 188.492 kb on + strandat 188.492 kb on + strandat 188.492 kb on + strandat 188.493 kb on - strandat 188.594 kb on + strand, within MPMX19_06034at 188.594 kb on + strand, within MPMX19_06034at 188.594 kb on + strand, within MPMX19_06034at 188.594 kb on + strand, within MPMX19_06034at 188.595 kb on - strand, within MPMX19_06034at 188.595 kb on - strand, within MPMX19_06034at 188.595 kb on - strand, within MPMX19_06034at 188.595 kb on - strand, within MPMX19_06034at 188.750 kb on + strand, within MPMX19_06034at 188.750 kb on + strand, within MPMX19_06034at 188.750 kb on + strand, within MPMX19_06034at 188.750 kb on + strand, within MPMX19_06034at 188.751 kb on - strand, within MPMX19_06034at 188.751 kb on - strand, within MPMX19_06034at 188.774 kb on - strand, within MPMX19_06034at 188.838 kb on + strand, within MPMX19_06034at 188.838 kb on + strand, within MPMX19_06034at 188.838 kb on + strand, within MPMX19_06034at 188.838 kb on + strand, within MPMX19_06034at 188.838 kb on + strand, within MPMX19_06034at 188.839 kb on - strand, within MPMX19_06034at 188.839 kb on - strand, within MPMX19_06034at 188.839 kb on - strand, within MPMX19_06034at 188.853 kb on - strand, within MPMX19_06034at 188.853 kb on - strand, within MPMX19_06034at 189.058 kb on + strand, within MPMX19_06034at 189.058 kb on + strand, within MPMX19_06034at 189.058 kb on + strand, within MPMX19_06034at 189.058 kb on + strand, within MPMX19_06034at 189.059 kb on - strand, within MPMX19_06034at 189.059 kb on - strand, within MPMX19_06034at 189.059 kb on - strand, within MPMX19_06034at 189.189 kb on + strand, within MPMX19_06034at 189.190 kb on - strand, within MPMX19_06034at 189.212 kb on + strand, within MPMX19_06034at 189.213 kb on - strand, within MPMX19_06034at 189.213 kb on - strand, within MPMX19_06034at 189.323 kb on + strandat 189.323 kb on + strandat 189.323 kb on + strandat 189.323 kb on + strandat 189.323 kb on + strandat 189.324 kb on - strandat 189.324 kb on - strandat 189.324 kb on - strandat 189.475 kb on + strand, within MPMX19_06035at 189.476 kb on - strand, within MPMX19_06035at 189.476 kb on - strand, within MPMX19_06035at 189.476 kb on - strand, within MPMX19_06035at 189.517 kb on + strand, within MPMX19_06035at 189.518 kb on - strand, within MPMX19_06035at 189.518 kb on - strand, within MPMX19_06035at 189.595 kb on + strand, within MPMX19_06035at 189.595 kb on + strand, within MPMX19_06035at 189.595 kb on + strand, within MPMX19_06035at 189.595 kb on + strand, within MPMX19_06035at 189.595 kb on + strand, within MPMX19_06035at 189.595 kb on + strand, within MPMX19_06035at 189.595 kb on + strand, within MPMX19_06035at 189.595 kb on + strand, within MPMX19_06035at 189.595 kb on + strand, within MPMX19_06035at 189.596 kb on - strand, within MPMX19_06035at 189.596 kb on - strand, within MPMX19_06035at 189.596 kb on - strand, within MPMX19_06035at 189.596 kb on - strand, within MPMX19_06035at 189.596 kb on - strand, within MPMX19_06035at 189.596 kb on - strand, within MPMX19_06035at 189.596 kb on - strand, within MPMX19_06035at 189.596 kb on - strand, within MPMX19_06035at 189.605 kb on - strand, within MPMX19_06035at 189.739 kb on + strand, within MPMX19_06035at 189.739 kb on + strand, within MPMX19_06035at 189.739 kb on + strand, within MPMX19_06035at 189.740 kb on - strand, within MPMX19_06035at 189.740 kb on - strand, within MPMX19_06035at 189.769 kb on + strand, within MPMX19_06035at 189.770 kb on - strand, within MPMX19_06035at 190.024 kb on + strand, within MPMX19_06035at 190.024 kb on + strand, within MPMX19_06035at 190.025 kb on - strand, within MPMX19_06035at 190.093 kb on + strand, within MPMX19_06035at 190.093 kb on + strand, within MPMX19_06035at 190.093 kb on + strand, within MPMX19_06035at 190.093 kb on + strand, within MPMX19_06035at 190.093 kb on + strand, within MPMX19_06035at 190.093 kb on + strand, within MPMX19_06035at 190.094 kb on - strand, within MPMX19_06035at 190.094 kb on - strand, within MPMX19_06035at 190.094 kb on - strand, within MPMX19_06035at 190.168 kb on + strandat 190.169 kb on - strandat 190.169 kb on - strandat 190.169 kb on - strandat 190.169 kb on - strandat 190.192 kb on + strandat 190.192 kb on + strandat 190.193 kb on - strandat 190.286 kb on + strandat 190.286 kb on + strandat 190.286 kb on + strandat 190.287 kb on - strandat 190.287 kb on - strandat 190.287 kb on - strandat 190.287 kb on - strandat 190.316 kb on + strandat 190.368 kb on + strandat 190.368 kb on + strandat 190.368 kb on + strandat 190.369 kb on - strandat 190.369 kb on - strandat 190.369 kb on - strandat 190.369 kb on - strandat 190.391 kb on + strandat 190.391 kb on + strandat 190.391 kb on + strandat 190.391 kb on + strandat 190.391 kb on + strandat 190.392 kb on - strandat 190.696 kb on + strand, within MPMX19_06036at 190.696 kb on + strand, within MPMX19_06036at 190.696 kb on + strand, within MPMX19_06036at 190.697 kb on - strand, within MPMX19_06036at 190.697 kb on - strand, within MPMX19_06036at 190.697 kb on - strand, within MPMX19_06036at 190.697 kb on - strand, within MPMX19_06036at 190.759 kb on + strand, within MPMX19_06036at 190.759 kb on + strand, within MPMX19_06036at 190.759 kb on + strand, within MPMX19_06036at 190.759 kb on + strand, within MPMX19_06036at 190.759 kb on + strand, within MPMX19_06036at 190.759 kb on + strand, within MPMX19_06036at 190.759 kb on + strand, within MPMX19_06036at 190.760 kb on - strand, within MPMX19_06036at 190.760 kb on - strand, within MPMX19_06036at 190.760 kb on - strand, within MPMX19_06036at 190.760 kb on - strand, within MPMX19_06036at 190.760 kb on - strand, within MPMX19_06036at 190.907 kb on + strand, within MPMX19_06036at 190.907 kb on + strand, within MPMX19_06036at 190.907 kb on + strand, within MPMX19_06036at 190.907 kb on + strand, within MPMX19_06036at 190.907 kb on + strand, within MPMX19_06036at 190.907 kb on + strand, within MPMX19_06036at 190.907 kb on + strand, within MPMX19_06036at 190.907 kb on + strand, within MPMX19_06036at 190.907 kb on + strand, within MPMX19_06036at 190.908 kb on - strand, within MPMX19_06036at 190.908 kb on - strand, within MPMX19_06036at 190.908 kb on - strand, within MPMX19_06036at 190.976 kb on + strand, within MPMX19_06036at 190.976 kb on + strand, within MPMX19_06036at 190.976 kb on + strand, within MPMX19_06036at 190.976 kb on + strand, within MPMX19_06036at 190.976 kb on + strand, within MPMX19_06036at 190.976 kb on + strand, within MPMX19_06036at 190.976 kb on + strand, within MPMX19_06036at 190.977 kb on - strand, within MPMX19_06036at 190.977 kb on - strand, within MPMX19_06036at 190.977 kb on - strand, within MPMX19_06036at 190.977 kb on - strand, within MPMX19_06036at 190.978 kb on + strand, within MPMX19_06036at 190.978 kb on + strand, within MPMX19_06036at 190.978 kb on + strand, within MPMX19_06036at 190.978 kb on + strand, within MPMX19_06036at 190.978 kb on + strand, within MPMX19_06036at 190.978 kb on + strand, within MPMX19_06036at 190.978 kb on + strand, within MPMX19_06036at 190.978 kb on + strand, within MPMX19_06036at 190.978 kb on + strand, within MPMX19_06036at 190.978 kb on + strand, within MPMX19_06036at 190.979 kb on - strand, within MPMX19_06036at 190.979 kb on - strand, within MPMX19_06036at 191.093 kb on - strand, within MPMX19_06036

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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188,328 + MPMX19_06033 0.89 -0.1
188,328 + MPMX19_06033 0.89 -0.5
188,328 + MPMX19_06033 0.89 -0.0
188,329 - MPMX19_06033 0.89 -0.9
188,329 - MPMX19_06033 0.89 +1.4
188,329 - MPMX19_06033 0.89 -1.9
188,329 - MPMX19_06033 0.89 -1.6
188,329 - MPMX19_06033 0.89 +0.1
188,329 - MPMX19_06033 0.89 -0.2
188,329 - MPMX19_06033 0.89 -0.3
188,492 + +1.7
188,492 + +0.5
188,492 + -0.7
188,492 + +1.3
188,493 - -0.9
188,594 + MPMX19_06034 0.17 -1.6
188,594 + MPMX19_06034 0.17 +2.3
188,594 + MPMX19_06034 0.17 -0.1
188,594 + MPMX19_06034 0.17 -1.0
188,595 - MPMX19_06034 0.17 +0.3
188,595 - MPMX19_06034 0.17 +0.7
188,595 - MPMX19_06034 0.17 +0.3
188,595 - MPMX19_06034 0.17 +1.3
188,750 + MPMX19_06034 0.35 -0.2
188,750 + MPMX19_06034 0.35 -1.8
188,750 + MPMX19_06034 0.35 -1.9
188,750 + MPMX19_06034 0.35 -0.1
188,751 - MPMX19_06034 0.35 -0.0
188,751 - MPMX19_06034 0.35 +1.2
188,774 - MPMX19_06034 0.37 -1.8
188,838 + MPMX19_06034 0.45 +0.5
188,838 + MPMX19_06034 0.45 -1.6
188,838 + MPMX19_06034 0.45 -1.5
188,838 + MPMX19_06034 0.45 +1.0
188,838 + MPMX19_06034 0.45 -0.3
188,839 - MPMX19_06034 0.45 -1.4
188,839 - MPMX19_06034 0.45 +1.5
188,839 - MPMX19_06034 0.45 +1.5
188,853 - MPMX19_06034 0.46 -0.6
188,853 - MPMX19_06034 0.46 +1.3
189,058 + MPMX19_06034 0.70 +0.1
189,058 + MPMX19_06034 0.70 -1.1
189,058 + MPMX19_06034 0.70 -2.6
189,058 + MPMX19_06034 0.70 -1.3
189,059 - MPMX19_06034 0.70 -0.9
189,059 - MPMX19_06034 0.70 -0.5
189,059 - MPMX19_06034 0.70 -1.5
189,189 + MPMX19_06034 0.84 -1.3
189,190 - MPMX19_06034 0.85 +0.8
189,212 + MPMX19_06034 0.87 +0.7
189,213 - MPMX19_06034 0.87 -0.5
189,213 - MPMX19_06034 0.87 -0.0
189,323 + +0.4
189,323 + -0.0
189,323 + -0.5
189,323 + -1.5
189,323 + -1.0
189,324 - +0.4
189,324 - +0.1
189,324 - -2.3
189,475 + MPMX19_06035 0.17 -1.8
189,476 - MPMX19_06035 0.17 +0.5
189,476 - MPMX19_06035 0.17 -0.9
189,476 - MPMX19_06035 0.17 +0.8
189,517 + MPMX19_06035 0.22 +1.7
189,518 - MPMX19_06035 0.22 -0.3
189,518 - MPMX19_06035 0.22 +0.1
189,595 + MPMX19_06035 0.31 -0.5
189,595 + MPMX19_06035 0.31 -1.0
189,595 + MPMX19_06035 0.31 -1.5
189,595 + MPMX19_06035 0.31 +0.5
189,595 + MPMX19_06035 0.31 -0.3
189,595 + MPMX19_06035 0.31 -1.1
189,595 + MPMX19_06035 0.31 -1.5
189,595 + MPMX19_06035 0.31 -0.4
189,595 + MPMX19_06035 0.31 -1.2
189,596 - MPMX19_06035 0.31 +0.1
189,596 - MPMX19_06035 0.31 +0.0
189,596 - MPMX19_06035 0.31 +0.4
189,596 - MPMX19_06035 0.31 -0.7
189,596 - MPMX19_06035 0.31 +0.6
189,596 - MPMX19_06035 0.31 +1.1
189,596 - MPMX19_06035 0.31 +0.9
189,596 - MPMX19_06035 0.31 +0.5
189,605 - MPMX19_06035 0.32 -0.5
189,739 + MPMX19_06035 0.48 +0.3
189,739 + MPMX19_06035 0.48 -1.1
189,739 + MPMX19_06035 0.48 -0.6
189,740 - MPMX19_06035 0.48 -0.6
189,740 - MPMX19_06035 0.48 -1.6
189,769 + MPMX19_06035 0.51 +0.1
189,770 - MPMX19_06035 0.51 -2.0
190,024 + MPMX19_06035 0.81 -0.5
190,024 + MPMX19_06035 0.81 -0.3
190,025 - MPMX19_06035 0.81 -1.5
190,093 + MPMX19_06035 0.89 -2.2
190,093 + MPMX19_06035 0.89 -0.2
190,093 + MPMX19_06035 0.89 -1.6
190,093 + MPMX19_06035 0.89 -0.9
190,093 + MPMX19_06035 0.89 -1.0
190,093 + MPMX19_06035 0.89 -0.7
190,094 - MPMX19_06035 0.89 -0.3
190,094 - MPMX19_06035 0.89 -0.3
190,094 - MPMX19_06035 0.89 +0.5
190,168 + +0.4
190,169 - -0.6
190,169 - -0.7
190,169 - +1.0
190,169 - +0.7
190,192 + -0.6
190,192 + -1.0
190,193 - -1.5
190,286 + -1.1
190,286 + -0.6
190,286 + +0.6
190,287 - -1.4
190,287 - -0.2
190,287 - +0.5
190,287 - +0.6
190,316 + -2.8
190,368 + -1.0
190,368 + -0.1
190,368 + -0.9
190,369 - -1.2
190,369 - -0.7
190,369 - -0.5
190,369 - -0.7
190,391 + -1.6
190,391 + -1.0
190,391 + +0.1
190,391 + -1.6
190,391 + +0.6
190,392 - -1.9
190,696 + MPMX19_06036 0.18 +1.3
190,696 + MPMX19_06036 0.18 -0.8
190,696 + MPMX19_06036 0.18 +0.5
190,697 - MPMX19_06036 0.18 -1.5
190,697 - MPMX19_06036 0.18 -0.1
190,697 - MPMX19_06036 0.18 -0.8
190,697 - MPMX19_06036 0.18 +1.1
190,759 + MPMX19_06036 0.23 +0.2
190,759 + MPMX19_06036 0.23 -0.6
190,759 + MPMX19_06036 0.23 -1.5
190,759 + MPMX19_06036 0.23 +1.0
190,759 + MPMX19_06036 0.23 +0.1
190,759 + MPMX19_06036 0.23 -0.8
190,759 + MPMX19_06036 0.23 +0.4
190,760 - MPMX19_06036 0.23 -0.2
190,760 - MPMX19_06036 0.23 -0.9
190,760 - MPMX19_06036 0.23 -0.7
190,760 - MPMX19_06036 0.23 -1.6
190,760 - MPMX19_06036 0.23 -0.8
190,907 + MPMX19_06036 0.34 -0.6
190,907 + MPMX19_06036 0.34 -0.9
190,907 + MPMX19_06036 0.34 +0.8
190,907 + MPMX19_06036 0.34 +0.5
190,907 + MPMX19_06036 0.34 +0.1
190,907 + MPMX19_06036 0.34 -1.1
190,907 + MPMX19_06036 0.34 +0.2
190,907 + MPMX19_06036 0.34 -0.5
190,907 + MPMX19_06036 0.34 -0.1
190,908 - MPMX19_06036 0.34 -0.9
190,908 - MPMX19_06036 0.34 +0.1
190,908 - MPMX19_06036 0.34 -1.0
190,976 + MPMX19_06036 0.39 +0.5
190,976 + MPMX19_06036 0.39 +0.5
190,976 + MPMX19_06036 0.39 -1.0
190,976 + MPMX19_06036 0.39 -1.3
190,976 + MPMX19_06036 0.39 +0.8
190,976 + MPMX19_06036 0.39 -1.4
190,976 + MPMX19_06036 0.39 -2.0
190,977 - MPMX19_06036 0.39 +0.3
190,977 - MPMX19_06036 0.39 -0.9
190,977 - MPMX19_06036 0.39 -1.5
190,977 - MPMX19_06036 0.39 -0.3
190,978 + MPMX19_06036 0.39 -0.6
190,978 + MPMX19_06036 0.39 -0.5
190,978 + MPMX19_06036 0.39 -0.3
190,978 + MPMX19_06036 0.39 -0.1
190,978 + MPMX19_06036 0.39 +1.1
190,978 + MPMX19_06036 0.39 +1.3
190,978 + MPMX19_06036 0.39 -0.3
190,978 + MPMX19_06036 0.39 -1.3
190,978 + MPMX19_06036 0.39 -0.5
190,978 + MPMX19_06036 0.39 -1.5
190,979 - MPMX19_06036 0.39 -0.1
190,979 - MPMX19_06036 0.39 -0.7
191,093 - MPMX19_06036 0.47 -0.1

Or see this region's nucleotide sequence