Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05849 and MPMX19_05850 are separated by 565 nucleotides MPMX19_05850 and MPMX19_05851 are separated by 53 nucleotides
MPMX19_05849: MPMX19_05849 - TorCAD operon transcriptional regulatory protein TorR, at 582,661 to 583,368
_05849
MPMX19_05850: MPMX19_05850 - hypothetical protein, at 583,934 to 586,147
_05850
MPMX19_05851: MPMX19_05851 - Putative amino-acid ABC transporter-binding protein YhdW, at 586,201 to 587,232
_05851
Position (kb) 583
584
585
586
587 Strain fitness (log2 ratio) -2
-1
0
1
2 at 582.955 kb on + strand, within MPMX19_05849 at 582.955 kb on + strand, within MPMX19_05849 at 582.956 kb on - strand, within MPMX19_05849 at 582.956 kb on - strand, within MPMX19_05849 at 582.956 kb on - strand, within MPMX19_05849 at 582.956 kb on - strand, within MPMX19_05849 at 582.956 kb on - strand, within MPMX19_05849 at 583.195 kb on + strand, within MPMX19_05849 at 583.196 kb on - strand, within MPMX19_05849 at 583.196 kb on - strand, within MPMX19_05849 at 583.196 kb on - strand, within MPMX19_05849 at 583.333 kb on + strand at 583.333 kb on + strand at 583.333 kb on + strand at 583.333 kb on + strand at 583.333 kb on + strand at 583.333 kb on + strand at 583.334 kb on - strand at 583.334 kb on - strand at 583.334 kb on - strand at 583.334 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.535 kb on + strand at 583.535 kb on + strand at 583.535 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.753 kb on + strand at 583.754 kb on - strand at 583.891 kb on + strand at 583.891 kb on + strand at 583.892 kb on - strand at 583.892 kb on - strand at 583.892 kb on - strand at 584.019 kb on + strand at 584.020 kb on - strand at 584.081 kb on + strand at 584.081 kb on + strand at 584.082 kb on - strand at 584.082 kb on - strand at 584.082 kb on - strand at 584.165 kb on + strand, within MPMX19_05850 at 584.165 kb on + strand, within MPMX19_05850 at 584.165 kb on + strand, within MPMX19_05850 at 584.165 kb on + strand, within MPMX19_05850 at 584.166 kb on - strand, within MPMX19_05850 at 584.166 kb on - strand, within MPMX19_05850 at 585.577 kb on + strand, within MPMX19_05850 at 586.108 kb on + strand at 586.108 kb on + strand at 586.108 kb on + strand at 586.108 kb on + strand at 586.108 kb on + strand at 586.109 kb on - strand at 586.109 kb on - strand at 586.109 kb on - strand at 586.109 kb on - strand at 586.109 kb on - strand at 586.109 kb on - strand at 586.109 kb on - strand at 586.109 kb on - strand at 586.109 kb on - strand at 586.109 kb on - strand at 586.235 kb on + strand at 586.235 kb on + strand at 586.236 kb on - strand at 586.236 kb on - strand at 586.267 kb on + strand at 586.267 kb on + strand at 586.267 kb on + strand at 586.268 kb on - strand at 586.268 kb on - strand at 586.268 kb on - strand at 586.268 kb on - strand at 586.284 kb on + strand at 586.705 kb on - strand, within MPMX19_05851 at 586.867 kb on + strand, within MPMX19_05851 at 586.867 kb on + strand, within MPMX19_05851 at 586.867 kb on + strand, within MPMX19_05851 at 586.867 kb on + strand, within MPMX19_05851 at 586.867 kb on + strand, within MPMX19_05851 at 586.868 kb on - strand, within MPMX19_05851 at 586.868 kb on - strand, within MPMX19_05851 at 586.903 kb on + strand, within MPMX19_05851 at 586.903 kb on + strand, within MPMX19_05851 at 586.904 kb on - strand, within MPMX19_05851 at 586.904 kb on - strand, within MPMX19_05851 at 586.904 kb on - strand, within MPMX19_05851 at 586.904 kb on - strand, within MPMX19_05851 at 586.904 kb on - strand, within MPMX19_05851 at 586.904 kb on - strand, within MPMX19_05851 at 586.930 kb on + strand, within MPMX19_05851 at 586.930 kb on + strand, within MPMX19_05851 at 586.930 kb on + strand, within MPMX19_05851 at 586.930 kb on + strand, within MPMX19_05851 at 586.930 kb on + strand, within MPMX19_05851 at 586.930 kb on + strand, within MPMX19_05851 at 586.930 kb on + strand, within MPMX19_05851 at 586.930 kb on + strand, within MPMX19_05851 at 586.931 kb on - strand, within MPMX19_05851 at 587.125 kb on + strand, within MPMX19_05851 at 587.125 kb on + strand, within MPMX19_05851 at 587.125 kb on + strand, within MPMX19_05851 at 587.125 kb on + strand, within MPMX19_05851 at 587.126 kb on - strand, within MPMX19_05851 at 587.126 kb on - strand, within MPMX19_05851 at 587.126 kb on - strand, within MPMX19_05851
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 582,955 + MPMX19_05849 0.42 +0.2 582,955 + MPMX19_05849 0.42 -0.7 582,956 - MPMX19_05849 0.42 -0.4 582,956 - MPMX19_05849 0.42 -0.8 582,956 - MPMX19_05849 0.42 -1.4 582,956 - MPMX19_05849 0.42 -1.1 582,956 - MPMX19_05849 0.42 -0.4 583,195 + MPMX19_05849 0.75 +0.2 583,196 - MPMX19_05849 0.76 -0.3 583,196 - MPMX19_05849 0.76 -0.3 583,196 - MPMX19_05849 0.76 +1.1 583,333 + +0.5 583,333 + -1.1 583,333 + -2.2 583,333 + -0.1 583,333 + -0.1 583,333 + -0.2 583,334 - -0.8 583,334 - -1.1 583,334 - +0.4 583,334 - -2.2 583,490 - -0.9 583,490 - -1.1 583,490 - -0.8 583,490 - -0.5 583,490 - -1.3 583,490 - +1.3 583,490 - -2.4 583,490 - +0.5 583,490 - +1.7 583,490 - -1.8 583,490 - -0.5 583,490 - -1.3 583,490 - +0.3 583,490 - -0.4 583,490 - +0.1 583,490 - +0.3 583,490 - -0.7 583,535 + +0.8 583,535 + -2.0 583,535 + +0.9 583,537 + -0.8 583,537 + -1.6 583,537 + +0.6 583,537 + -0.3 583,537 + +0.3 583,537 + -0.6 583,537 + +0.0 583,537 + +0.8 583,537 + -0.9 583,537 + -0.7 583,537 + -2.5 583,753 + +2.3 583,754 - +0.6 583,891 + -0.9 583,891 + -0.2 583,892 - -0.1 583,892 - -1.1 583,892 - -0.7 584,019 + -1.6 584,020 - -0.2 584,081 + -1.9 584,081 + -0.4 584,082 - -0.3 584,082 - -0.1 584,082 - -0.3 584,165 + MPMX19_05850 0.10 -1.3 584,165 + MPMX19_05850 0.10 -0.1 584,165 + MPMX19_05850 0.10 +0.4 584,165 + MPMX19_05850 0.10 +1.1 584,166 - MPMX19_05850 0.10 -0.1 584,166 - MPMX19_05850 0.10 -0.9 585,577 + MPMX19_05850 0.74 +1.7 586,108 + -0.3 586,108 + -0.5 586,108 + +0.4 586,108 + -0.4 586,108 + +0.8 586,109 - -0.7 586,109 - -1.1 586,109 - -0.5 586,109 - -0.2 586,109 - -2.2 586,109 - +0.1 586,109 - -0.1 586,109 - +0.3 586,109 - -1.2 586,109 - +0.3 586,235 + -1.8 586,235 + +0.7 586,236 - -0.3 586,236 - +0.2 586,267 + -0.2 586,267 + +0.5 586,267 + -1.9 586,268 - -1.8 586,268 - -1.6 586,268 - -1.1 586,268 - -0.1 586,284 + +0.8 586,705 - MPMX19_05851 0.49 -0.9 586,867 + MPMX19_05851 0.65 -1.0 586,867 + MPMX19_05851 0.65 -0.2 586,867 + MPMX19_05851 0.65 -0.7 586,867 + MPMX19_05851 0.65 +0.2 586,867 + MPMX19_05851 0.65 -0.5 586,868 - MPMX19_05851 0.65 +0.0 586,868 - MPMX19_05851 0.65 -0.3 586,903 + MPMX19_05851 0.68 +0.0 586,903 + MPMX19_05851 0.68 -1.1 586,904 - MPMX19_05851 0.68 -0.9 586,904 - MPMX19_05851 0.68 -0.1 586,904 - MPMX19_05851 0.68 +1.0 586,904 - MPMX19_05851 0.68 -0.8 586,904 - MPMX19_05851 0.68 +0.5 586,904 - MPMX19_05851 0.68 -0.7 586,930 + MPMX19_05851 0.71 +0.3 586,930 + MPMX19_05851 0.71 +0.6 586,930 + MPMX19_05851 0.71 +0.9 586,930 + MPMX19_05851 0.71 -1.8 586,930 + MPMX19_05851 0.71 -0.3 586,930 + MPMX19_05851 0.71 -0.1 586,930 + MPMX19_05851 0.71 -0.8 586,930 + MPMX19_05851 0.71 +0.2 586,931 - MPMX19_05851 0.71 +0.1 587,125 + MPMX19_05851 0.90 -1.2 587,125 + MPMX19_05851 0.90 -0.8 587,125 + MPMX19_05851 0.90 -0.2 587,125 + MPMX19_05851 0.90 -0.8 587,126 - MPMX19_05851 0.90 -1.3 587,126 - MPMX19_05851 0.90 +0.3 587,126 - MPMX19_05851 0.90 -1.0
Or see this region's nucleotide sequence