Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05547

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05545 and MPMX19_05546 are separated by 72 nucleotidesMPMX19_05546 and MPMX19_05547 are separated by 44 nucleotidesMPMX19_05547 and MPMX19_05548 overlap by 23 nucleotidesMPMX19_05548 and MPMX19_05549 are separated by 42 nucleotides MPMX19_05545: MPMX19_05545 - hypothetical protein, at 251,792 to 251,992 _05545 MPMX19_05546: MPMX19_05546 - D-methionine-binding lipoprotein MetQ, at 252,065 to 252,844 _05546 MPMX19_05547: MPMX19_05547 - Methionine import ATP-binding protein MetN, at 252,889 to 253,941 _05547 MPMX19_05548: MPMX19_05548 - D-methionine transport system permease protein MetI, at 253,919 to 254,587 _05548 MPMX19_05549: MPMX19_05549 - D-methionine-binding lipoprotein MetQ, at 254,630 to 255,421 _05549 Position (kb) 252 253 254Strain fitness (log2 ratio) -2 -1 0 1at 251.960 kb on + strand, within MPMX19_05545at 251.960 kb on + strand, within MPMX19_05545at 251.960 kb on + strand, within MPMX19_05545at 251.960 kb on + strand, within MPMX19_05545at 251.960 kb on + strand, within MPMX19_05545at 251.960 kb on + strand, within MPMX19_05545at 251.960 kb on + strand, within MPMX19_05545at 251.960 kb on + strand, within MPMX19_05545at 251.961 kb on - strand, within MPMX19_05545at 251.961 kb on - strand, within MPMX19_05545at 251.961 kb on - strand, within MPMX19_05545at 251.961 kb on - strand, within MPMX19_05545at 251.961 kb on - strand, within MPMX19_05545at 251.961 kb on - strand, within MPMX19_05545at 251.961 kb on - strand, within MPMX19_05545at 251.961 kb on - strand, within MPMX19_05545at 251.961 kb on - strand, within MPMX19_05545at 251.961 kb on - strand, within MPMX19_05545at 251.961 kb on - strand, within MPMX19_05545at 252.073 kb on + strandat 252.073 kb on + strandat 252.074 kb on - strandat 252.074 kb on - strandat 252.074 kb on - strandat 252.168 kb on - strand, within MPMX19_05546at 252.341 kb on + strand, within MPMX19_05546at 252.342 kb on - strand, within MPMX19_05546at 252.342 kb on - strand, within MPMX19_05546at 252.389 kb on + strand, within MPMX19_05546at 252.389 kb on + strand, within MPMX19_05546at 252.389 kb on + strand, within MPMX19_05546at 252.389 kb on + strand, within MPMX19_05546at 252.389 kb on + strand, within MPMX19_05546at 252.389 kb on + strand, within MPMX19_05546at 252.390 kb on - strand, within MPMX19_05546at 252.390 kb on - strand, within MPMX19_05546at 252.390 kb on - strand, within MPMX19_05546at 252.390 kb on - strand, within MPMX19_05546at 252.390 kb on - strand, within MPMX19_05546at 252.390 kb on - strand, within MPMX19_05546at 252.644 kb on + strand, within MPMX19_05546at 252.644 kb on + strand, within MPMX19_05546at 252.644 kb on + strand, within MPMX19_05546at 252.644 kb on + strand, within MPMX19_05546at 252.644 kb on + strand, within MPMX19_05546at 252.644 kb on + strand, within MPMX19_05546at 252.644 kb on + strand, within MPMX19_05546at 252.644 kb on + strand, within MPMX19_05546at 252.645 kb on - strand, within MPMX19_05546at 252.645 kb on - strand, within MPMX19_05546at 252.645 kb on - strand, within MPMX19_05546at 252.645 kb on - strand, within MPMX19_05546at 252.645 kb on - strand, within MPMX19_05546at 252.645 kb on - strand, within MPMX19_05546at 252.645 kb on - strand, within MPMX19_05546at 252.645 kb on - strand, within MPMX19_05546at 252.645 kb on - strand, within MPMX19_05546at 252.645 kb on - strand, within MPMX19_05546at 252.645 kb on - strand, within MPMX19_05546at 252.672 kb on - strand, within MPMX19_05546at 252.741 kb on + strand, within MPMX19_05546at 252.741 kb on + strand, within MPMX19_05546at 252.741 kb on + strand, within MPMX19_05546at 252.741 kb on + strand, within MPMX19_05546at 252.741 kb on + strand, within MPMX19_05546at 252.741 kb on + strand, within MPMX19_05546at 252.741 kb on + strand, within MPMX19_05546at 252.742 kb on - strand, within MPMX19_05546at 252.742 kb on - strand, within MPMX19_05546at 252.742 kb on - strand, within MPMX19_05546at 252.742 kb on - strand, within MPMX19_05546at 252.742 kb on - strand, within MPMX19_05546at 252.742 kb on - strand, within MPMX19_05546at 252.742 kb on - strand, within MPMX19_05546at 252.742 kb on - strand, within MPMX19_05546at 252.776 kb on + strandat 252.776 kb on + strandat 252.776 kb on + strandat 252.776 kb on + strandat 252.776 kb on + strandat 252.776 kb on + strandat 252.776 kb on + strandat 252.776 kb on + strandat 252.777 kb on - strandat 252.777 kb on - strandat 252.777 kb on - strandat 252.777 kb on - strandat 252.777 kb on - strandat 252.777 kb on - strandat 252.777 kb on - strandat 252.777 kb on - strandat 252.777 kb on - strandat 252.777 kb on - strandat 252.803 kb on - strandat 252.803 kb on - strandat 252.919 kb on + strandat 252.919 kb on + strandat 252.919 kb on + strandat 252.919 kb on + strandat 252.919 kb on + strandat 252.919 kb on + strandat 252.919 kb on + strandat 252.919 kb on + strandat 252.919 kb on + strandat 252.919 kb on + strandat 252.920 kb on - strandat 252.920 kb on - strandat 252.920 kb on - strandat 252.920 kb on - strandat 252.920 kb on - strandat 252.920 kb on - strandat 252.920 kb on - strandat 252.920 kb on - strandat 252.920 kb on - strandat 252.920 kb on - strandat 253.002 kb on + strand, within MPMX19_05547at 253.003 kb on - strand, within MPMX19_05547at 254.133 kb on + strand, within MPMX19_05548at 254.133 kb on + strand, within MPMX19_05548at 254.133 kb on + strand, within MPMX19_05548at 254.133 kb on + strand, within MPMX19_05548at 254.133 kb on + strand, within MPMX19_05548at 254.133 kb on + strand, within MPMX19_05548at 254.133 kb on + strand, within MPMX19_05548at 254.133 kb on + strand, within MPMX19_05548at 254.133 kb on + strand, within MPMX19_05548at 254.134 kb on - strand, within MPMX19_05548at 254.134 kb on - strand, within MPMX19_05548at 254.134 kb on - strand, within MPMX19_05548at 254.134 kb on - strand, within MPMX19_05548at 254.134 kb on - strand, within MPMX19_05548at 254.134 kb on - strand, within MPMX19_05548at 254.462 kb on + strand, within MPMX19_05548at 254.463 kb on - strand, within MPMX19_05548at 254.463 kb on - strand, within MPMX19_05548at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.816 kb on + strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.817 kb on - strand, within MPMX19_05549at 254.882 kb on + strand, within MPMX19_05549at 254.882 kb on + strand, within MPMX19_05549at 254.883 kb on - strand, within MPMX19_05549at 254.883 kb on - strand, within MPMX19_05549at 254.883 kb on - strand, within MPMX19_05549at 254.883 kb on - strand, within MPMX19_05549

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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251,960 + MPMX19_05545 0.84 -0.8
251,960 + MPMX19_05545 0.84 -0.3
251,960 + MPMX19_05545 0.84 -0.6
251,960 + MPMX19_05545 0.84 +0.2
251,960 + MPMX19_05545 0.84 -0.0
251,960 + MPMX19_05545 0.84 -0.3
251,960 + MPMX19_05545 0.84 -1.3
251,960 + MPMX19_05545 0.84 +0.1
251,961 - MPMX19_05545 0.84 -2.1
251,961 - MPMX19_05545 0.84 +1.0
251,961 - MPMX19_05545 0.84 -0.6
251,961 - MPMX19_05545 0.84 -0.7
251,961 - MPMX19_05545 0.84 -1.1
251,961 - MPMX19_05545 0.84 -0.0
251,961 - MPMX19_05545 0.84 -0.9
251,961 - MPMX19_05545 0.84 -2.1
251,961 - MPMX19_05545 0.84 +0.2
251,961 - MPMX19_05545 0.84 -0.9
251,961 - MPMX19_05545 0.84 +0.7
252,073 + +0.6
252,073 + +1.7
252,074 - -1.1
252,074 - -0.5
252,074 - +1.0
252,168 - MPMX19_05546 0.13 -1.1
252,341 + MPMX19_05546 0.35 +0.4
252,342 - MPMX19_05546 0.36 +0.0
252,342 - MPMX19_05546 0.36 +0.9
252,389 + MPMX19_05546 0.42 -1.8
252,389 + MPMX19_05546 0.42 -0.6
252,389 + MPMX19_05546 0.42 +1.1
252,389 + MPMX19_05546 0.42 +0.5
252,389 + MPMX19_05546 0.42 -1.9
252,389 + MPMX19_05546 0.42 +0.0
252,390 - MPMX19_05546 0.42 -0.5
252,390 - MPMX19_05546 0.42 +0.6
252,390 - MPMX19_05546 0.42 +0.8
252,390 - MPMX19_05546 0.42 +0.6
252,390 - MPMX19_05546 0.42 -0.8
252,390 - MPMX19_05546 0.42 +1.4
252,644 + MPMX19_05546 0.74 -0.4
252,644 + MPMX19_05546 0.74 +0.4
252,644 + MPMX19_05546 0.74 -0.6
252,644 + MPMX19_05546 0.74 -0.5
252,644 + MPMX19_05546 0.74 -1.1
252,644 + MPMX19_05546 0.74 -1.1
252,644 + MPMX19_05546 0.74 -0.4
252,644 + MPMX19_05546 0.74 +1.3
252,645 - MPMX19_05546 0.74 -0.5
252,645 - MPMX19_05546 0.74 -2.4
252,645 - MPMX19_05546 0.74 +0.9
252,645 - MPMX19_05546 0.74 -0.9
252,645 - MPMX19_05546 0.74 +0.2
252,645 - MPMX19_05546 0.74 -0.4
252,645 - MPMX19_05546 0.74 +0.7
252,645 - MPMX19_05546 0.74 +0.6
252,645 - MPMX19_05546 0.74 +0.6
252,645 - MPMX19_05546 0.74 -0.5
252,645 - MPMX19_05546 0.74 -0.9
252,672 - MPMX19_05546 0.78 -0.7
252,741 + MPMX19_05546 0.87 -0.9
252,741 + MPMX19_05546 0.87 -1.0
252,741 + MPMX19_05546 0.87 -0.1
252,741 + MPMX19_05546 0.87 +1.7
252,741 + MPMX19_05546 0.87 +0.3
252,741 + MPMX19_05546 0.87 -0.0
252,741 + MPMX19_05546 0.87 +0.6
252,742 - MPMX19_05546 0.87 -0.4
252,742 - MPMX19_05546 0.87 -1.3
252,742 - MPMX19_05546 0.87 +0.1
252,742 - MPMX19_05546 0.87 -1.6
252,742 - MPMX19_05546 0.87 +0.7
252,742 - MPMX19_05546 0.87 -0.0
252,742 - MPMX19_05546 0.87 +0.6
252,742 - MPMX19_05546 0.87 -0.3
252,776 + +0.9
252,776 + -0.3
252,776 + -0.4
252,776 + -0.3
252,776 + -0.5
252,776 + -0.0
252,776 + -1.4
252,776 + +0.7
252,777 - -0.3
252,777 - -1.1
252,777 - +1.1
252,777 - -2.3
252,777 - -0.5
252,777 - -1.1
252,777 - -0.4
252,777 - +0.6
252,777 - -0.3
252,777 - +0.6
252,803 - -1.9
252,803 - -2.0
252,919 + -0.2
252,919 + -0.9
252,919 + -0.6
252,919 + -0.9
252,919 + -1.3
252,919 + -0.5
252,919 + -0.7
252,919 + -0.9
252,919 + -0.2
252,919 + -0.9
252,920 - -2.0
252,920 - -0.1
252,920 - -0.3
252,920 - -1.7
252,920 - +0.3
252,920 - +0.5
252,920 - +0.1
252,920 - -1.4
252,920 - +1.5
252,920 - +0.3
253,002 + MPMX19_05547 0.11 -1.6
253,003 - MPMX19_05547 0.11 -0.4
254,133 + MPMX19_05548 0.32 -0.1
254,133 + MPMX19_05548 0.32 +0.5
254,133 + MPMX19_05548 0.32 +0.0
254,133 + MPMX19_05548 0.32 +0.7
254,133 + MPMX19_05548 0.32 +0.3
254,133 + MPMX19_05548 0.32 +0.4
254,133 + MPMX19_05548 0.32 -1.7
254,133 + MPMX19_05548 0.32 -0.6
254,133 + MPMX19_05548 0.32 -0.8
254,134 - MPMX19_05548 0.32 +1.0
254,134 - MPMX19_05548 0.32 -0.6
254,134 - MPMX19_05548 0.32 -0.2
254,134 - MPMX19_05548 0.32 -0.6
254,134 - MPMX19_05548 0.32 +0.9
254,134 - MPMX19_05548 0.32 +1.0
254,462 + MPMX19_05548 0.81 -1.4
254,463 - MPMX19_05548 0.81 -2.6
254,463 - MPMX19_05548 0.81 -0.1
254,816 + MPMX19_05549 0.23 -0.0
254,816 + MPMX19_05549 0.23 -1.9
254,816 + MPMX19_05549 0.23 -1.3
254,816 + MPMX19_05549 0.23 -2.0
254,816 + MPMX19_05549 0.23 +0.1
254,816 + MPMX19_05549 0.23 -0.0
254,816 + MPMX19_05549 0.23 +0.5
254,816 + MPMX19_05549 0.23 +0.9
254,816 + MPMX19_05549 0.23 -1.2
254,816 + MPMX19_05549 0.23 -0.5
254,816 + MPMX19_05549 0.23 -0.7
254,816 + MPMX19_05549 0.23 -0.6
254,816 + MPMX19_05549 0.23 -0.4
254,816 + MPMX19_05549 0.23 +0.1
254,816 + MPMX19_05549 0.23 +0.3
254,816 + MPMX19_05549 0.23 -0.5
254,816 + MPMX19_05549 0.23 -0.4
254,816 + MPMX19_05549 0.23 -1.3
254,816 + MPMX19_05549 0.23 -1.4
254,816 + MPMX19_05549 0.23 +0.2
254,816 + MPMX19_05549 0.23 -0.2
254,816 + MPMX19_05549 0.23 +0.1
254,816 + MPMX19_05549 0.23 -0.3
254,816 + MPMX19_05549 0.23 -1.6
254,816 + MPMX19_05549 0.23 +0.1
254,816 + MPMX19_05549 0.23 -0.3
254,817 - MPMX19_05549 0.24 -0.7
254,817 - MPMX19_05549 0.24 -1.6
254,817 - MPMX19_05549 0.24 -1.0
254,817 - MPMX19_05549 0.24 -1.7
254,817 - MPMX19_05549 0.24 -0.7
254,817 - MPMX19_05549 0.24 -0.3
254,817 - MPMX19_05549 0.24 -0.9
254,817 - MPMX19_05549 0.24 +0.0
254,817 - MPMX19_05549 0.24 +0.7
254,817 - MPMX19_05549 0.24 -0.3
254,817 - MPMX19_05549 0.24 +0.9
254,817 - MPMX19_05549 0.24 -0.8
254,817 - MPMX19_05549 0.24 -0.3
254,817 - MPMX19_05549 0.24 +0.5
254,817 - MPMX19_05549 0.24 -0.4
254,817 - MPMX19_05549 0.24 -0.5
254,817 - MPMX19_05549 0.24 -0.5
254,817 - MPMX19_05549 0.24 +0.7
254,817 - MPMX19_05549 0.24 -0.3
254,817 - MPMX19_05549 0.24 +0.3
254,817 - MPMX19_05549 0.24 -0.3
254,817 - MPMX19_05549 0.24 -2.1
254,882 + MPMX19_05549 0.32 -0.3
254,882 + MPMX19_05549 0.32 +0.7
254,883 - MPMX19_05549 0.32 -1.3
254,883 - MPMX19_05549 0.32 -0.9
254,883 - MPMX19_05549 0.32 -0.9
254,883 - MPMX19_05549 0.32 -0.8

Or see this region's nucleotide sequence