Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05675 and MPMX19_05676 are separated by 146 nucleotides MPMX19_05676 and MPMX19_05677 are separated by 130 nucleotides MPMX19_05677 and MPMX19_05678 are separated by 59 nucleotides MPMX19_05678 and MPMX19_05679 overlap by 4 nucleotides
MPMX19_05675: MPMX19_05675 - HTH-type transcriptional regulator YjiE, at 394,227 to 395,219
_05675
MPMX19_05676: MPMX19_05676 - hypothetical protein, at 395,366 to 395,596
_05676
MPMX19_05677: MPMX19_05677 - hypothetical protein, at 395,727 to 396,317
_05677
MPMX19_05678: MPMX19_05678 - hypothetical protein, at 396,377 to 396,811
_05678
MPMX19_05679: MPMX19_05679 - Flagellum-specific ATP synthase, at 396,808 to 398,145
_05679
Position (kb)
395
396
397 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 394.824 kb on + strand, within MPMX19_05675 at 394.824 kb on + strand, within MPMX19_05675 at 394.824 kb on + strand, within MPMX19_05675 at 394.825 kb on - strand, within MPMX19_05675 at 394.825 kb on - strand, within MPMX19_05675 at 394.825 kb on - strand, within MPMX19_05675 at 394.825 kb on - strand, within MPMX19_05675 at 394.825 kb on - strand, within MPMX19_05675 at 394.825 kb on - strand, within MPMX19_05675 at 394.825 kb on - strand, within MPMX19_05675 at 394.825 kb on - strand, within MPMX19_05675 at 395.322 kb on + strand at 395.322 kb on + strand at 395.322 kb on + strand at 395.322 kb on + strand at 395.322 kb on + strand at 395.323 kb on - strand at 395.399 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.601 kb on + strand at 395.630 kb on + strand at 395.630 kb on + strand at 395.631 kb on - strand at 395.631 kb on - strand at 395.896 kb on - strand, within MPMX19_05677 at 395.896 kb on - strand, within MPMX19_05677 at 395.896 kb on - strand, within MPMX19_05677 at 395.925 kb on + strand, within MPMX19_05677 at 395.925 kb on + strand, within MPMX19_05677 at 395.925 kb on + strand, within MPMX19_05677 at 395.926 kb on - strand, within MPMX19_05677 at 395.926 kb on - strand, within MPMX19_05677 at 395.926 kb on - strand, within MPMX19_05677 at 395.926 kb on - strand, within MPMX19_05677 at 395.991 kb on + strand, within MPMX19_05677 at 396.102 kb on + strand, within MPMX19_05677 at 396.103 kb on - strand, within MPMX19_05677 at 396.103 kb on - strand, within MPMX19_05677 at 396.265 kb on + strand at 396.265 kb on + strand at 396.266 kb on - strand at 396.266 kb on - strand at 396.266 kb on - strand at 396.266 kb on - strand at 396.273 kb on + strand at 396.273 kb on + strand at 396.273 kb on + strand at 396.273 kb on + strand at 396.273 kb on + strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.371 kb on + strand at 396.372 kb on - strand at 396.372 kb on - strand at 396.372 kb on - strand at 396.372 kb on - strand at 396.372 kb on - strand at 396.510 kb on + strand, within MPMX19_05678 at 396.510 kb on + strand, within MPMX19_05678 at 396.511 kb on - strand, within MPMX19_05678 at 396.636 kb on + strand, within MPMX19_05678 at 396.636 kb on + strand, within MPMX19_05678 at 396.636 kb on + strand, within MPMX19_05678 at 396.636 kb on + strand, within MPMX19_05678 at 396.636 kb on + strand, within MPMX19_05678 at 396.636 kb on + strand, within MPMX19_05678 at 396.636 kb on + strand, within MPMX19_05678 at 396.637 kb on - strand, within MPMX19_05678 at 396.637 kb on - strand, within MPMX19_05678 at 396.637 kb on - strand, within MPMX19_05678 at 396.637 kb on - strand, within MPMX19_05678 at 396.637 kb on - strand, within MPMX19_05678 at 396.637 kb on - strand, within MPMX19_05678 at 396.637 kb on - strand, within MPMX19_05678 at 396.736 kb on + strand, within MPMX19_05678 at 396.736 kb on + strand, within MPMX19_05678 at 396.736 kb on + strand, within MPMX19_05678 at 396.736 kb on + strand, within MPMX19_05678 at 396.736 kb on + strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.959 kb on + strand, within MPMX19_05679 at 396.960 kb on - strand, within MPMX19_05679 at 396.960 kb on - strand, within MPMX19_05679 at 396.995 kb on + strand, within MPMX19_05679 at 396.995 kb on + strand, within MPMX19_05679 at 396.995 kb on + strand, within MPMX19_05679 at 396.995 kb on + strand, within MPMX19_05679 at 396.996 kb on - strand, within MPMX19_05679 at 396.996 kb on - strand, within MPMX19_05679 at 396.996 kb on - strand, within MPMX19_05679 at 396.996 kb on - strand, within MPMX19_05679 at 396.996 kb on - strand, within MPMX19_05679 at 396.996 kb on - strand, within MPMX19_05679 at 397.298 kb on + strand, within MPMX19_05679 at 397.298 kb on + strand, within MPMX19_05679
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 394,824 + MPMX19_05675 0.60 -0.8 394,824 + MPMX19_05675 0.60 -0.7 394,824 + MPMX19_05675 0.60 -0.7 394,825 - MPMX19_05675 0.60 +0.1 394,825 - MPMX19_05675 0.60 -0.5 394,825 - MPMX19_05675 0.60 -0.3 394,825 - MPMX19_05675 0.60 -0.1 394,825 - MPMX19_05675 0.60 -0.8 394,825 - MPMX19_05675 0.60 +0.7 394,825 - MPMX19_05675 0.60 +0.4 394,825 - MPMX19_05675 0.60 -0.2 395,322 + -0.6 395,322 + -1.1 395,322 + -1.7 395,322 + -0.3 395,322 + -2.4 395,323 - +0.1 395,399 + MPMX19_05676 0.14 +0.4 395,414 + MPMX19_05676 0.21 -0.6 395,414 + MPMX19_05676 0.21 -0.9 395,414 + MPMX19_05676 0.21 -0.7 395,414 + MPMX19_05676 0.21 -0.8 395,414 + MPMX19_05676 0.21 +0.3 395,414 + MPMX19_05676 0.21 -1.1 395,414 + MPMX19_05676 0.21 -1.0 395,414 + MPMX19_05676 0.21 +0.7 395,414 + MPMX19_05676 0.21 -0.5 395,414 + MPMX19_05676 0.21 -1.3 395,414 + MPMX19_05676 0.21 -0.9 395,414 + MPMX19_05676 0.21 -1.4 395,414 + MPMX19_05676 0.21 +0.5 395,414 + MPMX19_05676 0.21 -0.4 395,414 + MPMX19_05676 0.21 +0.4 395,414 + MPMX19_05676 0.21 -0.2 395,414 + MPMX19_05676 0.21 -0.8 395,414 + MPMX19_05676 0.21 +0.7 395,414 + MPMX19_05676 0.21 +0.3 395,414 + MPMX19_05676 0.21 -2.0 395,414 + MPMX19_05676 0.21 +0.3 395,414 + MPMX19_05676 0.21 +0.7 395,414 + MPMX19_05676 0.21 -0.2 395,414 + MPMX19_05676 0.21 -0.8 395,414 + MPMX19_05676 0.21 -0.6 395,414 + MPMX19_05676 0.21 -2.0 395,414 + MPMX19_05676 0.21 -1.1 395,414 + MPMX19_05676 0.21 -0.4 395,414 + MPMX19_05676 0.21 +0.1 395,414 + MPMX19_05676 0.21 -0.8 395,414 + MPMX19_05676 0.21 -1.4 395,414 + MPMX19_05676 0.21 -1.0 395,414 + MPMX19_05676 0.21 +0.7 395,414 + MPMX19_05676 0.21 +1.1 395,414 + MPMX19_05676 0.21 -0.9 395,414 + MPMX19_05676 0.21 -1.4 395,414 + MPMX19_05676 0.21 -0.0 395,414 + MPMX19_05676 0.21 -0.5 395,414 + MPMX19_05676 0.21 -1.0 395,415 - MPMX19_05676 0.21 +2.3 395,415 - MPMX19_05676 0.21 -0.1 395,415 - MPMX19_05676 0.21 -1.0 395,415 - MPMX19_05676 0.21 -0.7 395,415 - MPMX19_05676 0.21 -0.1 395,415 - MPMX19_05676 0.21 +0.1 395,415 - MPMX19_05676 0.21 -1.7 395,415 - MPMX19_05676 0.21 -1.5 395,415 - MPMX19_05676 0.21 -0.1 395,415 - MPMX19_05676 0.21 -0.5 395,415 - MPMX19_05676 0.21 -0.3 395,415 - MPMX19_05676 0.21 -0.6 395,415 - MPMX19_05676 0.21 +0.2 395,415 - MPMX19_05676 0.21 -0.4 395,415 - MPMX19_05676 0.21 +1.3 395,415 - MPMX19_05676 0.21 +1.7 395,415 - MPMX19_05676 0.21 +0.3 395,415 - MPMX19_05676 0.21 +0.1 395,415 - MPMX19_05676 0.21 -0.1 395,415 - MPMX19_05676 0.21 -0.8 395,415 - MPMX19_05676 0.21 -0.5 395,415 - MPMX19_05676 0.21 -1.5 395,415 - MPMX19_05676 0.21 -0.4 395,415 - MPMX19_05676 0.21 -1.8 395,415 - MPMX19_05676 0.21 -0.5 395,415 - MPMX19_05676 0.21 -1.0 395,415 - MPMX19_05676 0.21 +0.9 395,415 - MPMX19_05676 0.21 +0.7 395,415 - MPMX19_05676 0.21 -0.9 395,415 - MPMX19_05676 0.21 +0.3 395,415 - MPMX19_05676 0.21 +0.2 395,415 - MPMX19_05676 0.21 -1.8 395,415 - MPMX19_05676 0.21 -1.3 395,415 - MPMX19_05676 0.21 -0.3 395,415 - MPMX19_05676 0.21 -1.1 395,415 - MPMX19_05676 0.21 +0.4 395,415 - MPMX19_05676 0.21 -3.4 395,601 + -0.2 395,630 + -0.7 395,630 + -1.3 395,631 - -0.1 395,631 - -0.6 395,896 - MPMX19_05677 0.29 -1.2 395,896 - MPMX19_05677 0.29 -0.1 395,896 - MPMX19_05677 0.29 -2.0 395,925 + MPMX19_05677 0.34 +0.7 395,925 + MPMX19_05677 0.34 -0.6 395,925 + MPMX19_05677 0.34 -1.6 395,926 - MPMX19_05677 0.34 -0.7 395,926 - MPMX19_05677 0.34 +0.1 395,926 - MPMX19_05677 0.34 -0.1 395,926 - MPMX19_05677 0.34 -2.1 395,991 + MPMX19_05677 0.45 -0.7 396,102 + MPMX19_05677 0.63 -0.5 396,103 - MPMX19_05677 0.64 -2.0 396,103 - MPMX19_05677 0.64 -1.5 396,265 + +0.9 396,265 + -0.9 396,266 - -2.0 396,266 - +1.2 396,266 - +0.1 396,266 - -0.3 396,273 + -1.3 396,273 + -1.0 396,273 + -1.2 396,273 + -0.4 396,273 + +0.2 396,274 - -0.1 396,274 - +1.0 396,274 - -1.8 396,274 - -1.5 396,274 - -0.7 396,274 - -1.5 396,274 - -0.5 396,274 - +0.3 396,274 - -1.0 396,274 - -1.3 396,274 - +0.2 396,274 - -0.4 396,274 - -1.3 396,274 - -0.4 396,371 + -0.7 396,372 - -0.8 396,372 - -0.5 396,372 - -0.6 396,372 - -0.3 396,372 - -0.2 396,510 + MPMX19_05678 0.31 -1.3 396,510 + MPMX19_05678 0.31 +0.3 396,511 - MPMX19_05678 0.31 +0.9 396,636 + MPMX19_05678 0.60 -1.2 396,636 + MPMX19_05678 0.60 -0.4 396,636 + MPMX19_05678 0.60 -1.5 396,636 + MPMX19_05678 0.60 -0.2 396,636 + MPMX19_05678 0.60 -0.9 396,636 + MPMX19_05678 0.60 -0.3 396,636 + MPMX19_05678 0.60 +0.2 396,637 - MPMX19_05678 0.60 -1.3 396,637 - MPMX19_05678 0.60 +0.3 396,637 - MPMX19_05678 0.60 -0.3 396,637 - MPMX19_05678 0.60 -3.1 396,637 - MPMX19_05678 0.60 -0.3 396,637 - MPMX19_05678 0.60 -0.2 396,637 - MPMX19_05678 0.60 +0.3 396,736 + MPMX19_05678 0.83 -0.7 396,736 + MPMX19_05678 0.83 -1.4 396,736 + MPMX19_05678 0.83 +0.0 396,736 + MPMX19_05678 0.83 +0.6 396,736 + MPMX19_05678 0.83 +0.2 396,737 - MPMX19_05678 0.83 -0.3 396,737 - MPMX19_05678 0.83 -0.6 396,737 - MPMX19_05678 0.83 -2.5 396,737 - MPMX19_05678 0.83 +0.6 396,737 - MPMX19_05678 0.83 +0.3 396,737 - MPMX19_05678 0.83 -1.2 396,737 - MPMX19_05678 0.83 -0.7 396,737 - MPMX19_05678 0.83 -1.5 396,851 + -1.1 396,851 + -0.6 396,851 + -0.8 396,851 + +0.7 396,851 + -1.1 396,851 + -0.7 396,851 + +1.9 396,851 + -1.6 396,851 + -1.0 396,851 + -1.3 396,851 + -0.2 396,851 + -0.6 396,851 + -0.3 396,851 + -1.5 396,851 + -0.1 396,851 + -0.7 396,852 - -2.1 396,852 - +0.1 396,852 - -1.1 396,852 - -0.5 396,852 - -1.5 396,852 - -1.1 396,852 - +0.0 396,852 - -0.8 396,852 - +0.4 396,852 - -2.0 396,852 - -0.1 396,852 - +0.2 396,852 - -0.2 396,852 - -0.9 396,852 - -0.8 396,959 + MPMX19_05679 0.11 -2.1 396,960 - MPMX19_05679 0.11 -0.2 396,960 - MPMX19_05679 0.11 -0.7 396,995 + MPMX19_05679 0.14 -0.7 396,995 + MPMX19_05679 0.14 -1.2 396,995 + MPMX19_05679 0.14 -0.6 396,995 + MPMX19_05679 0.14 -2.3 396,996 - MPMX19_05679 0.14 -0.4 396,996 - MPMX19_05679 0.14 -0.3 396,996 - MPMX19_05679 0.14 -1.8 396,996 - MPMX19_05679 0.14 -1.2 396,996 - MPMX19_05679 0.14 -0.4 396,996 - MPMX19_05679 0.14 -0.4 397,298 + MPMX19_05679 0.37 +1.5 397,298 + MPMX19_05679 0.37 -0.7
Or see this region's nucleotide sequence