Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06015 and MPMX19_06016 are separated by 0 nucleotides MPMX19_06016 and MPMX19_06017 are separated by 140 nucleotides MPMX19_06017 and MPMX19_06018 are separated by 28 nucleotides MPMX19_06018 and MPMX19_06019 are separated by 241 nucleotides
MPMX19_06015: MPMX19_06015 - Aerobic respiration control protein ArcA, at 168,785 to 169,480
_06015
MPMX19_06016: MPMX19_06016 - putative N-octanoylanthranilate hydrolase AqdA1, at 169,481 to 170,311
_06016
MPMX19_06017: MPMX19_06017 - hypothetical protein, at 170,452 to 171,081
_06017
MPMX19_06018: MPMX19_06018 - hypothetical protein, at 171,110 to 171,673
_06018
MPMX19_06019: MPMX19_06019 - Peptide methionine sulfoxide reductase MsrB, at 171,915 to 172,331
_06019
Position (kb) 170
171
172 Strain fitness (log2 ratio) -2
-1
0
1 at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.599 kb on + strand, within MPMX19_06016 at 169.599 kb on + strand, within MPMX19_06016 at 169.599 kb on + strand, within MPMX19_06016 at 169.599 kb on + strand, within MPMX19_06016 at 169.599 kb on + strand, within MPMX19_06016 at 169.599 kb on + strand, within MPMX19_06016 at 169.599 kb on + strand, within MPMX19_06016 at 169.599 kb on + strand, within MPMX19_06016 at 169.599 kb on + strand, within MPMX19_06016 at 169.812 kb on + strand, within MPMX19_06016 at 169.813 kb on - strand, within MPMX19_06016 at 169.813 kb on - strand, within MPMX19_06016 at 169.813 kb on - strand, within MPMX19_06016 at 169.813 kb on - strand, within MPMX19_06016 at 169.911 kb on + strand, within MPMX19_06016 at 169.911 kb on + strand, within MPMX19_06016 at 169.911 kb on + strand, within MPMX19_06016 at 169.911 kb on + strand, within MPMX19_06016 at 169.911 kb on + strand, within MPMX19_06016 at 169.911 kb on + strand, within MPMX19_06016 at 169.911 kb on + strand, within MPMX19_06016 at 169.911 kb on + strand, within MPMX19_06016 at 169.911 kb on + strand, within MPMX19_06016 at 169.911 kb on + strand, within MPMX19_06016 at 169.912 kb on - strand, within MPMX19_06016 at 169.912 kb on - strand, within MPMX19_06016 at 169.912 kb on - strand, within MPMX19_06016 at 169.912 kb on - strand, within MPMX19_06016 at 169.912 kb on - strand, within MPMX19_06016 at 169.912 kb on - strand, within MPMX19_06016 at 169.912 kb on - strand, within MPMX19_06016 at 169.912 kb on - strand, within MPMX19_06016 at 170.040 kb on + strand, within MPMX19_06016 at 170.040 kb on + strand, within MPMX19_06016 at 170.041 kb on - strand, within MPMX19_06016 at 170.049 kb on + strand, within MPMX19_06016 at 170.070 kb on + strand, within MPMX19_06016 at 170.070 kb on + strand, within MPMX19_06016 at 170.071 kb on - strand, within MPMX19_06016 at 170.071 kb on - strand, within MPMX19_06016 at 170.071 kb on - strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.107 kb on - strand, within MPMX19_06016 at 170.107 kb on - strand, within MPMX19_06016 at 170.107 kb on - strand, within MPMX19_06016 at 170.107 kb on - strand, within MPMX19_06016 at 170.107 kb on - strand, within MPMX19_06016 at 170.142 kb on + strand, within MPMX19_06016 at 170.142 kb on + strand, within MPMX19_06016 at 170.142 kb on + strand, within MPMX19_06016 at 170.142 kb on + strand, within MPMX19_06016 at 170.142 kb on + strand, within MPMX19_06016 at 170.142 kb on + strand, within MPMX19_06016 at 170.142 kb on + strand, within MPMX19_06016 at 170.142 kb on + strand, within MPMX19_06016 at 170.142 kb on + strand, within MPMX19_06016 at 170.143 kb on - strand, within MPMX19_06016 at 170.143 kb on - strand, within MPMX19_06016 at 170.190 kb on + strand, within MPMX19_06016 at 170.190 kb on + strand, within MPMX19_06016 at 170.248 kb on - strand at 170.248 kb on - strand at 170.248 kb on - strand at 170.389 kb on + strand at 170.389 kb on + strand at 170.389 kb on + strand at 170.389 kb on + strand at 170.389 kb on + strand at 170.390 kb on - strand at 170.390 kb on - strand at 170.390 kb on - strand at 170.390 kb on - strand at 170.390 kb on - strand at 170.390 kb on - strand at 170.390 kb on - strand at 170.622 kb on - strand, within MPMX19_06017 at 170.801 kb on + strand, within MPMX19_06017 at 170.801 kb on + strand, within MPMX19_06017 at 170.801 kb on + strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.897 kb on + strand, within MPMX19_06017 at 170.898 kb on - strand, within MPMX19_06017 at 170.898 kb on - strand, within MPMX19_06017 at 170.898 kb on - strand, within MPMX19_06017 at 170.898 kb on - strand, within MPMX19_06017 at 170.918 kb on + strand, within MPMX19_06017 at 170.918 kb on + strand, within MPMX19_06017 at 170.918 kb on + strand, within MPMX19_06017 at 170.919 kb on - strand, within MPMX19_06017 at 170.919 kb on - strand, within MPMX19_06017 at 170.919 kb on - strand, within MPMX19_06017 at 171.018 kb on - strand, within MPMX19_06017 at 171.018 kb on - strand, within MPMX19_06017 at 171.062 kb on + strand at 171.062 kb on + strand at 171.062 kb on + strand at 171.062 kb on + strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.261 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.540 kb on + strand, within MPMX19_06018 at 171.540 kb on + strand, within MPMX19_06018 at 171.540 kb on + strand, within MPMX19_06018 at 171.541 kb on - strand, within MPMX19_06018 at 171.785 kb on + strand at 171.785 kb on + strand at 171.785 kb on + strand at 171.785 kb on + strand at 171.786 kb on - strand at 171.786 kb on - strand at 171.786 kb on - strand at 171.786 kb on - strand at 171.786 kb on - strand at 171.786 kb on - strand at 171.828 kb on - strand at 171.858 kb on + strand at 171.859 kb on - strand at 171.859 kb on - strand at 171.859 kb on - strand at 171.903 kb on + strand at 171.903 kb on + strand at 171.903 kb on + strand at 171.903 kb on + strand at 171.903 kb on + strand at 171.903 kb on + strand at 171.903 kb on + strand at 171.903 kb on + strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.967 kb on + strand, within MPMX19_06019 at 171.967 kb on + strand, within MPMX19_06019 at 171.967 kb on + strand, within MPMX19_06019 at 171.967 kb on + strand, within MPMX19_06019 at 171.968 kb on - strand, within MPMX19_06019 at 171.968 kb on - strand, within MPMX19_06019 at 171.968 kb on - strand, within MPMX19_06019 at 172.054 kb on + strand, within MPMX19_06019 at 172.054 kb on + strand, within MPMX19_06019 at 172.055 kb on - strand, within MPMX19_06019 at 172.066 kb on + strand, within MPMX19_06019 at 172.066 kb on + strand, within MPMX19_06019 at 172.067 kb on - strand, within MPMX19_06019 at 172.067 kb on - strand, within MPMX19_06019 at 172.067 kb on - strand, within MPMX19_06019 at 172.067 kb on - strand, within MPMX19_06019 at 172.067 kb on - strand, within MPMX19_06019
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 169,454 + -0.0 169,454 + -0.8 169,454 + -1.4 169,454 + +0.7 169,454 + -0.5 169,454 + -1.4 169,454 + -0.4 169,454 + +0.1 169,454 + -0.6 169,454 + -0.1 169,454 + -0.6 169,454 + -2.2 169,454 + +0.1 169,454 + -0.6 169,454 + -0.6 169,454 + -1.6 169,454 + -0.3 169,454 + +0.4 169,454 + -1.7 169,455 - -0.6 169,455 - -0.0 169,455 - -2.6 169,455 - +0.1 169,455 - -0.9 169,455 - -1.6 169,455 - -1.3 169,455 - -0.2 169,455 - +0.3 169,455 - -1.6 169,455 - -1.8 169,455 - +0.4 169,455 - +0.1 169,455 - -0.5 169,455 - -0.8 169,455 - -0.3 169,455 - -0.0 169,599 + MPMX19_06016 0.14 -0.1 169,599 + MPMX19_06016 0.14 -0.5 169,599 + MPMX19_06016 0.14 -1.6 169,599 + MPMX19_06016 0.14 -0.9 169,599 + MPMX19_06016 0.14 -0.8 169,599 + MPMX19_06016 0.14 +0.3 169,599 + MPMX19_06016 0.14 -1.5 169,599 + MPMX19_06016 0.14 +0.5 169,599 + MPMX19_06016 0.14 +0.1 169,812 + MPMX19_06016 0.40 +0.1 169,813 - MPMX19_06016 0.40 -2.1 169,813 - MPMX19_06016 0.40 -1.6 169,813 - MPMX19_06016 0.40 -0.5 169,813 - MPMX19_06016 0.40 -1.8 169,911 + MPMX19_06016 0.52 -0.1 169,911 + MPMX19_06016 0.52 -0.4 169,911 + MPMX19_06016 0.52 +0.1 169,911 + MPMX19_06016 0.52 -1.7 169,911 + MPMX19_06016 0.52 +0.3 169,911 + MPMX19_06016 0.52 -0.4 169,911 + MPMX19_06016 0.52 -0.2 169,911 + MPMX19_06016 0.52 -1.5 169,911 + MPMX19_06016 0.52 -0.8 169,911 + MPMX19_06016 0.52 -0.7 169,912 - MPMX19_06016 0.52 -0.3 169,912 - MPMX19_06016 0.52 -1.5 169,912 - MPMX19_06016 0.52 +0.7 169,912 - MPMX19_06016 0.52 -1.3 169,912 - MPMX19_06016 0.52 +0.2 169,912 - MPMX19_06016 0.52 -1.3 169,912 - MPMX19_06016 0.52 -1.1 169,912 - MPMX19_06016 0.52 +0.1 170,040 + MPMX19_06016 0.67 -0.2 170,040 + MPMX19_06016 0.67 +1.1 170,041 - MPMX19_06016 0.67 -0.1 170,049 + MPMX19_06016 0.68 -1.1 170,070 + MPMX19_06016 0.71 -0.5 170,070 + MPMX19_06016 0.71 -0.8 170,071 - MPMX19_06016 0.71 -0.7 170,071 - MPMX19_06016 0.71 -0.7 170,071 - MPMX19_06016 0.71 -2.1 170,106 + MPMX19_06016 0.75 -1.3 170,106 + MPMX19_06016 0.75 -0.8 170,106 + MPMX19_06016 0.75 -0.7 170,106 + MPMX19_06016 0.75 +0.7 170,106 + MPMX19_06016 0.75 +0.5 170,106 + MPMX19_06016 0.75 +1.1 170,106 + MPMX19_06016 0.75 -1.0 170,106 + MPMX19_06016 0.75 -0.6 170,106 + MPMX19_06016 0.75 -1.2 170,106 + MPMX19_06016 0.75 -0.6 170,106 + MPMX19_06016 0.75 -1.4 170,107 - MPMX19_06016 0.75 -0.4 170,107 - MPMX19_06016 0.75 +0.2 170,107 - MPMX19_06016 0.75 -0.2 170,107 - MPMX19_06016 0.75 -1.6 170,107 - MPMX19_06016 0.75 -1.3 170,142 + MPMX19_06016 0.80 -0.2 170,142 + MPMX19_06016 0.80 -0.2 170,142 + MPMX19_06016 0.80 -0.5 170,142 + MPMX19_06016 0.80 -2.4 170,142 + MPMX19_06016 0.80 -2.0 170,142 + MPMX19_06016 0.80 +0.9 170,142 + MPMX19_06016 0.80 -1.1 170,142 + MPMX19_06016 0.80 -2.6 170,142 + MPMX19_06016 0.80 -1.0 170,143 - MPMX19_06016 0.80 -1.1 170,143 - MPMX19_06016 0.80 -0.6 170,190 + MPMX19_06016 0.85 +0.1 170,190 + MPMX19_06016 0.85 +0.1 170,248 - +0.1 170,248 - +0.2 170,248 - +0.5 170,389 + -1.8 170,389 + -0.3 170,389 + -1.5 170,389 + -0.1 170,389 + -0.9 170,390 - +0.4 170,390 - -0.2 170,390 - +0.3 170,390 - -0.9 170,390 - -1.8 170,390 - -0.0 170,390 - +0.6 170,622 - MPMX19_06017 0.27 -0.5 170,801 + MPMX19_06017 0.55 -0.8 170,801 + MPMX19_06017 0.55 -0.1 170,801 + MPMX19_06017 0.55 +0.8 170,802 - MPMX19_06017 0.56 -1.4 170,802 - MPMX19_06017 0.56 -0.9 170,802 - MPMX19_06017 0.56 -0.9 170,802 - MPMX19_06017 0.56 -1.9 170,802 - MPMX19_06017 0.56 +0.1 170,802 - MPMX19_06017 0.56 -1.8 170,802 - MPMX19_06017 0.56 +0.1 170,802 - MPMX19_06017 0.56 -1.0 170,802 - MPMX19_06017 0.56 -0.4 170,802 - MPMX19_06017 0.56 -0.9 170,802 - MPMX19_06017 0.56 +0.7 170,802 - MPMX19_06017 0.56 +0.5 170,897 + MPMX19_06017 0.71 +0.7 170,898 - MPMX19_06017 0.71 -0.6 170,898 - MPMX19_06017 0.71 -0.3 170,898 - MPMX19_06017 0.71 +0.7 170,898 - MPMX19_06017 0.71 -0.9 170,918 + MPMX19_06017 0.74 +1.1 170,918 + MPMX19_06017 0.74 +0.4 170,918 + MPMX19_06017 0.74 +0.2 170,919 - MPMX19_06017 0.74 -1.8 170,919 - MPMX19_06017 0.74 -0.3 170,919 - MPMX19_06017 0.74 -1.9 171,018 - MPMX19_06017 0.90 -1.0 171,018 - MPMX19_06017 0.90 -0.6 171,062 + -0.6 171,062 + +1.7 171,062 + -0.3 171,062 + +0.7 171,063 - -0.0 171,063 - -1.3 171,063 - -0.8 171,063 - -1.3 171,063 - -0.1 171,063 - -1.3 171,063 - -0.3 171,100 + +0.4 171,100 + -1.5 171,100 + -0.5 171,100 + +0.8 171,100 + -1.3 171,100 + +1.3 171,100 + -0.3 171,100 + +0.2 171,100 + +0.7 171,100 + +0.7 171,100 + -0.6 171,100 + -0.1 171,100 + -0.8 171,100 + -0.8 171,100 + -0.5 171,101 - -0.1 171,101 - -0.3 171,101 - -0.0 171,101 - -1.3 171,101 - +0.1 171,101 - -1.1 171,101 - -0.1 171,101 - +0.2 171,101 - +0.5 171,101 - -0.5 171,261 + MPMX19_06018 0.27 +0.3 171,342 + MPMX19_06018 0.41 -0.4 171,342 + MPMX19_06018 0.41 +0.1 171,342 + MPMX19_06018 0.41 -0.6 171,342 + MPMX19_06018 0.41 +0.3 171,342 + MPMX19_06018 0.41 +0.1 171,342 + MPMX19_06018 0.41 +0.6 171,342 + MPMX19_06018 0.41 -0.5 171,342 + MPMX19_06018 0.41 -2.0 171,342 + MPMX19_06018 0.41 -0.9 171,342 + MPMX19_06018 0.41 +1.0 171,342 + MPMX19_06018 0.41 -0.6 171,342 + MPMX19_06018 0.41 -0.6 171,343 - MPMX19_06018 0.41 +0.5 171,343 - MPMX19_06018 0.41 -0.3 171,343 - MPMX19_06018 0.41 +0.4 171,343 - MPMX19_06018 0.41 +0.1 171,343 - MPMX19_06018 0.41 +1.0 171,343 - MPMX19_06018 0.41 +0.2 171,343 - MPMX19_06018 0.41 -1.1 171,343 - MPMX19_06018 0.41 -1.0 171,343 - MPMX19_06018 0.41 -0.5 171,343 - MPMX19_06018 0.41 +0.8 171,343 - MPMX19_06018 0.41 -1.1 171,343 - MPMX19_06018 0.41 +0.3 171,343 - MPMX19_06018 0.41 -0.0 171,343 - MPMX19_06018 0.41 -0.6 171,540 + MPMX19_06018 0.76 -0.3 171,540 + MPMX19_06018 0.76 -0.8 171,540 + MPMX19_06018 0.76 +0.5 171,541 - MPMX19_06018 0.76 -0.3 171,785 + +0.8 171,785 + +0.3 171,785 + +0.0 171,785 + +0.3 171,786 - +1.2 171,786 - -1.6 171,786 - -1.3 171,786 - -0.2 171,786 - -0.4 171,786 - -0.5 171,828 - +0.3 171,858 + -2.6 171,859 - +0.4 171,859 - -0.1 171,859 - +0.2 171,903 + -0.8 171,903 + +1.0 171,903 + -1.1 171,903 + -0.3 171,903 + +0.9 171,903 + +0.7 171,903 + -1.0 171,903 + -0.9 171,904 - -0.6 171,904 - -0.8 171,904 - -1.9 171,904 - -0.3 171,904 - +1.0 171,904 - -1.7 171,904 - -1.7 171,904 - +0.1 171,904 - -0.0 171,904 - -0.9 171,967 + MPMX19_06019 0.12 -1.6 171,967 + MPMX19_06019 0.12 -0.1 171,967 + MPMX19_06019 0.12 -1.1 171,967 + MPMX19_06019 0.12 -0.4 171,968 - MPMX19_06019 0.13 +1.0 171,968 - MPMX19_06019 0.13 +0.7 171,968 - MPMX19_06019 0.13 +1.4 172,054 + MPMX19_06019 0.33 -0.4 172,054 + MPMX19_06019 0.33 -0.2 172,055 - MPMX19_06019 0.34 -1.7 172,066 + MPMX19_06019 0.36 -0.8 172,066 + MPMX19_06019 0.36 -0.3 172,067 - MPMX19_06019 0.36 +0.9 172,067 - MPMX19_06019 0.36 +0.3 172,067 - MPMX19_06019 0.36 -1.0 172,067 - MPMX19_06019 0.36 -0.9 172,067 - MPMX19_06019 0.36 -1.3
Or see this region's nucleotide sequence