Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05650

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05649 and MPMX19_05650 are separated by 89 nucleotidesMPMX19_05650 and MPMX19_05651 are separated by 109 nucleotidesMPMX19_05651 and MPMX19_05652 are separated by 244 nucleotides MPMX19_05649: MPMX19_05649 - hypothetical protein, at 367,375 to 368,457 _05649 MPMX19_05650: MPMX19_05650 - Ribonuclease HII, at 368,547 to 369,212 _05650 MPMX19_05651: MPMX19_05651 - hypothetical protein, at 369,322 to 369,963 _05651 MPMX19_05652: MPMX19_05652 - hypothetical protein, at 370,208 to 370,822 _05652 Position (kb) 368 369 370Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 368.674 kb on + strand, within MPMX19_05650at 368.674 kb on + strand, within MPMX19_05650at 368.674 kb on + strand, within MPMX19_05650at 368.674 kb on + strand, within MPMX19_05650at 368.675 kb on - strand, within MPMX19_05650at 368.683 kb on + strand, within MPMX19_05650at 368.684 kb on - strand, within MPMX19_05650at 368.684 kb on - strand, within MPMX19_05650at 368.736 kb on - strand, within MPMX19_05650at 368.736 kb on - strand, within MPMX19_05650at 368.736 kb on - strand, within MPMX19_05650at 368.863 kb on + strand, within MPMX19_05650at 368.863 kb on + strand, within MPMX19_05650at 368.863 kb on + strand, within MPMX19_05650at 368.863 kb on + strand, within MPMX19_05650at 368.863 kb on + strand, within MPMX19_05650at 368.863 kb on + strand, within MPMX19_05650at 368.863 kb on + strand, within MPMX19_05650at 368.864 kb on - strand, within MPMX19_05650at 368.864 kb on - strand, within MPMX19_05650at 368.864 kb on - strand, within MPMX19_05650at 368.864 kb on - strand, within MPMX19_05650at 369.245 kb on + strandat 369.245 kb on + strandat 369.245 kb on + strandat 369.246 kb on - strandat 369.246 kb on - strandat 369.270 kb on + strandat 369.335 kb on + strandat 369.335 kb on + strandat 369.336 kb on - strandat 369.336 kb on - strandat 369.386 kb on + strandat 369.386 kb on + strandat 369.386 kb on + strandat 369.386 kb on + strandat 369.386 kb on + strandat 369.387 kb on - strand, within MPMX19_05651at 369.541 kb on + strand, within MPMX19_05651at 369.541 kb on + strand, within MPMX19_05651at 369.541 kb on + strand, within MPMX19_05651at 369.541 kb on + strand, within MPMX19_05651at 369.541 kb on + strand, within MPMX19_05651at 369.541 kb on + strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.592 kb on + strand, within MPMX19_05651at 369.592 kb on + strand, within MPMX19_05651at 369.592 kb on + strand, within MPMX19_05651at 369.593 kb on - strand, within MPMX19_05651at 369.593 kb on - strand, within MPMX19_05651at 369.622 kb on + strand, within MPMX19_05651at 369.622 kb on + strand, within MPMX19_05651at 369.622 kb on + strand, within MPMX19_05651at 369.622 kb on + strand, within MPMX19_05651at 369.622 kb on + strand, within MPMX19_05651at 369.622 kb on + strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.663 kb on + strand, within MPMX19_05651at 369.664 kb on - strand, within MPMX19_05651at 369.664 kb on - strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.851 kb on - strand, within MPMX19_05651at 369.851 kb on - strand, within MPMX19_05651at 369.851 kb on - strand, within MPMX19_05651at 369.851 kb on - strand, within MPMX19_05651at 369.851 kb on - strand, within MPMX19_05651at 369.851 kb on - strand, within MPMX19_05651at 369.851 kb on - strand, within MPMX19_05651at 369.851 kb on - strand, within MPMX19_05651at 369.851 kb on - strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.940 kb on + strandat 369.940 kb on + strandat 369.940 kb on + strandat 369.940 kb on + strandat 369.940 kb on + strandat 369.940 kb on + strandat 369.940 kb on + strandat 369.941 kb on - strandat 369.941 kb on - strandat 369.941 kb on - strandat 369.941 kb on - strandat 369.941 kb on - strandat 369.941 kb on - strandat 370.048 kb on - strandat 370.048 kb on - strandat 370.048 kb on - strandat 370.048 kb on - strandat 370.107 kb on + strandat 370.107 kb on + strandat 370.107 kb on + strandat 370.108 kb on - strandat 370.108 kb on - strandat 370.108 kb on - strandat 370.182 kb on + strandat 370.182 kb on + strandat 370.183 kb on - strandat 370.183 kb on - strandat 370.183 kb on - strandat 370.183 kb on - strandat 370.202 kb on + strandat 370.202 kb on + strandat 370.202 kb on + strandat 370.202 kb on + strandat 370.203 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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368,674 + MPMX19_05650 0.19 -1.6
368,674 + MPMX19_05650 0.19 -0.5
368,674 + MPMX19_05650 0.19 -0.7
368,674 + MPMX19_05650 0.19 +2.5
368,675 - MPMX19_05650 0.19 -0.1
368,683 + MPMX19_05650 0.20 -2.1
368,684 - MPMX19_05650 0.21 +0.1
368,684 - MPMX19_05650 0.21 -1.1
368,736 - MPMX19_05650 0.28 +0.7
368,736 - MPMX19_05650 0.28 -0.4
368,736 - MPMX19_05650 0.28 -0.7
368,863 + MPMX19_05650 0.47 -1.4
368,863 + MPMX19_05650 0.47 +0.7
368,863 + MPMX19_05650 0.47 +0.3
368,863 + MPMX19_05650 0.47 -0.2
368,863 + MPMX19_05650 0.47 -1.4
368,863 + MPMX19_05650 0.47 -0.8
368,863 + MPMX19_05650 0.47 -1.9
368,864 - MPMX19_05650 0.48 -1.5
368,864 - MPMX19_05650 0.48 -0.1
368,864 - MPMX19_05650 0.48 -0.3
368,864 - MPMX19_05650 0.48 +0.0
369,245 + +0.4
369,245 + -0.5
369,245 + -0.8
369,246 - -0.1
369,246 - +0.3
369,270 + +0.1
369,335 + -1.8
369,335 + -1.0
369,336 - -0.8
369,336 - -0.8
369,386 + -1.7
369,386 + +0.7
369,386 + -0.1
369,386 + -0.9
369,386 + +0.1
369,387 - MPMX19_05651 0.10 -0.9
369,541 + MPMX19_05651 0.34 +0.8
369,541 + MPMX19_05651 0.34 -1.3
369,541 + MPMX19_05651 0.34 +1.0
369,541 + MPMX19_05651 0.34 -0.3
369,541 + MPMX19_05651 0.34 -1.9
369,541 + MPMX19_05651 0.34 +0.4
369,542 - MPMX19_05651 0.34 -0.4
369,542 - MPMX19_05651 0.34 -0.5
369,542 - MPMX19_05651 0.34 -0.2
369,542 - MPMX19_05651 0.34 +0.1
369,542 - MPMX19_05651 0.34 -2.0
369,542 - MPMX19_05651 0.34 -0.8
369,542 - MPMX19_05651 0.34 -0.0
369,542 - MPMX19_05651 0.34 -0.3
369,542 - MPMX19_05651 0.34 +0.1
369,542 - MPMX19_05651 0.34 -0.8
369,542 - MPMX19_05651 0.34 +0.3
369,592 + MPMX19_05651 0.42 -0.1
369,592 + MPMX19_05651 0.42 +0.2
369,592 + MPMX19_05651 0.42 +0.4
369,593 - MPMX19_05651 0.42 -1.2
369,593 - MPMX19_05651 0.42 -0.7
369,622 + MPMX19_05651 0.47 -0.2
369,622 + MPMX19_05651 0.47 -0.3
369,622 + MPMX19_05651 0.47 +0.9
369,622 + MPMX19_05651 0.47 +0.4
369,622 + MPMX19_05651 0.47 +0.3
369,622 + MPMX19_05651 0.47 +0.2
369,623 - MPMX19_05651 0.47 -0.3
369,623 - MPMX19_05651 0.47 -0.6
369,623 - MPMX19_05651 0.47 -2.2
369,623 - MPMX19_05651 0.47 -0.0
369,623 - MPMX19_05651 0.47 -0.5
369,623 - MPMX19_05651 0.47 +0.3
369,623 - MPMX19_05651 0.47 +0.4
369,623 - MPMX19_05651 0.47 +0.4
369,623 - MPMX19_05651 0.47 +0.1
369,623 - MPMX19_05651 0.47 -1.8
369,623 - MPMX19_05651 0.47 +0.4
369,623 - MPMX19_05651 0.47 -0.1
369,623 - MPMX19_05651 0.47 +1.3
369,663 + MPMX19_05651 0.53 -1.4
369,664 - MPMX19_05651 0.53 +0.1
369,664 - MPMX19_05651 0.53 -1.5
369,850 + MPMX19_05651 0.82 -1.3
369,850 + MPMX19_05651 0.82 +0.3
369,850 + MPMX19_05651 0.82 -0.5
369,850 + MPMX19_05651 0.82 +0.1
369,850 + MPMX19_05651 0.82 -0.0
369,850 + MPMX19_05651 0.82 +0.5
369,850 + MPMX19_05651 0.82 -0.5
369,850 + MPMX19_05651 0.82 -0.0
369,850 + MPMX19_05651 0.82 +0.5
369,850 + MPMX19_05651 0.82 +0.1
369,850 + MPMX19_05651 0.82 -0.6
369,850 + MPMX19_05651 0.82 -0.6
369,850 + MPMX19_05651 0.82 -1.6
369,851 - MPMX19_05651 0.82 -0.4
369,851 - MPMX19_05651 0.82 -0.2
369,851 - MPMX19_05651 0.82 -1.7
369,851 - MPMX19_05651 0.82 -0.0
369,851 - MPMX19_05651 0.82 -0.3
369,851 - MPMX19_05651 0.82 -0.4
369,851 - MPMX19_05651 0.82 +0.1
369,851 - MPMX19_05651 0.82 -1.3
369,851 - MPMX19_05651 0.82 -0.0
369,853 + MPMX19_05651 0.83 -0.5
369,853 + MPMX19_05651 0.83 -1.1
369,853 + MPMX19_05651 0.83 -0.5
369,853 + MPMX19_05651 0.83 +0.4
369,853 + MPMX19_05651 0.83 +0.3
369,853 + MPMX19_05651 0.83 -2.0
369,853 + MPMX19_05651 0.83 -0.0
369,853 + MPMX19_05651 0.83 -0.5
369,853 + MPMX19_05651 0.83 -1.7
369,853 + MPMX19_05651 0.83 -0.1
369,853 + MPMX19_05651 0.83 -0.2
369,853 + MPMX19_05651 0.83 -0.6
369,853 + MPMX19_05651 0.83 -0.1
369,853 + MPMX19_05651 0.83 -1.4
369,853 + MPMX19_05651 0.83 +1.0
369,853 + MPMX19_05651 0.83 -2.2
369,853 + MPMX19_05651 0.83 +0.3
369,853 + MPMX19_05651 0.83 -1.1
369,853 + MPMX19_05651 0.83 -0.3
369,853 + MPMX19_05651 0.83 -1.2
369,853 + MPMX19_05651 0.83 +0.9
369,853 + MPMX19_05651 0.83 -1.5
369,853 + MPMX19_05651 0.83 -0.9
369,853 + MPMX19_05651 0.83 -3.1
369,853 + MPMX19_05651 0.83 +1.3
369,853 + MPMX19_05651 0.83 -1.4
369,853 + MPMX19_05651 0.83 +0.8
369,853 + MPMX19_05651 0.83 +0.2
369,854 - MPMX19_05651 0.83 -0.2
369,854 - MPMX19_05651 0.83 -0.9
369,854 - MPMX19_05651 0.83 +1.1
369,854 - MPMX19_05651 0.83 +0.3
369,854 - MPMX19_05651 0.83 +0.7
369,854 - MPMX19_05651 0.83 -1.3
369,854 - MPMX19_05651 0.83 -0.0
369,854 - MPMX19_05651 0.83 -0.5
369,854 - MPMX19_05651 0.83 +0.4
369,854 - MPMX19_05651 0.83 -1.0
369,854 - MPMX19_05651 0.83 -0.4
369,854 - MPMX19_05651 0.83 -0.1
369,854 - MPMX19_05651 0.83 -0.8
369,854 - MPMX19_05651 0.83 -0.3
369,854 - MPMX19_05651 0.83 -0.1
369,854 - MPMX19_05651 0.83 -1.1
369,940 + +0.0
369,940 + -1.8
369,940 + -0.1
369,940 + -1.3
369,940 + -0.9
369,940 + -0.8
369,940 + -0.8
369,941 - -1.6
369,941 - +0.1
369,941 - -2.4
369,941 - -0.0
369,941 - -1.0
369,941 - +0.3
370,048 - -0.7
370,048 - +0.7
370,048 - -0.7
370,048 - -0.9
370,107 + -0.3
370,107 + -0.2
370,107 + -0.3
370,108 - +0.3
370,108 - -1.4
370,108 - -0.2
370,182 + -0.5
370,182 + -0.6
370,183 - -1.8
370,183 - -0.1
370,183 - +0.4
370,183 - -2.4
370,202 + +0.8
370,202 + -1.7
370,202 + +0.8
370,202 + -1.1
370,203 - -0.5

Or see this region's nucleotide sequence