Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05591

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05590 and MPMX19_05591 are separated by 31 nucleotidesMPMX19_05591 and MPMX19_05592 are separated by 153 nucleotides MPMX19_05590: MPMX19_05590 - HTH-type transcriptional regulator SyrM 1, at 301,454 to 302,374 _05590 MPMX19_05591: MPMX19_05591 - hypothetical protein, at 302,406 to 302,834 _05591 MPMX19_05592: MPMX19_05592 - Glycine cleavage system transcriptional activator, at 302,988 to 303,872 _05592 Position (kb) 302 303Strain fitness (log2 ratio) -3 -2 -1 0 1at 301.419 kb on + strandat 301.420 kb on - strandat 301.443 kb on - strandat 301.641 kb on - strand, within MPMX19_05590at 301.641 kb on - strand, within MPMX19_05590at 301.641 kb on - strand, within MPMX19_05590at 302.021 kb on + strand, within MPMX19_05590at 302.021 kb on + strand, within MPMX19_05590at 302.021 kb on + strand, within MPMX19_05590at 302.021 kb on + strand, within MPMX19_05590at 302.021 kb on + strand, within MPMX19_05590at 302.022 kb on - strand, within MPMX19_05590at 302.022 kb on - strand, within MPMX19_05590at 302.022 kb on - strand, within MPMX19_05590at 302.022 kb on - strand, within MPMX19_05590at 302.022 kb on - strand, within MPMX19_05590at 302.022 kb on - strand, within MPMX19_05590at 302.135 kb on + strand, within MPMX19_05590at 302.136 kb on - strand, within MPMX19_05590at 302.366 kb on + strandat 302.367 kb on - strandat 302.372 kb on + strandat 302.372 kb on + strandat 302.373 kb on - strandat 302.373 kb on - strandat 302.407 kb on + strandat 302.408 kb on - strandat 302.408 kb on - strandat 302.521 kb on + strand, within MPMX19_05591at 302.521 kb on + strand, within MPMX19_05591at 302.521 kb on + strand, within MPMX19_05591at 302.521 kb on + strand, within MPMX19_05591at 302.521 kb on + strand, within MPMX19_05591at 302.521 kb on + strand, within MPMX19_05591at 302.521 kb on + strand, within MPMX19_05591at 302.521 kb on + strand, within MPMX19_05591at 302.522 kb on - strand, within MPMX19_05591at 302.522 kb on - strand, within MPMX19_05591at 302.522 kb on - strand, within MPMX19_05591at 302.522 kb on - strand, within MPMX19_05591at 302.522 kb on - strand, within MPMX19_05591at 302.522 kb on - strand, within MPMX19_05591at 302.767 kb on + strand, within MPMX19_05591at 302.768 kb on - strand, within MPMX19_05591at 302.768 kb on - strand, within MPMX19_05591at 302.768 kb on - strand, within MPMX19_05591at 302.768 kb on - strand, within MPMX19_05591at 302.768 kb on - strand, within MPMX19_05591at 302.768 kb on - strand, within MPMX19_05591at 302.768 kb on - strand, within MPMX19_05591at 302.768 kb on - strand, within MPMX19_05591at 302.768 kb on - strand, within MPMX19_05591at 302.917 kb on + strandat 302.918 kb on - strandat 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.198 kb on + strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.199 kb on - strand, within MPMX19_05592at 303.427 kb on - strand, within MPMX19_05592at 303.427 kb on - strand, within MPMX19_05592at 303.597 kb on + strand, within MPMX19_05592at 303.597 kb on + strand, within MPMX19_05592at 303.598 kb on - strand, within MPMX19_05592at 303.598 kb on - strand, within MPMX19_05592at 303.598 kb on - strand, within MPMX19_05592at 303.789 kb on + strandat 303.789 kb on + strandat 303.789 kb on + strandat 303.790 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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301,419 + -1.7
301,420 - -1.0
301,443 - -1.3
301,641 - MPMX19_05590 0.20 -0.8
301,641 - MPMX19_05590 0.20 -1.6
301,641 - MPMX19_05590 0.20 -1.1
302,021 + MPMX19_05590 0.62 -0.5
302,021 + MPMX19_05590 0.62 -2.9
302,021 + MPMX19_05590 0.62 +0.2
302,021 + MPMX19_05590 0.62 -0.8
302,021 + MPMX19_05590 0.62 +0.8
302,022 - MPMX19_05590 0.62 -0.6
302,022 - MPMX19_05590 0.62 -0.7
302,022 - MPMX19_05590 0.62 +0.5
302,022 - MPMX19_05590 0.62 -0.2
302,022 - MPMX19_05590 0.62 +0.1
302,022 - MPMX19_05590 0.62 -0.4
302,135 + MPMX19_05590 0.74 -2.6
302,136 - MPMX19_05590 0.74 -0.2
302,366 + +0.1
302,367 - +1.7
302,372 + -0.9
302,372 + +1.6
302,373 - -0.2
302,373 - -0.6
302,407 + -0.2
302,408 - -0.8
302,408 - -0.8
302,521 + MPMX19_05591 0.27 +0.5
302,521 + MPMX19_05591 0.27 +0.3
302,521 + MPMX19_05591 0.27 -0.2
302,521 + MPMX19_05591 0.27 -1.1
302,521 + MPMX19_05591 0.27 -0.6
302,521 + MPMX19_05591 0.27 +1.0
302,521 + MPMX19_05591 0.27 -0.2
302,521 + MPMX19_05591 0.27 +0.4
302,522 - MPMX19_05591 0.27 -0.2
302,522 - MPMX19_05591 0.27 -0.1
302,522 - MPMX19_05591 0.27 +1.0
302,522 - MPMX19_05591 0.27 +0.6
302,522 - MPMX19_05591 0.27 +0.1
302,522 - MPMX19_05591 0.27 -0.6
302,767 + MPMX19_05591 0.84 -2.1
302,768 - MPMX19_05591 0.84 -1.3
302,768 - MPMX19_05591 0.84 +0.5
302,768 - MPMX19_05591 0.84 -0.6
302,768 - MPMX19_05591 0.84 -1.1
302,768 - MPMX19_05591 0.84 -0.4
302,768 - MPMX19_05591 0.84 +0.9
302,768 - MPMX19_05591 0.84 -0.1
302,768 - MPMX19_05591 0.84 +0.3
302,768 - MPMX19_05591 0.84 -1.3
302,917 + -0.6
302,918 - -0.3
303,198 + MPMX19_05592 0.24 -1.2
303,198 + MPMX19_05592 0.24 -1.3
303,198 + MPMX19_05592 0.24 -0.6
303,198 + MPMX19_05592 0.24 -0.1
303,198 + MPMX19_05592 0.24 -2.5
303,198 + MPMX19_05592 0.24 -0.1
303,198 + MPMX19_05592 0.24 -0.5
303,198 + MPMX19_05592 0.24 -3.0
303,198 + MPMX19_05592 0.24 -0.1
303,198 + MPMX19_05592 0.24 -0.3
303,198 + MPMX19_05592 0.24 -1.5
303,198 + MPMX19_05592 0.24 -1.1
303,199 - MPMX19_05592 0.24 +1.4
303,199 - MPMX19_05592 0.24 -1.1
303,199 - MPMX19_05592 0.24 -1.2
303,199 - MPMX19_05592 0.24 -0.1
303,199 - MPMX19_05592 0.24 -0.2
303,199 - MPMX19_05592 0.24 -0.5
303,199 - MPMX19_05592 0.24 -1.5
303,199 - MPMX19_05592 0.24 +0.2
303,199 - MPMX19_05592 0.24 -0.9
303,199 - MPMX19_05592 0.24 -0.6
303,199 - MPMX19_05592 0.24 -0.7
303,199 - MPMX19_05592 0.24 -0.3
303,199 - MPMX19_05592 0.24 +0.5
303,199 - MPMX19_05592 0.24 -1.2
303,199 - MPMX19_05592 0.24 -0.5
303,199 - MPMX19_05592 0.24 +0.1
303,427 - MPMX19_05592 0.50 -0.8
303,427 - MPMX19_05592 0.50 -0.1
303,597 + MPMX19_05592 0.69 -1.4
303,597 + MPMX19_05592 0.69 +0.3
303,598 - MPMX19_05592 0.69 -0.5
303,598 - MPMX19_05592 0.69 -2.1
303,598 - MPMX19_05592 0.69 -0.2
303,789 + -1.3
303,789 + -0.3
303,789 + +0.1
303,790 - +0.4

Or see this region's nucleotide sequence