Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05785 and MPMX19_05786 are separated by 154 nucleotides MPMX19_05786 and MPMX19_05787 are separated by 15 nucleotides MPMX19_05787 and MPMX19_05788 are separated by 236 nucleotides
MPMX19_05785: MPMX19_05785 - hypothetical protein, at 508,338 to 509,354
_05785
MPMX19_05786: MPMX19_05786 - HTH-type transcriptional repressor RspR, at 509,509 to 510,267
_05786
MPMX19_05787: MPMX19_05787 - Methylglyoxal synthase, at 510,283 to 510,750
_05787
MPMX19_05788: MPMX19_05788 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase, at 510,987 to 511,823
_05788
Position (kb) 510
511 Strain fitness (log2 ratio) -2
-1
0
1
2 at 509.316 kb on + strand at 509.316 kb on + strand at 509.317 kb on - strand at 509.317 kb on - strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.353 kb on - strand at 509.353 kb on - strand at 509.353 kb on - strand at 509.353 kb on - strand at 509.353 kb on - strand at 509.353 kb on - strand at 509.452 kb on + strand at 509.452 kb on + strand at 509.453 kb on - strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.455 kb on - strand at 509.455 kb on - strand at 509.455 kb on - strand at 509.455 kb on - strand at 509.457 kb on + strand at 509.457 kb on + strand at 509.457 kb on + strand at 509.457 kb on + strand at 509.458 kb on - strand at 509.458 kb on - strand at 509.458 kb on - strand at 509.458 kb on - strand at 509.458 kb on - strand at 509.460 kb on + strand at 509.461 kb on - strand at 509.461 kb on - strand at 509.477 kb on + strand at 509.508 kb on + strand at 509.508 kb on + strand at 509.508 kb on + strand at 509.508 kb on + strand at 509.508 kb on + strand at 509.509 kb on - strand at 509.509 kb on - strand at 509.509 kb on - strand at 509.509 kb on - strand at 509.509 kb on - strand at 509.529 kb on + strand at 509.635 kb on + strand, within MPMX19_05786 at 509.635 kb on + strand, within MPMX19_05786 at 509.635 kb on + strand, within MPMX19_05786 at 509.635 kb on + strand, within MPMX19_05786 at 509.635 kb on + strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.881 kb on + strand, within MPMX19_05786 at 510.244 kb on + strand at 510.245 kb on - strand at 510.245 kb on - strand at 510.253 kb on + strand at 510.254 kb on - strand at 510.254 kb on - strand at 510.254 kb on - strand at 510.254 kb on - strand at 510.302 kb on + strand at 510.303 kb on - strand at 510.303 kb on - strand at 510.332 kb on + strand, within MPMX19_05787 at 510.333 kb on - strand, within MPMX19_05787 at 510.404 kb on + strand, within MPMX19_05787 at 510.404 kb on + strand, within MPMX19_05787 at 510.404 kb on + strand, within MPMX19_05787 at 510.404 kb on + strand, within MPMX19_05787 at 510.404 kb on + strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.782 kb on - strand at 510.782 kb on - strand at 510.785 kb on - strand at 510.787 kb on - strand at 510.787 kb on - strand at 510.898 kb on + strand at 510.898 kb on + strand at 510.898 kb on + strand at 510.899 kb on - strand at 510.899 kb on - strand at 510.899 kb on - strand at 510.899 kb on - strand at 510.899 kb on - strand at 510.899 kb on - strand at 510.971 kb on + strand at 510.971 kb on + strand at 510.971 kb on + strand at 510.972 kb on - strand at 510.972 kb on - strand at 510.972 kb on - strand at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.272 kb on + strand, within MPMX19_05788 at 511.272 kb on + strand, within MPMX19_05788 at 511.272 kb on + strand, within MPMX19_05788 at 511.272 kb on + strand, within MPMX19_05788 at 511.272 kb on + strand, within MPMX19_05788 at 511.272 kb on + strand, within MPMX19_05788 at 511.272 kb on + strand, within MPMX19_05788 at 511.273 kb on - strand, within MPMX19_05788 at 511.273 kb on - strand, within MPMX19_05788 at 511.273 kb on - strand, within MPMX19_05788 at 511.273 kb on - strand, within MPMX19_05788 at 511.273 kb on - strand, within MPMX19_05788 at 511.299 kb on + strand, within MPMX19_05788 at 511.299 kb on + strand, within MPMX19_05788 at 511.299 kb on + strand, within MPMX19_05788 at 511.299 kb on + strand, within MPMX19_05788 at 511.299 kb on + strand, within MPMX19_05788 at 511.299 kb on + strand, within MPMX19_05788 at 511.299 kb on + strand, within MPMX19_05788 at 511.299 kb on + strand, within MPMX19_05788 at 511.300 kb on - strand, within MPMX19_05788 at 511.300 kb on - strand, within MPMX19_05788 at 511.300 kb on - strand, within MPMX19_05788 at 511.300 kb on - strand, within MPMX19_05788 at 511.300 kb on - strand, within MPMX19_05788 at 511.300 kb on - strand, within MPMX19_05788 at 511.300 kb on - strand, within MPMX19_05788 at 511.365 kb on + strand, within MPMX19_05788 at 511.365 kb on + strand, within MPMX19_05788 at 511.365 kb on + strand, within MPMX19_05788 at 511.365 kb on + strand, within MPMX19_05788 at 511.365 kb on + strand, within MPMX19_05788 at 511.365 kb on + strand, within MPMX19_05788 at 511.476 kb on + strand, within MPMX19_05788 at 511.476 kb on + strand, within MPMX19_05788 at 511.476 kb on + strand, within MPMX19_05788 at 511.476 kb on + strand, within MPMX19_05788 at 511.476 kb on + strand, within MPMX19_05788 at 511.476 kb on + strand, within MPMX19_05788 at 511.476 kb on + strand, within MPMX19_05788 at 511.477 kb on - strand, within MPMX19_05788 at 511.477 kb on - strand, within MPMX19_05788 at 511.477 kb on - strand, within MPMX19_05788 at 511.477 kb on - strand, within MPMX19_05788 at 511.477 kb on - strand, within MPMX19_05788 at 511.477 kb on - strand, within MPMX19_05788 at 511.477 kb on - strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.600 kb on - strand, within MPMX19_05788 at 511.600 kb on - strand, within MPMX19_05788 at 511.600 kb on - strand, within MPMX19_05788 at 511.600 kb on - strand, within MPMX19_05788 at 511.600 kb on - strand, within MPMX19_05788 at 511.600 kb on - strand, within MPMX19_05788 at 511.600 kb on - strand, within MPMX19_05788 at 511.600 kb on - strand, within MPMX19_05788 at 511.600 kb on - strand, within MPMX19_05788 at 511.605 kb on + strand, within MPMX19_05788 at 511.606 kb on - strand, within MPMX19_05788 at 511.606 kb on - strand, within MPMX19_05788 at 511.606 kb on - strand, within MPMX19_05788 at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 509,316 + -0.0 509,316 + -1.0 509,317 - -1.3 509,317 - +1.2 509,352 + -1.4 509,352 + +0.9 509,352 + -0.7 509,352 + -0.2 509,352 + -0.0 509,352 + +0.4 509,352 + +0.3 509,353 - -1.1 509,353 - +0.0 509,353 - +1.1 509,353 - +0.1 509,353 - -0.8 509,353 - +0.8 509,452 + -1.5 509,452 + +0.5 509,453 - +0.3 509,454 + -2.2 509,454 + -0.9 509,454 + -0.5 509,454 + +0.7 509,454 + +0.4 509,454 + -0.4 509,454 + -0.0 509,454 + -0.3 509,454 + +0.3 509,455 - -0.4 509,455 - -1.3 509,455 - -0.2 509,455 - +0.5 509,457 + -0.6 509,457 + -0.4 509,457 + +1.1 509,457 + -0.9 509,458 - -2.3 509,458 - -1.1 509,458 - -0.1 509,458 - +0.7 509,458 - -0.7 509,460 + -1.0 509,461 - -1.4 509,461 - -0.6 509,477 + -0.8 509,508 + -0.3 509,508 + -0.9 509,508 + -0.7 509,508 + -0.2 509,508 + +0.4 509,509 - +2.1 509,509 - +0.3 509,509 - -0.6 509,509 - -1.9 509,509 - -2.0 509,529 + -1.8 509,635 + MPMX19_05786 0.17 +1.0 509,635 + MPMX19_05786 0.17 -0.7 509,635 + MPMX19_05786 0.17 +0.8 509,635 + MPMX19_05786 0.17 -0.7 509,635 + MPMX19_05786 0.17 -1.8 509,636 - MPMX19_05786 0.17 +0.4 509,636 - MPMX19_05786 0.17 +0.7 509,636 - MPMX19_05786 0.17 +1.2 509,636 - MPMX19_05786 0.17 -1.7 509,636 - MPMX19_05786 0.17 +1.4 509,636 - MPMX19_05786 0.17 -1.3 509,717 - MPMX19_05786 0.27 -1.7 509,717 - MPMX19_05786 0.27 -1.5 509,717 - MPMX19_05786 0.27 -0.1 509,717 - MPMX19_05786 0.27 -0.9 509,717 - MPMX19_05786 0.27 +1.0 509,717 - MPMX19_05786 0.27 -0.6 509,717 - MPMX19_05786 0.27 +0.8 509,881 + MPMX19_05786 0.49 +0.4 510,244 + -1.8 510,245 - +0.9 510,245 - -1.7 510,253 + -1.4 510,254 - -1.3 510,254 - +1.3 510,254 - -1.3 510,254 - -1.3 510,302 + +0.6 510,303 - -1.1 510,303 - -0.9 510,332 + MPMX19_05787 0.10 -0.7 510,333 - MPMX19_05787 0.11 -0.8 510,404 + MPMX19_05787 0.26 -1.2 510,404 + MPMX19_05787 0.26 -0.1 510,404 + MPMX19_05787 0.26 -0.3 510,404 + MPMX19_05787 0.26 -0.4 510,404 + MPMX19_05787 0.26 -0.1 510,405 - MPMX19_05787 0.26 -0.5 510,405 - MPMX19_05787 0.26 -0.9 510,405 - MPMX19_05787 0.26 -1.2 510,405 - MPMX19_05787 0.26 -0.8 510,405 - MPMX19_05787 0.26 -1.2 510,405 - MPMX19_05787 0.26 -1.1 510,405 - MPMX19_05787 0.26 -0.3 510,405 - MPMX19_05787 0.26 -0.5 510,405 - MPMX19_05787 0.26 -0.3 510,405 - MPMX19_05787 0.26 -1.0 510,405 - MPMX19_05787 0.26 +0.4 510,782 - -0.7 510,782 - +0.4 510,785 - -0.3 510,787 - -0.2 510,787 - +0.7 510,898 + +1.3 510,898 + -1.3 510,898 + -0.3 510,899 - +1.2 510,899 - -2.6 510,899 - +1.0 510,899 - -1.7 510,899 - +0.0 510,899 - +0.0 510,971 + -0.8 510,971 + +0.3 510,971 + -1.6 510,972 - +0.2 510,972 - -1.2 510,972 - -0.9 511,107 + MPMX19_05788 0.14 +0.3 511,107 + MPMX19_05788 0.14 -1.6 511,107 + MPMX19_05788 0.14 -2.4 511,107 + MPMX19_05788 0.14 -0.2 511,107 + MPMX19_05788 0.14 +0.1 511,107 + MPMX19_05788 0.14 +0.7 511,107 + MPMX19_05788 0.14 +0.0 511,107 + MPMX19_05788 0.14 -0.7 511,107 + MPMX19_05788 0.14 +0.9 511,107 + MPMX19_05788 0.14 +1.0 511,107 + MPMX19_05788 0.14 +0.7 511,107 + MPMX19_05788 0.14 +0.1 511,108 - MPMX19_05788 0.14 +0.6 511,108 - MPMX19_05788 0.14 -0.0 511,108 - MPMX19_05788 0.14 -0.9 511,108 - MPMX19_05788 0.14 -0.7 511,108 - MPMX19_05788 0.14 -1.4 511,108 - MPMX19_05788 0.14 +1.3 511,108 - MPMX19_05788 0.14 -2.1 511,108 - MPMX19_05788 0.14 -0.8 511,108 - MPMX19_05788 0.14 -1.4 511,108 - MPMX19_05788 0.14 -0.1 511,108 - MPMX19_05788 0.14 -0.4 511,272 + MPMX19_05788 0.34 -1.7 511,272 + MPMX19_05788 0.34 -1.2 511,272 + MPMX19_05788 0.34 -2.0 511,272 + MPMX19_05788 0.34 -0.1 511,272 + MPMX19_05788 0.34 -0.7 511,272 + MPMX19_05788 0.34 +0.7 511,272 + MPMX19_05788 0.34 -0.4 511,273 - MPMX19_05788 0.34 +0.1 511,273 - MPMX19_05788 0.34 -0.3 511,273 - MPMX19_05788 0.34 -1.2 511,273 - MPMX19_05788 0.34 -2.0 511,273 - MPMX19_05788 0.34 -0.5 511,299 + MPMX19_05788 0.37 -2.2 511,299 + MPMX19_05788 0.37 -0.4 511,299 + MPMX19_05788 0.37 -2.5 511,299 + MPMX19_05788 0.37 -1.0 511,299 + MPMX19_05788 0.37 +0.7 511,299 + MPMX19_05788 0.37 -2.7 511,299 + MPMX19_05788 0.37 +0.9 511,299 + MPMX19_05788 0.37 -0.3 511,300 - MPMX19_05788 0.37 +0.5 511,300 - MPMX19_05788 0.37 -1.7 511,300 - MPMX19_05788 0.37 +0.3 511,300 - MPMX19_05788 0.37 -1.1 511,300 - MPMX19_05788 0.37 -0.9 511,300 - MPMX19_05788 0.37 +0.4 511,300 - MPMX19_05788 0.37 +0.1 511,365 + MPMX19_05788 0.45 -0.2 511,365 + MPMX19_05788 0.45 -1.1 511,365 + MPMX19_05788 0.45 +0.3 511,365 + MPMX19_05788 0.45 +1.0 511,365 + MPMX19_05788 0.45 -0.6 511,365 + MPMX19_05788 0.45 +0.2 511,476 + MPMX19_05788 0.58 -0.8 511,476 + MPMX19_05788 0.58 -0.6 511,476 + MPMX19_05788 0.58 +0.7 511,476 + MPMX19_05788 0.58 +0.4 511,476 + MPMX19_05788 0.58 +0.4 511,476 + MPMX19_05788 0.58 -1.2 511,476 + MPMX19_05788 0.58 -1.3 511,477 - MPMX19_05788 0.59 -1.8 511,477 - MPMX19_05788 0.59 -1.9 511,477 - MPMX19_05788 0.59 -1.7 511,477 - MPMX19_05788 0.59 +0.3 511,477 - MPMX19_05788 0.59 -0.9 511,477 - MPMX19_05788 0.59 -0.7 511,477 - MPMX19_05788 0.59 -0.3 511,599 + MPMX19_05788 0.73 -1.1 511,599 + MPMX19_05788 0.73 -0.7 511,599 + MPMX19_05788 0.73 -1.3 511,599 + MPMX19_05788 0.73 +1.1 511,599 + MPMX19_05788 0.73 -1.1 511,599 + MPMX19_05788 0.73 -0.7 511,599 + MPMX19_05788 0.73 +0.3 511,599 + MPMX19_05788 0.73 -2.3 511,599 + MPMX19_05788 0.73 +1.3 511,599 + MPMX19_05788 0.73 -1.5 511,599 + MPMX19_05788 0.73 -1.0 511,599 + MPMX19_05788 0.73 -0.1 511,599 + MPMX19_05788 0.73 +0.3 511,600 - MPMX19_05788 0.73 +0.7 511,600 - MPMX19_05788 0.73 -0.7 511,600 - MPMX19_05788 0.73 -0.4 511,600 - MPMX19_05788 0.73 -0.7 511,600 - MPMX19_05788 0.73 -1.0 511,600 - MPMX19_05788 0.73 -0.9 511,600 - MPMX19_05788 0.73 -0.5 511,600 - MPMX19_05788 0.73 +1.0 511,600 - MPMX19_05788 0.73 -0.3 511,605 + MPMX19_05788 0.74 -0.2 511,606 - MPMX19_05788 0.74 -0.4 511,606 - MPMX19_05788 0.74 -0.1 511,606 - MPMX19_05788 0.74 +0.3 511,743 + -1.3 511,743 + -0.5 511,743 + +0.8 511,743 + -0.4 511,743 + -0.7 511,743 + +0.7 511,743 + -0.9 511,743 + -0.9 511,743 + -0.1 511,743 + +0.2 511,744 - -1.4 511,744 - -1.5 511,744 - -0.1 511,744 - -1.3 511,744 - +0.3 511,744 - +0.1 511,744 - -1.8 511,744 - -0.9 511,744 - -0.5 511,744 - +0.8 511,744 - -0.5 511,744 - -0.9 511,744 - -0.7 511,744 - +1.0 511,744 - -0.7 511,744 - +0.4 511,744 - -0.4 511,744 - -0.7 511,744 - +0.7
Or see this region's nucleotide sequence