Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05997

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05995 and MPMX19_05996 are separated by 114 nucleotidesMPMX19_05996 and MPMX19_05997 are separated by 55 nucleotidesMPMX19_05997 and MPMX19_05998 overlap by 4 nucleotides MPMX19_05995: MPMX19_05995 - hypothetical protein, at 148,982 to 150,598 _05995 MPMX19_05996: MPMX19_05996 - Dodecaprenyl-phosphate galacturonate synthase, at 150,713 to 151,474 _05996 MPMX19_05997: MPMX19_05997 - hypothetical protein, at 151,530 to 151,865 _05997 MPMX19_05998: MPMX19_05998 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 151,862 to 153,568 _05998 Position (kb) 151 152Strain fitness (log2 ratio) -2 -1 0 1 2at 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.586 kb on + strandat 150.596 kb on + strandat 150.597 kb on - strandat 150.597 kb on - strandat 150.597 kb on - strandat 150.597 kb on - strandat 150.597 kb on - strandat 150.597 kb on - strandat 150.738 kb on - strandat 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.329 kb on - strand, within MPMX19_05996at 151.329 kb on - strand, within MPMX19_05996at 151.373 kb on + strand, within MPMX19_05996at 151.373 kb on + strand, within MPMX19_05996at 151.373 kb on + strand, within MPMX19_05996at 151.424 kb on + strandat 151.424 kb on + strandat 151.692 kb on + strand, within MPMX19_05997at 151.693 kb on - strand, within MPMX19_05997at 151.729 kb on - strand, within MPMX19_05997at 151.738 kb on - strand, within MPMX19_05997at 151.788 kb on + strand, within MPMX19_05997at 151.789 kb on - strand, within MPMX19_05997at 151.803 kb on + strand, within MPMX19_05997at 151.804 kb on - strand, within MPMX19_05997at 151.804 kb on - strand, within MPMX19_05997at 151.804 kb on - strand, within MPMX19_05997at 151.922 kb on + strandat 151.922 kb on + strandat 151.922 kb on + strandat 151.922 kb on + strandat 151.922 kb on + strandat 151.922 kb on + strandat 151.922 kb on + strandat 151.923 kb on - strandat 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.045 kb on + strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.046 kb on - strand, within MPMX19_05998at 152.099 kb on + strand, within MPMX19_05998at 152.100 kb on - strand, within MPMX19_05998at 152.100 kb on - strand, within MPMX19_05998at 152.387 kb on + strand, within MPMX19_05998at 152.388 kb on - strand, within MPMX19_05998at 152.388 kb on - strand, within MPMX19_05998at 152.729 kb on + strand, within MPMX19_05998at 152.729 kb on + strand, within MPMX19_05998at 152.730 kb on - strand, within MPMX19_05998at 152.737 kb on + strand, within MPMX19_05998at 152.738 kb on - strand, within MPMX19_05998

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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150,551 + -1.3
150,551 + +0.3
150,551 + -1.1
150,551 + +0.3
150,551 + +0.1
150,551 + +1.3
150,551 + -0.6
150,551 + -0.3
150,551 + -0.3
150,551 + +1.0
150,551 + -0.1
150,551 + -0.1
150,551 + -0.4
150,552 - +0.2
150,552 - +0.1
150,552 - -0.9
150,552 - -0.5
150,552 - -0.8
150,552 - +0.7
150,552 - +1.3
150,552 - +0.7
150,552 - +0.0
150,552 - +0.3
150,552 - +0.5
150,552 - -0.4
150,552 - +0.2
150,552 - -0.3
150,586 + -0.3
150,596 + +0.0
150,597 - -0.8
150,597 - -1.1
150,597 - +1.1
150,597 - +0.5
150,597 - -0.3
150,597 - -0.6
150,738 - +0.8
151,328 + MPMX19_05996 0.81 -0.9
151,328 + MPMX19_05996 0.81 -0.5
151,328 + MPMX19_05996 0.81 +0.1
151,328 + MPMX19_05996 0.81 -0.3
151,328 + MPMX19_05996 0.81 +0.7
151,328 + MPMX19_05996 0.81 -0.1
151,328 + MPMX19_05996 0.81 -0.1
151,328 + MPMX19_05996 0.81 +0.8
151,328 + MPMX19_05996 0.81 -0.6
151,328 + MPMX19_05996 0.81 +1.1
151,328 + MPMX19_05996 0.81 -1.0
151,328 + MPMX19_05996 0.81 -0.3
151,328 + MPMX19_05996 0.81 +0.4
151,329 - MPMX19_05996 0.81 +1.7
151,329 - MPMX19_05996 0.81 -1.6
151,373 + MPMX19_05996 0.87 -1.5
151,373 + MPMX19_05996 0.87 +0.4
151,373 + MPMX19_05996 0.87 -0.6
151,424 + +0.2
151,424 + -0.9
151,692 + MPMX19_05997 0.48 -1.7
151,693 - MPMX19_05997 0.49 -0.2
151,729 - MPMX19_05997 0.59 +0.6
151,738 - MPMX19_05997 0.62 +0.1
151,788 + MPMX19_05997 0.77 -1.8
151,789 - MPMX19_05997 0.77 +0.3
151,803 + MPMX19_05997 0.81 -1.1
151,804 - MPMX19_05997 0.82 -1.6
151,804 - MPMX19_05997 0.82 -2.0
151,804 - MPMX19_05997 0.82 -0.3
151,922 + -1.9
151,922 + -0.1
151,922 + -1.6
151,922 + +0.1
151,922 + -1.1
151,922 + +0.4
151,922 + +0.4
151,923 - +2.1
152,045 + MPMX19_05998 0.11 +1.2
152,045 + MPMX19_05998 0.11 -1.0
152,045 + MPMX19_05998 0.11 -0.9
152,045 + MPMX19_05998 0.11 +0.5
152,045 + MPMX19_05998 0.11 -0.9
152,045 + MPMX19_05998 0.11 +0.0
152,045 + MPMX19_05998 0.11 +1.1
152,045 + MPMX19_05998 0.11 +0.5
152,045 + MPMX19_05998 0.11 -0.0
152,045 + MPMX19_05998 0.11 +0.5
152,045 + MPMX19_05998 0.11 -1.5
152,045 + MPMX19_05998 0.11 -1.5
152,045 + MPMX19_05998 0.11 -1.0
152,046 - MPMX19_05998 0.11 -0.1
152,046 - MPMX19_05998 0.11 +0.4
152,046 - MPMX19_05998 0.11 -0.2
152,046 - MPMX19_05998 0.11 -0.6
152,046 - MPMX19_05998 0.11 -0.3
152,046 - MPMX19_05998 0.11 +1.0
152,046 - MPMX19_05998 0.11 +1.0
152,046 - MPMX19_05998 0.11 -1.8
152,046 - MPMX19_05998 0.11 -0.6
152,046 - MPMX19_05998 0.11 +0.1
152,046 - MPMX19_05998 0.11 -1.5
152,046 - MPMX19_05998 0.11 -1.6
152,099 + MPMX19_05998 0.14 +0.3
152,100 - MPMX19_05998 0.14 +0.7
152,100 - MPMX19_05998 0.14 +0.7
152,387 + MPMX19_05998 0.31 -0.5
152,388 - MPMX19_05998 0.31 -0.5
152,388 - MPMX19_05998 0.31 +1.0
152,729 + MPMX19_05998 0.51 +0.1
152,729 + MPMX19_05998 0.51 -1.2
152,730 - MPMX19_05998 0.51 -2.0
152,737 + MPMX19_05998 0.51 -0.3
152,738 - MPMX19_05998 0.51 -2.0

Or see this region's nucleotide sequence