Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05936 and MPMX19_05937 are separated by 146 nucleotides MPMX19_05937 and MPMX19_05938 are separated by 276 nucleotides
MPMX19_05936: MPMX19_05936 - Alpha-galactosidase, at 78,582 to 79,880
_05936
MPMX19_05937: MPMX19_05937 - hypothetical protein, at 80,027 to 80,833
_05937
MPMX19_05938: MPMX19_05938 - Beta-glucosidase A, at 81,110 to 82,474
_05938
Position (kb) 80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 79.087 kb on + strand, within MPMX19_05936 at 79.088 kb on - strand, within MPMX19_05936 at 79.088 kb on - strand, within MPMX19_05936 at 79.088 kb on - strand, within MPMX19_05936 at 79.088 kb on - strand, within MPMX19_05936 at 79.213 kb on + strand, within MPMX19_05936 at 79.213 kb on + strand, within MPMX19_05936 at 79.213 kb on + strand, within MPMX19_05936 at 79.213 kb on + strand, within MPMX19_05936 at 79.214 kb on - strand, within MPMX19_05936 at 79.214 kb on - strand, within MPMX19_05936 at 79.214 kb on - strand, within MPMX19_05936 at 79.214 kb on - strand, within MPMX19_05936 at 79.745 kb on + strand, within MPMX19_05936 at 79.934 kb on + strand at 79.935 kb on - strand at 79.935 kb on - strand at 79.935 kb on - strand at 79.979 kb on + strand at 79.979 kb on + strand at 79.979 kb on + strand at 79.979 kb on + strand at 79.979 kb on + strand at 79.979 kb on + strand at 79.979 kb on + strand at 79.980 kb on - strand at 79.980 kb on - strand at 79.980 kb on - strand at 79.980 kb on - strand at 80.028 kb on + strand at 80.028 kb on + strand at 80.028 kb on + strand at 80.028 kb on + strand at 80.029 kb on - strand at 80.029 kb on - strand at 80.040 kb on + strand at 80.040 kb on + strand at 80.040 kb on + strand at 80.041 kb on - strand at 80.041 kb on - strand at 80.041 kb on - strand at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.216 kb on + strand, within MPMX19_05937 at 80.216 kb on + strand, within MPMX19_05937 at 80.217 kb on - strand, within MPMX19_05937 at 80.259 kb on + strand, within MPMX19_05937 at 80.259 kb on + strand, within MPMX19_05937 at 80.260 kb on - strand, within MPMX19_05937 at 80.301 kb on + strand, within MPMX19_05937 at 80.302 kb on - strand, within MPMX19_05937 at 80.302 kb on - strand, within MPMX19_05937 at 80.773 kb on + strand at 80.907 kb on + strand at 80.907 kb on + strand at 80.908 kb on - strand at 81.105 kb on + strand at 81.105 kb on + strand at 81.106 kb on - strand at 81.106 kb on - strand at 81.106 kb on - strand at 81.203 kb on + strand at 81.317 kb on + strand, within MPMX19_05938 at 81.317 kb on + strand, within MPMX19_05938 at 81.317 kb on + strand, within MPMX19_05938 at 81.318 kb on - strand, within MPMX19_05938 at 81.371 kb on + strand, within MPMX19_05938 at 81.371 kb on + strand, within MPMX19_05938 at 81.371 kb on + strand, within MPMX19_05938 at 81.371 kb on + strand, within MPMX19_05938 at 81.371 kb on + strand, within MPMX19_05938 at 81.372 kb on - strand, within MPMX19_05938 at 81.446 kb on + strand, within MPMX19_05938 at 81.446 kb on + strand, within MPMX19_05938 at 81.447 kb on - strand, within MPMX19_05938 at 81.503 kb on + strand, within MPMX19_05938 at 81.503 kb on + strand, within MPMX19_05938 at 81.503 kb on + strand, within MPMX19_05938 at 81.503 kb on + strand, within MPMX19_05938 at 81.503 kb on + strand, within MPMX19_05938 at 81.503 kb on + strand, within MPMX19_05938 at 81.503 kb on + strand, within MPMX19_05938 at 81.504 kb on - strand, within MPMX19_05938 at 81.504 kb on - strand, within MPMX19_05938 at 81.504 kb on - strand, within MPMX19_05938 at 81.504 kb on - strand, within MPMX19_05938 at 81.504 kb on - strand, within MPMX19_05938 at 81.504 kb on - strand, within MPMX19_05938 at 81.504 kb on - strand, within MPMX19_05938 at 81.504 kb on - strand, within MPMX19_05938 at 81.504 kb on - strand, within MPMX19_05938 at 81.581 kb on + strand, within MPMX19_05938 at 81.581 kb on + strand, within MPMX19_05938 at 81.581 kb on + strand, within MPMX19_05938 at 81.581 kb on + strand, within MPMX19_05938 at 81.581 kb on + strand, within MPMX19_05938 at 81.581 kb on + strand, within MPMX19_05938 at 81.581 kb on + strand, within MPMX19_05938 at 81.581 kb on + strand, within MPMX19_05938 at 81.581 kb on + strand, within MPMX19_05938 at 81.582 kb on - strand, within MPMX19_05938 at 81.582 kb on - strand, within MPMX19_05938 at 81.582 kb on - strand, within MPMX19_05938 at 81.582 kb on - strand, within MPMX19_05938 at 81.582 kb on - strand, within MPMX19_05938 at 81.582 kb on - strand, within MPMX19_05938 at 81.582 kb on - strand, within MPMX19_05938 at 81.582 kb on - strand, within MPMX19_05938 at 81.668 kb on + strand, within MPMX19_05938
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 79,087 + MPMX19_05936 0.39 +1.0 79,088 - MPMX19_05936 0.39 -0.4 79,088 - MPMX19_05936 0.39 -1.1 79,088 - MPMX19_05936 0.39 -0.6 79,088 - MPMX19_05936 0.39 +0.4 79,213 + MPMX19_05936 0.49 -0.2 79,213 + MPMX19_05936 0.49 +2.1 79,213 + MPMX19_05936 0.49 -2.6 79,213 + MPMX19_05936 0.49 -0.3 79,214 - MPMX19_05936 0.49 +0.7 79,214 - MPMX19_05936 0.49 -0.1 79,214 - MPMX19_05936 0.49 -0.0 79,214 - MPMX19_05936 0.49 +1.7 79,745 + MPMX19_05936 0.90 -1.1 79,934 + -0.5 79,935 - +0.6 79,935 - +0.3 79,935 - -0.8 79,979 + -1.1 79,979 + +0.8 79,979 + -1.2 79,979 + -0.5 79,979 + -0.5 79,979 + +0.2 79,979 + -0.1 79,980 - +0.4 79,980 - -0.2 79,980 - -0.1 79,980 - -0.6 80,028 + -0.0 80,028 + +0.1 80,028 + +0.2 80,028 + -1.3 80,029 - +0.9 80,029 - -1.1 80,040 + +1.0 80,040 + +0.1 80,040 + -0.8 80,041 - -0.6 80,041 - -2.3 80,041 - -1.3 80,120 + MPMX19_05937 0.12 +0.4 80,120 + MPMX19_05937 0.12 -1.6 80,120 + MPMX19_05937 0.12 +1.4 80,120 + MPMX19_05937 0.12 -2.1 80,120 + MPMX19_05937 0.12 +0.1 80,120 + MPMX19_05937 0.12 -0.2 80,120 + MPMX19_05937 0.12 -0.3 80,120 + MPMX19_05937 0.12 -0.4 80,120 + MPMX19_05937 0.12 -0.6 80,121 - MPMX19_05937 0.12 -1.2 80,121 - MPMX19_05937 0.12 -0.2 80,121 - MPMX19_05937 0.12 -0.5 80,121 - MPMX19_05937 0.12 -2.1 80,121 - MPMX19_05937 0.12 -0.3 80,121 - MPMX19_05937 0.12 -1.4 80,121 - MPMX19_05937 0.12 -0.9 80,121 - MPMX19_05937 0.12 -0.6 80,121 - MPMX19_05937 0.12 +1.1 80,121 - MPMX19_05937 0.12 +0.9 80,121 - MPMX19_05937 0.12 -0.3 80,121 - MPMX19_05937 0.12 +0.6 80,121 - MPMX19_05937 0.12 +0.7 80,121 - MPMX19_05937 0.12 -0.7 80,216 + MPMX19_05937 0.23 +0.8 80,216 + MPMX19_05937 0.23 +1.0 80,217 - MPMX19_05937 0.24 -0.1 80,259 + MPMX19_05937 0.29 -0.6 80,259 + MPMX19_05937 0.29 -0.9 80,260 - MPMX19_05937 0.29 +0.3 80,301 + MPMX19_05937 0.34 -2.3 80,302 - MPMX19_05937 0.34 +1.7 80,302 - MPMX19_05937 0.34 -1.5 80,773 + -0.1 80,907 + -0.3 80,907 + -0.3 80,908 - -0.5 81,105 + -1.5 81,105 + -1.3 81,106 - +0.2 81,106 - +0.1 81,106 - -1.0 81,203 + +1.2 81,317 + MPMX19_05938 0.15 -0.3 81,317 + MPMX19_05938 0.15 -1.0 81,317 + MPMX19_05938 0.15 -1.1 81,318 - MPMX19_05938 0.15 -0.6 81,371 + MPMX19_05938 0.19 +0.4 81,371 + MPMX19_05938 0.19 +0.4 81,371 + MPMX19_05938 0.19 -1.2 81,371 + MPMX19_05938 0.19 -0.4 81,371 + MPMX19_05938 0.19 -1.9 81,372 - MPMX19_05938 0.19 -0.5 81,446 + MPMX19_05938 0.25 +1.4 81,446 + MPMX19_05938 0.25 +0.2 81,447 - MPMX19_05938 0.25 -0.3 81,503 + MPMX19_05938 0.29 +0.1 81,503 + MPMX19_05938 0.29 -0.2 81,503 + MPMX19_05938 0.29 +0.1 81,503 + MPMX19_05938 0.29 -0.9 81,503 + MPMX19_05938 0.29 -1.1 81,503 + MPMX19_05938 0.29 -0.2 81,503 + MPMX19_05938 0.29 -0.3 81,504 - MPMX19_05938 0.29 -0.8 81,504 - MPMX19_05938 0.29 +0.2 81,504 - MPMX19_05938 0.29 -0.3 81,504 - MPMX19_05938 0.29 -1.1 81,504 - MPMX19_05938 0.29 -0.8 81,504 - MPMX19_05938 0.29 -0.0 81,504 - MPMX19_05938 0.29 +0.3 81,504 - MPMX19_05938 0.29 +0.1 81,504 - MPMX19_05938 0.29 -0.9 81,581 + MPMX19_05938 0.35 +0.1 81,581 + MPMX19_05938 0.35 -1.5 81,581 + MPMX19_05938 0.35 -1.0 81,581 + MPMX19_05938 0.35 -1.5 81,581 + MPMX19_05938 0.35 -2.8 81,581 + MPMX19_05938 0.35 -0.0 81,581 + MPMX19_05938 0.35 -2.1 81,581 + MPMX19_05938 0.35 -0.5 81,581 + MPMX19_05938 0.35 -0.4 81,582 - MPMX19_05938 0.35 -0.3 81,582 - MPMX19_05938 0.35 -1.6 81,582 - MPMX19_05938 0.35 -2.8 81,582 - MPMX19_05938 0.35 -0.1 81,582 - MPMX19_05938 0.35 -0.0 81,582 - MPMX19_05938 0.35 +1.0 81,582 - MPMX19_05938 0.35 +0.5 81,582 - MPMX19_05938 0.35 -1.1 81,668 + MPMX19_05938 0.41 -1.1
Or see this region's nucleotide sequence