Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05722

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05721 and MPMX19_05722 are separated by 16 nucleotidesMPMX19_05722 and MPMX19_05723 are separated by 46 nucleotides MPMX19_05721: MPMX19_05721 - Hydrogenase maturation factor HypB, at 439,967 to 441,019 _05721 MPMX19_05722: MPMX19_05722 - hypothetical protein, at 441,036 to 441,266 _05722 MPMX19_05723: MPMX19_05723 - Carbamoyl dehydratase HypE, at 441,313 to 442,359 _05723 Position (kb) 441 442Strain fitness (log2 ratio) -2 -1 0 1 2at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.786 kb on + strand, within MPMX19_05721at 440.880 kb on - strand, within MPMX19_05721at 440.954 kb on + strandat 440.954 kb on + strandat 440.954 kb on + strandat 440.954 kb on + strandat 440.954 kb on + strandat 440.955 kb on - strandat 440.955 kb on - strandat 440.955 kb on - strandat 440.955 kb on - strandat 440.955 kb on - strandat 440.955 kb on - strandat 440.955 kb on - strandat 440.998 kb on + strandat 440.998 kb on + strandat 440.998 kb on + strandat 440.998 kb on + strandat 440.998 kb on + strandat 440.998 kb on + strandat 440.998 kb on + strandat 440.998 kb on + strandat 440.998 kb on + strandat 440.999 kb on - strandat 440.999 kb on - strandat 440.999 kb on - strandat 440.999 kb on - strandat 440.999 kb on - strandat 440.999 kb on - strandat 440.999 kb on - strandat 440.999 kb on - strandat 440.999 kb on - strandat 440.999 kb on - strandat 441.159 kb on + strand, within MPMX19_05722at 441.159 kb on + strand, within MPMX19_05722at 441.159 kb on + strand, within MPMX19_05722at 441.159 kb on + strand, within MPMX19_05722at 441.159 kb on + strand, within MPMX19_05722at 441.159 kb on + strand, within MPMX19_05722at 441.159 kb on + strand, within MPMX19_05722at 441.160 kb on - strand, within MPMX19_05722at 441.160 kb on - strand, within MPMX19_05722at 441.160 kb on - strand, within MPMX19_05722at 441.160 kb on - strand, within MPMX19_05722at 441.160 kb on - strand, within MPMX19_05722at 441.160 kb on - strand, within MPMX19_05722at 441.160 kb on - strand, within MPMX19_05722at 441.181 kb on - strand, within MPMX19_05722at 441.181 kb on - strand, within MPMX19_05722at 441.765 kb on + strand, within MPMX19_05723at 441.765 kb on + strand, within MPMX19_05723at 441.765 kb on + strand, within MPMX19_05723at 441.766 kb on - strand, within MPMX19_05723at 441.766 kb on - strand, within MPMX19_05723at 441.766 kb on - strand, within MPMX19_05723at 441.766 kb on - strand, within MPMX19_05723at 441.766 kb on - strand, within MPMX19_05723at 441.797 kb on + strand, within MPMX19_05723at 441.798 kb on - strand, within MPMX19_05723at 442.144 kb on + strand, within MPMX19_05723at 442.144 kb on + strand, within MPMX19_05723at 442.145 kb on - strand, within MPMX19_05723at 442.145 kb on - strand, within MPMX19_05723at 442.145 kb on - strand, within MPMX19_05723at 442.145 kb on - strand, within MPMX19_05723at 442.145 kb on - strand, within MPMX19_05723at 442.162 kb on - strand, within MPMX19_05723at 442.162 kb on - strand, within MPMX19_05723

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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440,215 + MPMX19_05721 0.24 +0.7
440,215 + MPMX19_05721 0.24 +0.4
440,215 + MPMX19_05721 0.24 +0.5
440,215 + MPMX19_05721 0.24 +1.0
440,215 + MPMX19_05721 0.24 -2.7
440,215 + MPMX19_05721 0.24 -0.9
440,215 + MPMX19_05721 0.24 -1.1
440,215 + MPMX19_05721 0.24 -0.9
440,215 + MPMX19_05721 0.24 -1.7
440,215 + MPMX19_05721 0.24 +1.1
440,215 + MPMX19_05721 0.24 -0.3
440,215 + MPMX19_05721 0.24 +0.5
440,215 + MPMX19_05721 0.24 -0.8
440,215 + MPMX19_05721 0.24 -0.1
440,215 + MPMX19_05721 0.24 -0.9
440,216 - MPMX19_05721 0.24 +0.1
440,216 - MPMX19_05721 0.24 +0.3
440,216 - MPMX19_05721 0.24 -1.1
440,216 - MPMX19_05721 0.24 -0.2
440,216 - MPMX19_05721 0.24 -1.3
440,216 - MPMX19_05721 0.24 -0.5
440,216 - MPMX19_05721 0.24 -0.3
440,216 - MPMX19_05721 0.24 -0.2
440,216 - MPMX19_05721 0.24 +0.3
440,216 - MPMX19_05721 0.24 -0.9
440,216 - MPMX19_05721 0.24 -0.1
440,216 - MPMX19_05721 0.24 +1.1
440,216 - MPMX19_05721 0.24 -1.5
440,216 - MPMX19_05721 0.24 +0.3
440,216 - MPMX19_05721 0.24 -1.5
440,216 - MPMX19_05721 0.24 -0.7
440,786 + MPMX19_05721 0.78 +0.1
440,880 - MPMX19_05721 0.87 -0.3
440,954 + -0.5
440,954 + -0.1
440,954 + -0.3
440,954 + +0.4
440,954 + +0.3
440,955 - +1.1
440,955 - -1.3
440,955 - +0.3
440,955 - +0.3
440,955 - -1.1
440,955 - +0.2
440,955 - -1.3
440,998 + -0.5
440,998 + +0.4
440,998 + -0.9
440,998 + +0.9
440,998 + +0.2
440,998 + -0.8
440,998 + -0.5
440,998 + -0.7
440,998 + -0.7
440,999 - -1.7
440,999 - +1.7
440,999 - -1.9
440,999 - -0.5
440,999 - -0.3
440,999 - -0.9
440,999 - +2.7
440,999 - -0.1
440,999 - +0.1
440,999 - -0.3
441,159 + MPMX19_05722 0.53 +0.3
441,159 + MPMX19_05722 0.53 -0.8
441,159 + MPMX19_05722 0.53 -0.5
441,159 + MPMX19_05722 0.53 -1.1
441,159 + MPMX19_05722 0.53 +0.9
441,159 + MPMX19_05722 0.53 -0.9
441,159 + MPMX19_05722 0.53 -0.8
441,160 - MPMX19_05722 0.54 +0.5
441,160 - MPMX19_05722 0.54 +0.1
441,160 - MPMX19_05722 0.54 -0.1
441,160 - MPMX19_05722 0.54 -1.8
441,160 - MPMX19_05722 0.54 -0.5
441,160 - MPMX19_05722 0.54 -0.3
441,160 - MPMX19_05722 0.54 -1.8
441,181 - MPMX19_05722 0.63 -1.0
441,181 - MPMX19_05722 0.63 -1.3
441,765 + MPMX19_05723 0.43 -1.9
441,765 + MPMX19_05723 0.43 -0.9
441,765 + MPMX19_05723 0.43 +0.9
441,766 - MPMX19_05723 0.43 -0.2
441,766 - MPMX19_05723 0.43 -0.1
441,766 - MPMX19_05723 0.43 +0.4
441,766 - MPMX19_05723 0.43 -1.7
441,766 - MPMX19_05723 0.43 -1.0
441,797 + MPMX19_05723 0.46 -1.3
441,798 - MPMX19_05723 0.46 -0.5
442,144 + MPMX19_05723 0.79 -0.2
442,144 + MPMX19_05723 0.79 -0.7
442,145 - MPMX19_05723 0.79 -0.0
442,145 - MPMX19_05723 0.79 +1.0
442,145 - MPMX19_05723 0.79 -0.2
442,145 - MPMX19_05723 0.79 -0.4
442,145 - MPMX19_05723 0.79 +0.1
442,162 - MPMX19_05723 0.81 -1.5
442,162 - MPMX19_05723 0.81 -2.1

Or see this region's nucleotide sequence