Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05498

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05496 and MPMX19_05497 are separated by 1 nucleotidesMPMX19_05497 and MPMX19_05498 are separated by 3 nucleotidesMPMX19_05498 and MPMX19_05499 overlap by 4 nucleotides MPMX19_05496: MPMX19_05496 - hypothetical protein, at 200,597 to 200,950 _05496 MPMX19_05497: MPMX19_05497 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 200,952 to 201,662 _05497 MPMX19_05498: MPMX19_05498 - Lipopolysaccharide export system ATP-binding protein LptB, at 201,666 to 202,565 _05498 MPMX19_05499: MPMX19_05499 - hypothetical protein, at 202,562 to 204,052 _05499 Position (kb) 201 202 203Strain fitness (log2 ratio) -2 -1 0 1at 200.820 kb on + strand, within MPMX19_05496at 200.820 kb on + strand, within MPMX19_05496at 200.820 kb on + strand, within MPMX19_05496at 200.820 kb on + strand, within MPMX19_05496at 200.972 kb on - strandat 202.373 kb on - strand, within MPMX19_05498at 202.373 kb on - strand, within MPMX19_05498at 202.373 kb on - strand, within MPMX19_05498at 202.373 kb on - strand, within MPMX19_05498at 202.373 kb on - strand, within MPMX19_05498at 202.373 kb on - strand, within MPMX19_05498at 202.373 kb on - strand, within MPMX19_05498at 202.373 kb on - strand, within MPMX19_05498at 202.373 kb on - strand, within MPMX19_05498at 202.373 kb on - strand, within MPMX19_05498at 202.373 kb on - strand, within MPMX19_05498

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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200,820 + MPMX19_05496 0.63 -1.2
200,820 + MPMX19_05496 0.63 -2.2
200,820 + MPMX19_05496 0.63 -1.6
200,820 + MPMX19_05496 0.63 -0.6
200,972 - -2.6
202,373 - MPMX19_05498 0.79 -1.4
202,373 - MPMX19_05498 0.79 -0.3
202,373 - MPMX19_05498 0.79 -0.5
202,373 - MPMX19_05498 0.79 -0.1
202,373 - MPMX19_05498 0.79 -1.6
202,373 - MPMX19_05498 0.79 -2.3
202,373 - MPMX19_05498 0.79 -1.6
202,373 - MPMX19_05498 0.79 -0.8
202,373 - MPMX19_05498 0.79 +0.5
202,373 - MPMX19_05498 0.79 -1.0
202,373 - MPMX19_05498 0.79 -0.1

Or see this region's nucleotide sequence