Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05934 and MPMX19_05935 are separated by 222 nucleotides MPMX19_05935 and MPMX19_05936 are separated by 7 nucleotides
MPMX19_05934: MPMX19_05934 - Arylesterase, at 76,379 to 77,206
_05934
MPMX19_05935: MPMX19_05935 - sugar efflux transporter, at 77,429 to 78,574
_05935
MPMX19_05936: MPMX19_05936 - Alpha-galactosidase, at 78,582 to 79,880
_05936
Position (kb) 77
78
79 Strain fitness (log2 ratio) -2
-1
0
1
2 at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.875 kb on + strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 77.074 kb on - strand, within MPMX19_05934 at 77.074 kb on - strand, within MPMX19_05934 at 77.074 kb on - strand, within MPMX19_05934 at 77.074 kb on - strand, within MPMX19_05934 at 77.166 kb on + strand at 77.166 kb on + strand at 77.167 kb on - strand at 77.167 kb on - strand at 77.167 kb on - strand at 77.167 kb on - strand at 77.167 kb on - strand at 77.167 kb on - strand at 77.285 kb on + strand at 77.285 kb on + strand at 77.285 kb on + strand at 77.285 kb on + strand at 77.286 kb on - strand at 77.286 kb on - strand at 77.286 kb on - strand at 77.357 kb on + strand at 77.378 kb on + strand at 77.379 kb on - strand at 77.388 kb on - strand at 77.564 kb on + strand, within MPMX19_05935 at 77.564 kb on + strand, within MPMX19_05935 at 77.564 kb on + strand, within MPMX19_05935 at 77.565 kb on - strand, within MPMX19_05935 at 77.565 kb on - strand, within MPMX19_05935 at 77.565 kb on - strand, within MPMX19_05935 at 77.565 kb on - strand, within MPMX19_05935 at 77.576 kb on + strand, within MPMX19_05935 at 77.577 kb on - strand, within MPMX19_05935 at 77.577 kb on - strand, within MPMX19_05935 at 77.577 kb on - strand, within MPMX19_05935 at 77.577 kb on - strand, within MPMX19_05935 at 77.696 kb on + strand, within MPMX19_05935 at 77.696 kb on + strand, within MPMX19_05935 at 77.697 kb on - strand, within MPMX19_05935 at 77.697 kb on - strand, within MPMX19_05935 at 77.789 kb on + strand, within MPMX19_05935 at 77.789 kb on + strand, within MPMX19_05935 at 77.790 kb on - strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.015 kb on - strand, within MPMX19_05935 at 78.015 kb on - strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.192 kb on - strand, within MPMX19_05935 at 78.192 kb on - strand, within MPMX19_05935 at 78.275 kb on + strand, within MPMX19_05935 at 78.275 kb on + strand, within MPMX19_05935 at 78.276 kb on - strand, within MPMX19_05935 at 78.276 kb on - strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.467 kb on + strand at 78.467 kb on + strand at 78.467 kb on + strand at 78.467 kb on + strand at 78.468 kb on - strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.572 kb on + strand at 78.601 kb on + strand at 78.601 kb on + strand at 78.602 kb on - strand at 78.602 kb on - strand at 78.602 kb on - strand at 78.602 kb on - strand at 78.602 kb on - strand at 78.602 kb on - strand at 78.633 kb on + strand at 78.633 kb on + strand at 79.087 kb on + strand, within MPMX19_05936 at 79.088 kb on - strand, within MPMX19_05936 at 79.088 kb on - strand, within MPMX19_05936 at 79.088 kb on - strand, within MPMX19_05936 at 79.088 kb on - strand, within MPMX19_05936 at 79.213 kb on + strand, within MPMX19_05936 at 79.213 kb on + strand, within MPMX19_05936 at 79.213 kb on + strand, within MPMX19_05936 at 79.213 kb on + strand, within MPMX19_05936 at 79.214 kb on - strand, within MPMX19_05936 at 79.214 kb on - strand, within MPMX19_05936 at 79.214 kb on - strand, within MPMX19_05936 at 79.214 kb on - strand, within MPMX19_05936
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 76,458 + -0.6 76,458 + +1.0 76,458 + -0.8 76,458 + -0.3 76,458 + -1.3 76,458 + -0.2 76,458 + -0.7 76,458 + +0.4 76,458 + +0.1 76,458 + -0.4 76,459 - +0.3 76,459 - +0.1 76,459 - -0.1 76,459 - -0.3 76,459 - +1.3 76,459 - +0.7 76,459 - -1.6 76,459 - -0.5 76,875 + MPMX19_05934 0.60 -1.6 76,876 - MPMX19_05934 0.60 -0.4 76,876 - MPMX19_05934 0.60 -0.3 76,876 - MPMX19_05934 0.60 +0.8 76,876 - MPMX19_05934 0.60 -0.6 76,876 - MPMX19_05934 0.60 +1.1 76,876 - MPMX19_05934 0.60 +0.9 76,876 - MPMX19_05934 0.60 -0.9 77,074 - MPMX19_05934 0.84 -2.2 77,074 - MPMX19_05934 0.84 -0.1 77,074 - MPMX19_05934 0.84 -0.7 77,074 - MPMX19_05934 0.84 -0.5 77,166 + +0.8 77,166 + +0.4 77,167 - -0.3 77,167 - -2.1 77,167 - -1.6 77,167 - -0.6 77,167 - +0.1 77,167 - -0.6 77,285 + -1.3 77,285 + -1.4 77,285 + +1.1 77,285 + -1.3 77,286 - -0.6 77,286 - -0.1 77,286 - -0.5 77,357 + -1.9 77,378 + -1.3 77,379 - +1.2 77,388 - -0.1 77,564 + MPMX19_05935 0.12 -1.5 77,564 + MPMX19_05935 0.12 +0.1 77,564 + MPMX19_05935 0.12 -1.1 77,565 - MPMX19_05935 0.12 -0.6 77,565 - MPMX19_05935 0.12 -1.8 77,565 - MPMX19_05935 0.12 -1.2 77,565 - MPMX19_05935 0.12 +0.7 77,576 + MPMX19_05935 0.13 -0.3 77,577 - MPMX19_05935 0.13 -1.3 77,577 - MPMX19_05935 0.13 -1.9 77,577 - MPMX19_05935 0.13 -0.2 77,577 - MPMX19_05935 0.13 +0.4 77,696 + MPMX19_05935 0.23 +0.5 77,696 + MPMX19_05935 0.23 -0.2 77,697 - MPMX19_05935 0.23 +0.5 77,697 - MPMX19_05935 0.23 -2.4 77,789 + MPMX19_05935 0.31 -2.0 77,789 + MPMX19_05935 0.31 -0.9 77,790 - MPMX19_05935 0.32 -0.3 78,014 + MPMX19_05935 0.51 -0.5 78,014 + MPMX19_05935 0.51 +1.0 78,014 + MPMX19_05935 0.51 -2.5 78,014 + MPMX19_05935 0.51 -1.2 78,014 + MPMX19_05935 0.51 +0.6 78,015 - MPMX19_05935 0.51 +1.1 78,015 - MPMX19_05935 0.51 -0.1 78,191 + MPMX19_05935 0.66 +1.6 78,191 + MPMX19_05935 0.66 -0.4 78,191 + MPMX19_05935 0.66 -0.4 78,191 + MPMX19_05935 0.66 +0.1 78,191 + MPMX19_05935 0.66 -1.3 78,191 + MPMX19_05935 0.66 +0.2 78,191 + MPMX19_05935 0.66 -1.4 78,191 + MPMX19_05935 0.66 -1.0 78,192 - MPMX19_05935 0.67 +1.0 78,192 - MPMX19_05935 0.67 -0.3 78,275 + MPMX19_05935 0.74 -0.0 78,275 + MPMX19_05935 0.74 -0.8 78,276 - MPMX19_05935 0.74 +0.1 78,276 - MPMX19_05935 0.74 +0.1 78,347 + MPMX19_05935 0.80 +1.2 78,347 + MPMX19_05935 0.80 -0.6 78,347 + MPMX19_05935 0.80 -0.1 78,347 + MPMX19_05935 0.80 -0.5 78,347 + MPMX19_05935 0.80 -1.8 78,347 + MPMX19_05935 0.80 -1.2 78,347 + MPMX19_05935 0.80 +0.7 78,347 + MPMX19_05935 0.80 +0.1 78,347 + MPMX19_05935 0.80 -1.8 78,347 + MPMX19_05935 0.80 +0.3 78,347 + MPMX19_05935 0.80 +0.7 78,347 + MPMX19_05935 0.80 -1.6 78,347 + MPMX19_05935 0.80 -0.3 78,347 + MPMX19_05935 0.80 -0.6 78,347 + MPMX19_05935 0.80 -0.5 78,347 + MPMX19_05935 0.80 -0.4 78,347 + MPMX19_05935 0.80 -1.0 78,348 - MPMX19_05935 0.80 -0.8 78,348 - MPMX19_05935 0.80 -0.5 78,348 - MPMX19_05935 0.80 -0.8 78,348 - MPMX19_05935 0.80 -0.5 78,348 - MPMX19_05935 0.80 +1.1 78,348 - MPMX19_05935 0.80 -0.9 78,348 - MPMX19_05935 0.80 +0.0 78,348 - MPMX19_05935 0.80 +1.0 78,348 - MPMX19_05935 0.80 -1.4 78,348 - MPMX19_05935 0.80 -1.5 78,348 - MPMX19_05935 0.80 -1.2 78,348 - MPMX19_05935 0.80 -0.9 78,348 - MPMX19_05935 0.80 +1.3 78,348 - MPMX19_05935 0.80 -0.1 78,348 - MPMX19_05935 0.80 -1.6 78,348 - MPMX19_05935 0.80 +0.9 78,348 - MPMX19_05935 0.80 +1.7 78,348 - MPMX19_05935 0.80 -0.5 78,348 - MPMX19_05935 0.80 -0.4 78,348 - MPMX19_05935 0.80 -0.0 78,348 - MPMX19_05935 0.80 -0.6 78,348 - MPMX19_05935 0.80 -1.3 78,348 - MPMX19_05935 0.80 -0.5 78,348 - MPMX19_05935 0.80 -2.2 78,467 + -0.9 78,467 + -1.6 78,467 + -1.3 78,467 + -0.1 78,468 - -0.0 78,473 + -0.7 78,473 + -0.6 78,473 + +1.0 78,473 + -0.2 78,473 + -1.3 78,473 + -0.8 78,473 + -0.4 78,473 + -0.9 78,473 + -0.6 78,473 + -1.5 78,473 + -0.3 78,473 + -0.4 78,473 + +0.7 78,473 + +0.9 78,473 + -1.0 78,473 + -1.1 78,473 + +0.1 78,473 + -1.6 78,474 - -0.2 78,474 - -2.1 78,474 - -0.3 78,474 - +1.0 78,474 - -0.0 78,474 - -0.7 78,474 - -1.2 78,474 - +0.4 78,474 - -0.6 78,474 - -0.4 78,474 - -0.4 78,474 - +0.2 78,474 - -0.6 78,474 - -1.3 78,475 + +1.4 78,475 + +2.2 78,475 + +0.4 78,475 + +1.4 78,475 + -1.1 78,475 + +2.0 78,475 + -0.6 78,475 + -0.4 78,475 + +0.8 78,475 + -1.0 78,475 + -0.5 78,475 + -1.1 78,475 + -0.2 78,475 + +0.6 78,475 + -2.4 78,476 - +0.5 78,476 - +0.2 78,476 - -0.9 78,476 - -0.0 78,476 - -1.0 78,476 - -0.8 78,476 - -1.0 78,476 - -1.3 78,476 - -1.5 78,476 - -0.5 78,476 - +1.2 78,476 - +1.4 78,476 - +0.7 78,476 - -1.6 78,476 - -1.1 78,476 - +1.4 78,476 - +0.5 78,476 - -1.5 78,476 - +1.1 78,476 - -0.2 78,476 - -0.8 78,476 - -0.9 78,476 - +1.0 78,476 - -2.0 78,476 - -0.6 78,476 - -0.8 78,476 - +0.1 78,476 - -0.8 78,572 + -1.6 78,601 + -0.8 78,601 + -1.0 78,602 - +0.2 78,602 - -2.1 78,602 - +0.9 78,602 - -0.6 78,602 - -0.1 78,602 - -0.5 78,633 + +0.3 78,633 + -0.8 79,087 + MPMX19_05936 0.39 +1.0 79,088 - MPMX19_05936 0.39 -0.4 79,088 - MPMX19_05936 0.39 -1.1 79,088 - MPMX19_05936 0.39 -0.6 79,088 - MPMX19_05936 0.39 +0.4 79,213 + MPMX19_05936 0.49 -0.2 79,213 + MPMX19_05936 0.49 +2.1 79,213 + MPMX19_05936 0.49 -2.6 79,213 + MPMX19_05936 0.49 -0.3 79,214 - MPMX19_05936 0.49 +0.7 79,214 - MPMX19_05936 0.49 -0.1 79,214 - MPMX19_05936 0.49 -0.0 79,214 - MPMX19_05936 0.49 +1.7
Or see this region's nucleotide sequence