Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06000

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05998 and MPMX19_05999 are separated by 171 nucleotidesMPMX19_05999 and MPMX19_06000 are separated by 7 nucleotidesMPMX19_06000 and MPMX19_06001 are separated by 265 nucleotides MPMX19_05998: MPMX19_05998 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 151,862 to 153,568 _05998 MPMX19_05999: MPMX19_05999 - hypothetical protein, at 153,740 to 154,138 _05999 MPMX19_06000: MPMX19_06000 - Fructokinase, at 154,146 to 155,135 _06000 MPMX19_06001: MPMX19_06001 - hypothetical protein, at 155,401 to 156,162 _06001 Position (kb) 154 155 156Strain fitness (log2 ratio) -2 -1 0 1 2at 153.204 kb on - strand, within MPMX19_05998at 153.204 kb on - strand, within MPMX19_05998at 153.204 kb on - strand, within MPMX19_05998at 153.204 kb on - strand, within MPMX19_05998at 153.215 kb on + strand, within MPMX19_05998at 153.215 kb on + strand, within MPMX19_05998at 153.215 kb on + strand, within MPMX19_05998at 153.215 kb on + strand, within MPMX19_05998at 153.215 kb on + strand, within MPMX19_05998at 153.215 kb on + strand, within MPMX19_05998at 153.216 kb on - strand, within MPMX19_05998at 153.216 kb on - strand, within MPMX19_05998at 153.216 kb on - strand, within MPMX19_05998at 153.515 kb on + strandat 153.515 kb on + strandat 153.515 kb on + strandat 153.515 kb on + strandat 153.515 kb on + strandat 153.515 kb on + strandat 153.516 kb on - strandat 153.516 kb on - strandat 153.548 kb on + strandat 153.548 kb on + strandat 153.587 kb on + strandat 153.587 kb on + strandat 153.588 kb on - strandat 153.602 kb on - strandat 153.606 kb on + strandat 153.606 kb on + strandat 153.606 kb on + strandat 153.606 kb on + strandat 153.606 kb on + strandat 153.606 kb on + strandat 153.606 kb on + strandat 153.606 kb on + strandat 153.606 kb on + strandat 153.606 kb on + strandat 153.607 kb on - strandat 153.607 kb on - strandat 153.607 kb on - strandat 153.607 kb on - strandat 153.607 kb on - strandat 153.607 kb on - strandat 153.607 kb on - strandat 153.607 kb on - strandat 153.607 kb on - strandat 153.607 kb on - strandat 153.607 kb on - strandat 153.845 kb on + strand, within MPMX19_05999at 153.845 kb on + strand, within MPMX19_05999at 153.845 kb on + strand, within MPMX19_05999at 153.845 kb on + strand, within MPMX19_05999at 153.845 kb on + strand, within MPMX19_05999at 153.846 kb on - strand, within MPMX19_05999at 153.846 kb on - strand, within MPMX19_05999at 153.846 kb on - strand, within MPMX19_05999at 153.846 kb on - strand, within MPMX19_05999at 153.846 kb on - strand, within MPMX19_05999at 153.846 kb on - strand, within MPMX19_05999at 153.846 kb on - strand, within MPMX19_05999at 153.846 kb on - strand, within MPMX19_05999at 153.860 kb on + strand, within MPMX19_05999at 153.860 kb on + strand, within MPMX19_05999at 153.860 kb on + strand, within MPMX19_05999at 153.860 kb on + strand, within MPMX19_05999at 153.861 kb on - strand, within MPMX19_05999at 153.861 kb on - strand, within MPMX19_05999at 153.861 kb on - strand, within MPMX19_05999at 154.019 kb on + strand, within MPMX19_05999at 154.019 kb on + strand, within MPMX19_05999at 154.019 kb on + strand, within MPMX19_05999at 154.019 kb on + strand, within MPMX19_05999at 154.019 kb on + strand, within MPMX19_05999at 154.019 kb on + strand, within MPMX19_05999at 154.020 kb on - strand, within MPMX19_05999at 154.020 kb on - strand, within MPMX19_05999at 154.020 kb on - strand, within MPMX19_05999at 154.020 kb on - strand, within MPMX19_05999at 154.020 kb on - strand, within MPMX19_05999at 154.020 kb on - strand, within MPMX19_05999at 154.020 kb on - strand, within MPMX19_05999at 154.020 kb on - strand, within MPMX19_05999at 154.020 kb on - strand, within MPMX19_05999at 154.078 kb on + strand, within MPMX19_05999at 154.078 kb on + strand, within MPMX19_05999at 154.078 kb on + strand, within MPMX19_05999at 154.079 kb on - strand, within MPMX19_05999at 154.079 kb on - strand, within MPMX19_05999at 154.079 kb on - strand, within MPMX19_05999at 154.079 kb on - strand, within MPMX19_05999at 154.079 kb on - strand, within MPMX19_05999at 154.288 kb on + strand, within MPMX19_06000at 154.288 kb on + strand, within MPMX19_06000at 154.288 kb on + strand, within MPMX19_06000at 154.288 kb on + strand, within MPMX19_06000at 154.288 kb on + strand, within MPMX19_06000at 154.288 kb on + strand, within MPMX19_06000at 154.289 kb on - strand, within MPMX19_06000at 154.289 kb on - strand, within MPMX19_06000at 154.549 kb on + strand, within MPMX19_06000at 154.549 kb on + strand, within MPMX19_06000at 154.549 kb on + strand, within MPMX19_06000at 154.549 kb on + strand, within MPMX19_06000at 154.550 kb on - strand, within MPMX19_06000at 154.550 kb on - strand, within MPMX19_06000at 154.550 kb on - strand, within MPMX19_06000at 154.550 kb on - strand, within MPMX19_06000at 154.550 kb on - strand, within MPMX19_06000at 154.550 kb on - strand, within MPMX19_06000at 154.550 kb on - strand, within MPMX19_06000at 154.550 kb on - strand, within MPMX19_06000at 154.550 kb on - strand, within MPMX19_06000at 154.969 kb on + strand, within MPMX19_06000at 154.970 kb on - strand, within MPMX19_06000at 154.970 kb on - strand, within MPMX19_06000at 154.970 kb on - strand, within MPMX19_06000at 154.970 kb on - strand, within MPMX19_06000at 154.970 kb on - strand, within MPMX19_06000at 154.970 kb on - strand, within MPMX19_06000at 154.970 kb on - strand, within MPMX19_06000at 154.970 kb on - strand, within MPMX19_06000at 155.087 kb on - strandat 155.173 kb on - strandat 155.173 kb on - strandat 155.379 kb on + strandat 155.379 kb on + strandat 155.581 kb on + strand, within MPMX19_06001at 155.581 kb on + strand, within MPMX19_06001at 155.581 kb on + strand, within MPMX19_06001at 155.581 kb on + strand, within MPMX19_06001at 155.581 kb on + strand, within MPMX19_06001at 155.582 kb on - strand, within MPMX19_06001at 155.582 kb on - strand, within MPMX19_06001at 155.582 kb on - strand, within MPMX19_06001at 155.758 kb on + strand, within MPMX19_06001at 155.758 kb on + strand, within MPMX19_06001at 155.758 kb on + strand, within MPMX19_06001at 155.758 kb on + strand, within MPMX19_06001at 155.759 kb on - strand, within MPMX19_06001at 155.759 kb on - strand, within MPMX19_06001at 155.866 kb on + strand, within MPMX19_06001at 155.867 kb on - strand, within MPMX19_06001at 155.867 kb on - strand, within MPMX19_06001

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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153,204 - MPMX19_05998 0.79 -0.6
153,204 - MPMX19_05998 0.79 -0.9
153,204 - MPMX19_05998 0.79 +0.0
153,204 - MPMX19_05998 0.79 -0.1
153,215 + MPMX19_05998 0.79 -1.5
153,215 + MPMX19_05998 0.79 +0.4
153,215 + MPMX19_05998 0.79 +0.5
153,215 + MPMX19_05998 0.79 -1.0
153,215 + MPMX19_05998 0.79 -0.3
153,215 + MPMX19_05998 0.79 -0.4
153,216 - MPMX19_05998 0.79 -1.1
153,216 - MPMX19_05998 0.79 -1.0
153,216 - MPMX19_05998 0.79 +2.3
153,515 + +0.1
153,515 + +0.0
153,515 + -1.3
153,515 + -0.6
153,515 + -0.8
153,515 + -1.8
153,516 - -0.6
153,516 - -0.3
153,548 + -0.3
153,548 + -1.9
153,587 + -0.4
153,587 + -2.6
153,588 - -1.2
153,602 - +1.2
153,606 + -1.1
153,606 + -0.6
153,606 + -0.6
153,606 + -0.7
153,606 + -0.4
153,606 + +0.9
153,606 + -2.4
153,606 + +0.1
153,606 + -0.4
153,606 + -0.5
153,607 - -0.8
153,607 - -0.3
153,607 - +0.8
153,607 - -0.4
153,607 - -0.4
153,607 - -0.3
153,607 - -0.8
153,607 - -1.8
153,607 - -0.9
153,607 - +1.3
153,607 - +0.5
153,845 + MPMX19_05999 0.26 +0.2
153,845 + MPMX19_05999 0.26 -0.6
153,845 + MPMX19_05999 0.26 +0.4
153,845 + MPMX19_05999 0.26 +0.8
153,845 + MPMX19_05999 0.26 -0.4
153,846 - MPMX19_05999 0.27 -0.8
153,846 - MPMX19_05999 0.27 -0.7
153,846 - MPMX19_05999 0.27 -1.8
153,846 - MPMX19_05999 0.27 +0.5
153,846 - MPMX19_05999 0.27 +0.7
153,846 - MPMX19_05999 0.27 -0.9
153,846 - MPMX19_05999 0.27 +0.0
153,846 - MPMX19_05999 0.27 -1.0
153,860 + MPMX19_05999 0.30 -0.4
153,860 + MPMX19_05999 0.30 -0.0
153,860 + MPMX19_05999 0.30 +0.3
153,860 + MPMX19_05999 0.30 +0.5
153,861 - MPMX19_05999 0.30 -0.1
153,861 - MPMX19_05999 0.30 -1.8
153,861 - MPMX19_05999 0.30 -0.6
154,019 + MPMX19_05999 0.70 -0.1
154,019 + MPMX19_05999 0.70 -0.2
154,019 + MPMX19_05999 0.70 -0.9
154,019 + MPMX19_05999 0.70 -0.3
154,019 + MPMX19_05999 0.70 -0.8
154,019 + MPMX19_05999 0.70 -0.4
154,020 - MPMX19_05999 0.70 +0.4
154,020 - MPMX19_05999 0.70 -1.8
154,020 - MPMX19_05999 0.70 -0.2
154,020 - MPMX19_05999 0.70 -0.3
154,020 - MPMX19_05999 0.70 -0.0
154,020 - MPMX19_05999 0.70 -0.6
154,020 - MPMX19_05999 0.70 +2.0
154,020 - MPMX19_05999 0.70 -1.1
154,020 - MPMX19_05999 0.70 -0.3
154,078 + MPMX19_05999 0.85 -1.5
154,078 + MPMX19_05999 0.85 -0.6
154,078 + MPMX19_05999 0.85 +0.0
154,079 - MPMX19_05999 0.85 +0.3
154,079 - MPMX19_05999 0.85 +0.4
154,079 - MPMX19_05999 0.85 -2.5
154,079 - MPMX19_05999 0.85 +0.0
154,079 - MPMX19_05999 0.85 -1.5
154,288 + MPMX19_06000 0.14 -1.1
154,288 + MPMX19_06000 0.14 -1.3
154,288 + MPMX19_06000 0.14 -0.0
154,288 + MPMX19_06000 0.14 -1.0
154,288 + MPMX19_06000 0.14 -0.8
154,288 + MPMX19_06000 0.14 +1.0
154,289 - MPMX19_06000 0.14 -1.2
154,289 - MPMX19_06000 0.14 -1.5
154,549 + MPMX19_06000 0.41 -1.6
154,549 + MPMX19_06000 0.41 -0.9
154,549 + MPMX19_06000 0.41 -0.9
154,549 + MPMX19_06000 0.41 -0.5
154,550 - MPMX19_06000 0.41 -1.3
154,550 - MPMX19_06000 0.41 -2.2
154,550 - MPMX19_06000 0.41 +0.1
154,550 - MPMX19_06000 0.41 -0.3
154,550 - MPMX19_06000 0.41 -0.0
154,550 - MPMX19_06000 0.41 -1.5
154,550 - MPMX19_06000 0.41 +1.3
154,550 - MPMX19_06000 0.41 -0.5
154,550 - MPMX19_06000 0.41 +1.1
154,969 + MPMX19_06000 0.83 -0.4
154,970 - MPMX19_06000 0.83 +1.0
154,970 - MPMX19_06000 0.83 +0.5
154,970 - MPMX19_06000 0.83 +0.1
154,970 - MPMX19_06000 0.83 -0.9
154,970 - MPMX19_06000 0.83 -1.0
154,970 - MPMX19_06000 0.83 -0.2
154,970 - MPMX19_06000 0.83 -1.0
154,970 - MPMX19_06000 0.83 -1.7
155,087 - +0.7
155,173 - +0.5
155,173 - -0.4
155,379 + +0.4
155,379 + +0.3
155,581 + MPMX19_06001 0.24 -2.4
155,581 + MPMX19_06001 0.24 -0.7
155,581 + MPMX19_06001 0.24 -2.4
155,581 + MPMX19_06001 0.24 -0.8
155,581 + MPMX19_06001 0.24 +1.0
155,582 - MPMX19_06001 0.24 +0.8
155,582 - MPMX19_06001 0.24 -0.0
155,582 - MPMX19_06001 0.24 -1.1
155,758 + MPMX19_06001 0.47 -1.3
155,758 + MPMX19_06001 0.47 -1.6
155,758 + MPMX19_06001 0.47 -0.4
155,758 + MPMX19_06001 0.47 +0.4
155,759 - MPMX19_06001 0.47 +0.4
155,759 - MPMX19_06001 0.47 -0.5
155,866 + MPMX19_06001 0.61 -0.3
155,867 - MPMX19_06001 0.61 +0.3
155,867 - MPMX19_06001 0.61 +0.7

Or see this region's nucleotide sequence