Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06032

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06031 and MPMX19_06032 are separated by 191 nucleotidesMPMX19_06032 and MPMX19_06033 are separated by 108 nucleotides MPMX19_06031: MPMX19_06031 - hypothetical protein, at 183,400 to 186,078 _06031 MPMX19_06032: MPMX19_06032 - Phosphate-binding protein PstS, at 186,270 to 187,346 _06032 MPMX19_06033: MPMX19_06033 - Phosphate transport system permease protein PstC, at 187,455 to 188,438 _06033 Position (kb) 186 187 188Strain fitness (log2 ratio) -2 -1 0 1 2at 186.139 kb on - strandat 186.139 kb on - strandat 186.170 kb on - strandat 186.198 kb on - strandat 186.198 kb on - strandat 186.254 kb on + strandat 186.265 kb on + strandat 186.265 kb on + strandat 186.408 kb on + strand, within MPMX19_06032at 186.408 kb on + strand, within MPMX19_06032at 186.408 kb on + strand, within MPMX19_06032at 186.429 kb on + strand, within MPMX19_06032at 186.429 kb on + strand, within MPMX19_06032at 186.429 kb on + strand, within MPMX19_06032at 186.429 kb on + strand, within MPMX19_06032at 186.430 kb on - strand, within MPMX19_06032at 186.459 kb on + strand, within MPMX19_06032at 186.672 kb on + strand, within MPMX19_06032at 186.672 kb on + strand, within MPMX19_06032at 186.672 kb on + strand, within MPMX19_06032at 186.672 kb on + strand, within MPMX19_06032at 186.672 kb on + strand, within MPMX19_06032at 186.672 kb on + strand, within MPMX19_06032at 186.672 kb on + strand, within MPMX19_06032at 186.672 kb on + strand, within MPMX19_06032at 186.672 kb on + strand, within MPMX19_06032at 186.672 kb on + strand, within MPMX19_06032at 186.673 kb on - strand, within MPMX19_06032at 186.673 kb on - strand, within MPMX19_06032at 186.673 kb on - strand, within MPMX19_06032at 186.673 kb on - strand, within MPMX19_06032at 186.673 kb on - strand, within MPMX19_06032at 186.673 kb on - strand, within MPMX19_06032at 186.673 kb on - strand, within MPMX19_06032at 186.673 kb on - strand, within MPMX19_06032at 186.673 kb on - strand, within MPMX19_06032at 186.762 kb on + strand, within MPMX19_06032at 186.762 kb on + strand, within MPMX19_06032at 186.763 kb on - strand, within MPMX19_06032at 186.804 kb on + strand, within MPMX19_06032at 186.804 kb on + strand, within MPMX19_06032at 186.804 kb on + strand, within MPMX19_06032at 186.805 kb on - strand, within MPMX19_06032at 186.939 kb on + strand, within MPMX19_06032at 186.954 kb on + strand, within MPMX19_06032at 187.077 kb on + strand, within MPMX19_06032at 187.077 kb on + strand, within MPMX19_06032at 187.077 kb on + strand, within MPMX19_06032at 187.078 kb on - strand, within MPMX19_06032at 187.078 kb on - strand, within MPMX19_06032at 187.078 kb on - strand, within MPMX19_06032at 187.078 kb on - strand, within MPMX19_06032at 187.078 kb on - strand, within MPMX19_06032at 187.078 kb on - strand, within MPMX19_06032at 187.080 kb on + strand, within MPMX19_06032at 187.080 kb on + strand, within MPMX19_06032at 187.080 kb on + strand, within MPMX19_06032at 187.080 kb on + strand, within MPMX19_06032at 187.080 kb on + strand, within MPMX19_06032at 187.080 kb on + strand, within MPMX19_06032at 187.080 kb on + strand, within MPMX19_06032at 187.080 kb on + strand, within MPMX19_06032at 187.080 kb on + strand, within MPMX19_06032at 187.080 kb on + strand, within MPMX19_06032at 187.080 kb on + strand, within MPMX19_06032at 187.080 kb on + strand, within MPMX19_06032at 187.080 kb on + strand, within MPMX19_06032at 187.081 kb on - strand, within MPMX19_06032at 187.081 kb on - strand, within MPMX19_06032at 187.081 kb on - strand, within MPMX19_06032at 187.081 kb on - strand, within MPMX19_06032at 187.081 kb on - strand, within MPMX19_06032at 187.081 kb on - strand, within MPMX19_06032at 187.081 kb on - strand, within MPMX19_06032at 187.081 kb on - strand, within MPMX19_06032at 187.081 kb on - strand, within MPMX19_06032at 187.081 kb on - strand, within MPMX19_06032at 187.081 kb on - strand, within MPMX19_06032at 187.081 kb on - strand, within MPMX19_06032at 187.081 kb on - strand, within MPMX19_06032at 187.149 kb on + strand, within MPMX19_06032at 187.149 kb on + strand, within MPMX19_06032at 187.149 kb on + strand, within MPMX19_06032at 187.149 kb on + strand, within MPMX19_06032at 187.149 kb on + strand, within MPMX19_06032at 187.150 kb on - strand, within MPMX19_06032at 187.150 kb on - strand, within MPMX19_06032at 187.150 kb on - strand, within MPMX19_06032at 187.150 kb on - strand, within MPMX19_06032at 187.150 kb on - strand, within MPMX19_06032at 187.150 kb on - strand, within MPMX19_06032at 187.209 kb on + strand, within MPMX19_06032at 187.209 kb on + strand, within MPMX19_06032at 187.210 kb on - strand, within MPMX19_06032at 187.210 kb on - strand, within MPMX19_06032at 187.245 kb on + strandat 187.245 kb on + strandat 187.245 kb on + strandat 187.245 kb on + strandat 187.246 kb on - strandat 187.246 kb on - strandat 187.344 kb on + strandat 187.344 kb on + strandat 187.344 kb on + strandat 187.344 kb on + strandat 187.344 kb on + strandat 187.344 kb on + strandat 187.344 kb on + strandat 187.710 kb on + strand, within MPMX19_06033at 187.710 kb on + strand, within MPMX19_06033at 187.710 kb on + strand, within MPMX19_06033at 187.711 kb on - strand, within MPMX19_06033at 187.711 kb on - strand, within MPMX19_06033at 187.711 kb on - strand, within MPMX19_06033at 187.723 kb on + strand, within MPMX19_06033at 187.863 kb on + strand, within MPMX19_06033at 187.863 kb on + strand, within MPMX19_06033at 187.863 kb on + strand, within MPMX19_06033at 187.864 kb on - strand, within MPMX19_06033at 187.864 kb on - strand, within MPMX19_06033at 187.864 kb on - strand, within MPMX19_06033at 187.864 kb on - strand, within MPMX19_06033at 187.931 kb on + strand, within MPMX19_06033at 187.931 kb on + strand, within MPMX19_06033at 187.931 kb on + strand, within MPMX19_06033at 187.932 kb on - strand, within MPMX19_06033at 187.932 kb on - strand, within MPMX19_06033at 188.148 kb on + strand, within MPMX19_06033at 188.148 kb on + strand, within MPMX19_06033at 188.328 kb on + strand, within MPMX19_06033at 188.328 kb on + strand, within MPMX19_06033at 188.328 kb on + strand, within MPMX19_06033at 188.329 kb on - strand, within MPMX19_06033at 188.329 kb on - strand, within MPMX19_06033at 188.329 kb on - strand, within MPMX19_06033at 188.329 kb on - strand, within MPMX19_06033at 188.329 kb on - strand, within MPMX19_06033at 188.329 kb on - strand, within MPMX19_06033at 188.329 kb on - strand, within MPMX19_06033

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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186,139 - +0.7
186,139 - -1.5
186,170 - -1.1
186,198 - -0.6
186,198 - -2.1
186,254 + -0.9
186,265 + +2.0
186,265 + -0.2
186,408 + MPMX19_06032 0.13 -1.3
186,408 + MPMX19_06032 0.13 +0.7
186,408 + MPMX19_06032 0.13 -0.9
186,429 + MPMX19_06032 0.15 -0.9
186,429 + MPMX19_06032 0.15 -0.1
186,429 + MPMX19_06032 0.15 -0.5
186,429 + MPMX19_06032 0.15 -0.5
186,430 - MPMX19_06032 0.15 -0.1
186,459 + MPMX19_06032 0.18 +0.4
186,672 + MPMX19_06032 0.37 -1.8
186,672 + MPMX19_06032 0.37 -0.1
186,672 + MPMX19_06032 0.37 +2.0
186,672 + MPMX19_06032 0.37 -0.1
186,672 + MPMX19_06032 0.37 -1.5
186,672 + MPMX19_06032 0.37 -0.5
186,672 + MPMX19_06032 0.37 -2.5
186,672 + MPMX19_06032 0.37 -1.8
186,672 + MPMX19_06032 0.37 -0.9
186,672 + MPMX19_06032 0.37 -1.8
186,673 - MPMX19_06032 0.37 -0.4
186,673 - MPMX19_06032 0.37 -1.5
186,673 - MPMX19_06032 0.37 +0.1
186,673 - MPMX19_06032 0.37 +0.6
186,673 - MPMX19_06032 0.37 -1.5
186,673 - MPMX19_06032 0.37 -1.1
186,673 - MPMX19_06032 0.37 +0.5
186,673 - MPMX19_06032 0.37 +0.2
186,673 - MPMX19_06032 0.37 -1.8
186,762 + MPMX19_06032 0.46 +0.5
186,762 + MPMX19_06032 0.46 +0.7
186,763 - MPMX19_06032 0.46 +0.0
186,804 + MPMX19_06032 0.50 -0.1
186,804 + MPMX19_06032 0.50 -0.3
186,804 + MPMX19_06032 0.50 +0.3
186,805 - MPMX19_06032 0.50 -1.2
186,939 + MPMX19_06032 0.62 +0.1
186,954 + MPMX19_06032 0.64 -0.4
187,077 + MPMX19_06032 0.75 +0.2
187,077 + MPMX19_06032 0.75 +0.1
187,077 + MPMX19_06032 0.75 +1.2
187,078 - MPMX19_06032 0.75 +1.2
187,078 - MPMX19_06032 0.75 +0.4
187,078 - MPMX19_06032 0.75 +1.1
187,078 - MPMX19_06032 0.75 -0.2
187,078 - MPMX19_06032 0.75 -0.9
187,078 - MPMX19_06032 0.75 -0.6
187,080 + MPMX19_06032 0.75 +0.1
187,080 + MPMX19_06032 0.75 -0.3
187,080 + MPMX19_06032 0.75 +1.9
187,080 + MPMX19_06032 0.75 -0.3
187,080 + MPMX19_06032 0.75 +0.3
187,080 + MPMX19_06032 0.75 -2.0
187,080 + MPMX19_06032 0.75 -0.8
187,080 + MPMX19_06032 0.75 +2.1
187,080 + MPMX19_06032 0.75 -2.3
187,080 + MPMX19_06032 0.75 -1.8
187,080 + MPMX19_06032 0.75 -1.9
187,080 + MPMX19_06032 0.75 +0.1
187,080 + MPMX19_06032 0.75 -0.4
187,081 - MPMX19_06032 0.75 -0.2
187,081 - MPMX19_06032 0.75 -0.3
187,081 - MPMX19_06032 0.75 -0.6
187,081 - MPMX19_06032 0.75 -0.3
187,081 - MPMX19_06032 0.75 -0.5
187,081 - MPMX19_06032 0.75 -1.0
187,081 - MPMX19_06032 0.75 -0.3
187,081 - MPMX19_06032 0.75 -0.9
187,081 - MPMX19_06032 0.75 -1.3
187,081 - MPMX19_06032 0.75 +0.1
187,081 - MPMX19_06032 0.75 +1.3
187,081 - MPMX19_06032 0.75 +0.1
187,081 - MPMX19_06032 0.75 -1.1
187,149 + MPMX19_06032 0.82 +0.1
187,149 + MPMX19_06032 0.82 -0.5
187,149 + MPMX19_06032 0.82 -1.8
187,149 + MPMX19_06032 0.82 -0.3
187,149 + MPMX19_06032 0.82 -1.8
187,150 - MPMX19_06032 0.82 -0.8
187,150 - MPMX19_06032 0.82 -0.3
187,150 - MPMX19_06032 0.82 +0.4
187,150 - MPMX19_06032 0.82 +0.4
187,150 - MPMX19_06032 0.82 +0.5
187,150 - MPMX19_06032 0.82 +1.5
187,209 + MPMX19_06032 0.87 -0.8
187,209 + MPMX19_06032 0.87 +0.7
187,210 - MPMX19_06032 0.87 -0.1
187,210 - MPMX19_06032 0.87 +0.2
187,245 + -0.3
187,245 + -0.3
187,245 + -1.8
187,245 + -1.2
187,246 - +0.1
187,246 - -0.6
187,344 + -0.5
187,344 + -0.2
187,344 + -0.2
187,344 + +0.1
187,344 + +0.7
187,344 + -0.2
187,344 + -1.9
187,710 + MPMX19_06033 0.26 -1.6
187,710 + MPMX19_06033 0.26 -0.3
187,710 + MPMX19_06033 0.26 -2.1
187,711 - MPMX19_06033 0.26 -1.2
187,711 - MPMX19_06033 0.26 +0.1
187,711 - MPMX19_06033 0.26 -0.1
187,723 + MPMX19_06033 0.27 +0.1
187,863 + MPMX19_06033 0.41 -2.3
187,863 + MPMX19_06033 0.41 -0.9
187,863 + MPMX19_06033 0.41 -1.3
187,864 - MPMX19_06033 0.42 +0.5
187,864 - MPMX19_06033 0.42 +0.4
187,864 - MPMX19_06033 0.42 -1.1
187,864 - MPMX19_06033 0.42 -1.4
187,931 + MPMX19_06033 0.48 -0.3
187,931 + MPMX19_06033 0.48 +0.1
187,931 + MPMX19_06033 0.48 -0.7
187,932 - MPMX19_06033 0.48 -1.3
187,932 - MPMX19_06033 0.48 -1.0
188,148 + MPMX19_06033 0.70 -2.4
188,148 + MPMX19_06033 0.70 -1.5
188,328 + MPMX19_06033 0.89 -0.1
188,328 + MPMX19_06033 0.89 -0.5
188,328 + MPMX19_06033 0.89 -0.0
188,329 - MPMX19_06033 0.89 -0.9
188,329 - MPMX19_06033 0.89 +1.4
188,329 - MPMX19_06033 0.89 -1.9
188,329 - MPMX19_06033 0.89 -1.6
188,329 - MPMX19_06033 0.89 +0.1
188,329 - MPMX19_06033 0.89 -0.2
188,329 - MPMX19_06033 0.89 -0.3

Or see this region's nucleotide sequence