Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06025 and MPMX19_06026 are separated by 74 nucleotides MPMX19_06026 and MPMX19_06027 are separated by 168 nucleotides
MPMX19_06025: MPMX19_06025 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 177,852 to 178,892
_06025
MPMX19_06026: MPMX19_06026 - hypothetical protein, at 178,967 to 179,530
_06026
MPMX19_06027: MPMX19_06027 - hypothetical protein, at 179,699 to 180,925
_06027
Position (kb) 178
179
180 Strain fitness (log2 ratio) -2
-1
0
1 at 178.893 kb on - strand at 178.893 kb on - strand at 178.893 kb on - strand at 178.893 kb on - strand at 178.893 kb on - strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 179.119 kb on - strand, within MPMX19_06026 at 179.551 kb on - strand at 179.563 kb on + strand at 179.563 kb on + strand at 179.564 kb on - strand at 179.627 kb on + strand at 179.627 kb on + strand at 179.627 kb on + strand at 179.627 kb on + strand at 179.673 kb on + strand at 179.674 kb on - strand at 179.674 kb on - strand at 179.927 kb on + strand, within MPMX19_06027 at 179.927 kb on + strand, within MPMX19_06027 at 179.927 kb on + strand, within MPMX19_06027 at 179.927 kb on + strand, within MPMX19_06027 at 179.927 kb on + strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 178,893 - +0.7 178,893 - +0.6 178,893 - -0.3 178,893 - -0.8 178,893 - -0.6 178,968 + -0.0 178,968 + +1.5 178,968 + -0.5 178,968 + +0.9 178,968 + +0.5 178,969 - +1.7 178,969 - -1.1 178,969 - -2.1 178,969 - +0.0 178,969 - -0.3 178,969 - -1.3 179,119 - MPMX19_06026 0.27 -0.3 179,551 - +0.3 179,563 + -0.9 179,563 + -1.0 179,564 - +1.2 179,627 + -1.2 179,627 + +0.1 179,627 + -0.9 179,627 + -0.3 179,673 + -0.5 179,674 - -0.9 179,674 - +0.3 179,927 + MPMX19_06027 0.19 -0.5 179,927 + MPMX19_06027 0.19 +0.8 179,927 + MPMX19_06027 0.19 -2.6 179,927 + MPMX19_06027 0.19 +0.3 179,927 + MPMX19_06027 0.19 +0.1 179,928 - MPMX19_06027 0.19 +0.4 179,928 - MPMX19_06027 0.19 -1.6 179,928 - MPMX19_06027 0.19 -1.6 179,928 - MPMX19_06027 0.19 -1.0 179,928 - MPMX19_06027 0.19 -1.3 179,928 - MPMX19_06027 0.19 +0.4 179,928 - MPMX19_06027 0.19 -1.1 179,928 - MPMX19_06027 0.19 -1.5
Or see this region's nucleotide sequence