Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05813 and MPMX19_05814 are separated by 118 nucleotides MPMX19_05814 and MPMX19_05815 are separated by 17 nucleotides MPMX19_05815 and MPMX19_05816 are separated by 60 nucleotides
MPMX19_05813: MPMX19_05813 - 2-hydroxy-3-oxopropionate reductase, at 540,804 to 541,688
_05813
MPMX19_05814: MPMX19_05814 - Putative hydroxypyruvate reductase, at 541,807 to 543,096
_05814
MPMX19_05815: MPMX19_05815 - hypothetical protein, at 543,114 to 543,884
_05815
MPMX19_05816: MPMX19_05816 - Thiol-disulfide oxidoreductase ResA, at 543,945 to 544,625
_05816
Position (kb) 541
542
543
544 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 541.110 kb on + strand, within MPMX19_05813 at 541.110 kb on + strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.143 kb on + strand, within MPMX19_05813 at 541.143 kb on + strand, within MPMX19_05813 at 541.143 kb on + strand, within MPMX19_05813 at 541.144 kb on - strand, within MPMX19_05813 at 541.686 kb on + strand at 541.686 kb on + strand at 541.686 kb on + strand at 541.686 kb on + strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 542.035 kb on + strand, within MPMX19_05814 at 542.035 kb on + strand, within MPMX19_05814 at 542.473 kb on + strand, within MPMX19_05814 at 542.473 kb on + strand, within MPMX19_05814 at 542.473 kb on + strand, within MPMX19_05814 at 542.473 kb on + strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 543.001 kb on + strand at 543.001 kb on + strand at 543.002 kb on - strand at 543.002 kb on - strand at 543.002 kb on - strand at 543.160 kb on + strand at 543.160 kb on + strand at 543.160 kb on + strand at 543.160 kb on + strand at 543.160 kb on + strand at 543.160 kb on + strand at 543.160 kb on + strand at 543.160 kb on + strand at 543.160 kb on + strand at 543.160 kb on + strand at 543.161 kb on - strand at 543.161 kb on - strand at 543.161 kb on - strand at 543.161 kb on - strand at 543.161 kb on - strand at 543.161 kb on - strand at 543.161 kb on - strand at 543.161 kb on - strand at 543.161 kb on - strand at 543.161 kb on - strand at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.296 kb on - strand, within MPMX19_05815 at 543.296 kb on - strand, within MPMX19_05815 at 543.296 kb on - strand, within MPMX19_05815 at 543.296 kb on - strand, within MPMX19_05815 at 543.296 kb on - strand, within MPMX19_05815 at 543.296 kb on - strand, within MPMX19_05815 at 543.296 kb on - strand, within MPMX19_05815 at 543.296 kb on - strand, within MPMX19_05815 at 543.296 kb on - strand, within MPMX19_05815 at 543.394 kb on + strand, within MPMX19_05815 at 543.394 kb on + strand, within MPMX19_05815 at 543.394 kb on + strand, within MPMX19_05815 at 543.395 kb on - strand, within MPMX19_05815 at 543.395 kb on - strand, within MPMX19_05815 at 543.395 kb on - strand, within MPMX19_05815 at 543.395 kb on - strand, within MPMX19_05815 at 543.532 kb on + strand, within MPMX19_05815 at 543.532 kb on + strand, within MPMX19_05815 at 543.532 kb on + strand, within MPMX19_05815 at 543.533 kb on - strand, within MPMX19_05815 at 543.533 kb on - strand, within MPMX19_05815 at 543.533 kb on - strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.572 kb on - strand, within MPMX19_05815 at 543.572 kb on - strand, within MPMX19_05815 at 543.572 kb on - strand, within MPMX19_05815 at 543.572 kb on - strand, within MPMX19_05815 at 543.572 kb on - strand, within MPMX19_05815 at 543.572 kb on - strand, within MPMX19_05815 at 543.572 kb on - strand, within MPMX19_05815 at 543.572 kb on - strand, within MPMX19_05815 at 543.572 kb on - strand, within MPMX19_05815 at 543.911 kb on + strand at 543.911 kb on + strand at 543.911 kb on + strand at 543.911 kb on + strand at 543.911 kb on + strand at 543.911 kb on + strand at 543.912 kb on - strand at 543.912 kb on - strand at 543.924 kb on + strand at 543.924 kb on + strand at 543.924 kb on + strand at 543.925 kb on - strand at 543.925 kb on - strand at 543.925 kb on - strand at 543.925 kb on - strand at 543.925 kb on - strand at 543.925 kb on - strand at 543.925 kb on - strand at 543.925 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 540,882 + -1.5 540,882 + -1.9 540,882 + -1.2 540,882 + +0.7 540,882 + +1.9 540,882 + +0.2 540,882 + -0.1 540,882 + -0.9 540,882 + -0.8 540,883 - +1.4 540,883 - +0.4 540,883 - -0.7 540,883 - -1.7 540,883 - +0.7 540,883 - -1.4 540,883 - -0.7 540,883 - -0.4 540,883 - -0.2 540,883 - -1.2 540,883 - -0.5 540,883 - +0.9 540,883 - -0.6 540,883 - +0.5 540,883 - -0.3 540,883 - -0.3 540,883 - -0.8 540,883 - -2.1 540,883 - +1.0 540,883 - -0.7 540,883 - -0.9 541,110 + MPMX19_05813 0.35 -0.9 541,110 + MPMX19_05813 0.35 +1.0 541,111 - MPMX19_05813 0.35 +0.3 541,111 - MPMX19_05813 0.35 -0.3 541,111 - MPMX19_05813 0.35 -0.9 541,111 - MPMX19_05813 0.35 -0.9 541,143 + MPMX19_05813 0.38 -2.1 541,143 + MPMX19_05813 0.38 -0.1 541,143 + MPMX19_05813 0.38 +0.7 541,144 - MPMX19_05813 0.38 +0.2 541,686 + -0.2 541,686 + -0.1 541,686 + -0.1 541,686 + -0.8 541,687 - -0.7 541,687 - +0.2 541,687 - -0.8 541,687 - -0.3 541,687 - -0.8 541,773 + -1.1 541,773 + -0.2 541,773 + -0.7 541,773 + -1.4 541,773 + -0.1 541,773 + -0.1 541,773 + +0.5 541,773 + -1.0 541,773 + -0.6 541,773 + -1.9 541,773 + +0.3 541,773 + -0.3 541,774 - -0.5 541,774 - -0.9 541,774 - -1.2 541,774 - -0.8 541,774 - -0.2 541,774 - -0.0 541,774 - +0.7 541,774 - -0.9 542,035 + MPMX19_05814 0.18 +0.4 542,035 + MPMX19_05814 0.18 -0.7 542,473 + MPMX19_05814 0.52 -0.1 542,473 + MPMX19_05814 0.52 -0.7 542,473 + MPMX19_05814 0.52 -2.0 542,473 + MPMX19_05814 0.52 -0.2 542,474 - MPMX19_05814 0.52 +0.7 542,474 - MPMX19_05814 0.52 -0.3 542,474 - MPMX19_05814 0.52 -0.1 542,474 - MPMX19_05814 0.52 -0.5 542,474 - MPMX19_05814 0.52 +0.6 542,474 - MPMX19_05814 0.52 -0.1 542,474 - MPMX19_05814 0.52 +1.4 542,635 + MPMX19_05814 0.64 +0.7 542,635 + MPMX19_05814 0.64 +0.3 542,635 + MPMX19_05814 0.64 -0.0 542,635 + MPMX19_05814 0.64 -0.7 542,635 + MPMX19_05814 0.64 -0.1 542,635 + MPMX19_05814 0.64 +0.3 542,635 + MPMX19_05814 0.64 -0.3 542,635 + MPMX19_05814 0.64 -0.2 542,635 + MPMX19_05814 0.64 +0.1 542,635 + MPMX19_05814 0.64 +0.1 542,636 - MPMX19_05814 0.64 +0.7 542,636 - MPMX19_05814 0.64 -0.1 542,636 - MPMX19_05814 0.64 -0.2 542,636 - MPMX19_05814 0.64 +1.1 542,636 - MPMX19_05814 0.64 -1.6 542,636 - MPMX19_05814 0.64 -0.1 542,636 - MPMX19_05814 0.64 -0.2 542,636 - MPMX19_05814 0.64 +0.3 542,636 - MPMX19_05814 0.64 -0.7 542,636 - MPMX19_05814 0.64 -1.9 543,001 + +0.2 543,001 + -0.6 543,002 - -0.1 543,002 - -0.7 543,002 - +0.7 543,160 + -0.9 543,160 + +0.0 543,160 + +0.5 543,160 + -0.8 543,160 + +0.7 543,160 + -0.2 543,160 + -0.2 543,160 + -0.7 543,160 + +1.4 543,160 + +0.7 543,161 - +0.5 543,161 - -0.4 543,161 - -0.6 543,161 - +0.4 543,161 - +0.3 543,161 - -2.0 543,161 - -0.1 543,161 - +0.3 543,161 - +0.1 543,161 - -0.3 543,295 + MPMX19_05815 0.23 -1.2 543,295 + MPMX19_05815 0.23 -0.0 543,295 + MPMX19_05815 0.23 +0.1 543,295 + MPMX19_05815 0.23 -0.7 543,295 + MPMX19_05815 0.23 +0.0 543,295 + MPMX19_05815 0.23 -0.1 543,295 + MPMX19_05815 0.23 +0.4 543,295 + MPMX19_05815 0.23 +0.3 543,295 + MPMX19_05815 0.23 -0.8 543,295 + MPMX19_05815 0.23 -0.7 543,295 + MPMX19_05815 0.23 -1.9 543,295 + MPMX19_05815 0.23 -0.6 543,295 + MPMX19_05815 0.23 +0.7 543,295 + MPMX19_05815 0.23 -3.1 543,295 + MPMX19_05815 0.23 -1.0 543,296 - MPMX19_05815 0.24 -0.5 543,296 - MPMX19_05815 0.24 +0.1 543,296 - MPMX19_05815 0.24 -0.7 543,296 - MPMX19_05815 0.24 -0.8 543,296 - MPMX19_05815 0.24 +0.2 543,296 - MPMX19_05815 0.24 -0.7 543,296 - MPMX19_05815 0.24 -1.5 543,296 - MPMX19_05815 0.24 -0.3 543,296 - MPMX19_05815 0.24 +0.7 543,394 + MPMX19_05815 0.36 +0.1 543,394 + MPMX19_05815 0.36 -1.2 543,394 + MPMX19_05815 0.36 -1.1 543,395 - MPMX19_05815 0.36 -0.1 543,395 - MPMX19_05815 0.36 -0.9 543,395 - MPMX19_05815 0.36 +0.6 543,395 - MPMX19_05815 0.36 -1.5 543,532 + MPMX19_05815 0.54 +0.3 543,532 + MPMX19_05815 0.54 -0.2 543,532 + MPMX19_05815 0.54 +1.2 543,533 - MPMX19_05815 0.54 -0.2 543,533 - MPMX19_05815 0.54 -0.9 543,533 - MPMX19_05815 0.54 +0.2 543,571 + MPMX19_05815 0.59 +0.4 543,571 + MPMX19_05815 0.59 +1.2 543,571 + MPMX19_05815 0.59 -2.2 543,571 + MPMX19_05815 0.59 +0.1 543,571 + MPMX19_05815 0.59 +0.5 543,571 + MPMX19_05815 0.59 -0.7 543,571 + MPMX19_05815 0.59 -0.7 543,571 + MPMX19_05815 0.59 -0.4 543,571 + MPMX19_05815 0.59 +0.4 543,571 + MPMX19_05815 0.59 -0.4 543,571 + MPMX19_05815 0.59 -1.3 543,571 + MPMX19_05815 0.59 -0.5 543,571 + MPMX19_05815 0.59 +0.8 543,572 - MPMX19_05815 0.59 -1.3 543,572 - MPMX19_05815 0.59 +0.1 543,572 - MPMX19_05815 0.59 -1.8 543,572 - MPMX19_05815 0.59 -0.3 543,572 - MPMX19_05815 0.59 +0.7 543,572 - MPMX19_05815 0.59 -1.4 543,572 - MPMX19_05815 0.59 -1.5 543,572 - MPMX19_05815 0.59 -0.8 543,572 - MPMX19_05815 0.59 +1.2 543,911 + +0.3 543,911 + -0.2 543,911 + +0.3 543,911 + -0.0 543,911 + -0.3 543,911 + -1.5 543,912 - -0.1 543,912 - +0.7 543,924 + +0.1 543,924 + +0.4 543,924 + -0.3 543,925 - -2.2 543,925 - -0.9 543,925 - -0.5 543,925 - -1.1 543,925 - +0.1 543,925 - -0.8 543,925 - -0.7 543,925 - -1.7
Or see this region's nucleotide sequence