Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05436 and MPMX19_05437 are separated by 7 nucleotides MPMX19_05437 and MPMX19_05438 overlap by 8 nucleotides MPMX19_05438 and MPMX19_05439 are separated by 22 nucleotides MPMX19_05439 and MPMX19_05440 are separated by 73 nucleotides MPMX19_05440 and MPMX19_05441 are separated by 37 nucleotides
MPMX19_05436: MPMX19_05436 - putative isomerase YddE, at 127,144 to 127,950
_05436
MPMX19_05437: MPMX19_05437 - hypothetical protein, at 127,958 to 128,344
_05437
MPMX19_05438: MPMX19_05438 - hypothetical protein, at 128,337 to 128,681
_05438
MPMX19_05439: MPMX19_05439 - hypothetical protein, at 128,704 to 129,723
_05439
MPMX19_05440: MPMX19_05440 - hypothetical protein, at 129,797 to 130,318
_05440
MPMX19_05441: MPMX19_05441 - RNA polymerase sigma factor RpoH, at 130,356 to 131,246
_05441
Position (kb) 128
129
130 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 127.804 kb on + strand, within MPMX19_05436 at 127.804 kb on + strand, within MPMX19_05436 at 127.804 kb on + strand, within MPMX19_05436 at 127.805 kb on - strand, within MPMX19_05436 at 127.805 kb on - strand, within MPMX19_05436 at 127.805 kb on - strand, within MPMX19_05436 at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.925 kb on - strand at 127.925 kb on - strand at 127.925 kb on - strand at 127.925 kb on - strand at 127.925 kb on - strand at 127.925 kb on - strand at 127.925 kb on - strand at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.084 kb on + strand, within MPMX19_05437 at 128.084 kb on + strand, within MPMX19_05437 at 128.084 kb on + strand, within MPMX19_05437 at 128.085 kb on - strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.348 kb on + strand at 128.348 kb on + strand at 128.348 kb on + strand at 128.349 kb on - strand at 128.349 kb on - strand at 128.349 kb on - strand at 128.349 kb on - strand at 128.349 kb on - strand at 128.367 kb on + strand at 128.367 kb on + strand at 128.367 kb on + strand at 128.367 kb on + strand at 128.368 kb on - strand at 128.604 kb on + strand, within MPMX19_05438 at 128.604 kb on + strand, within MPMX19_05438 at 128.604 kb on + strand, within MPMX19_05438 at 128.605 kb on - strand, within MPMX19_05438 at 128.605 kb on - strand, within MPMX19_05438 at 128.620 kb on - strand, within MPMX19_05438 at 128.620 kb on - strand, within MPMX19_05438 at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.679 kb on + strand at 128.679 kb on + strand at 128.679 kb on + strand at 128.679 kb on + strand at 128.680 kb on - strand at 128.680 kb on - strand at 128.680 kb on - strand at 128.801 kb on + strand at 128.802 kb on - strand at 128.802 kb on - strand at 128.802 kb on - strand at 128.958 kb on + strand, within MPMX19_05439 at 128.958 kb on + strand, within MPMX19_05439 at 128.959 kb on - strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.152 kb on + strand, within MPMX19_05439 at 129.153 kb on - strand, within MPMX19_05439 at 129.153 kb on - strand, within MPMX19_05439 at 129.153 kb on - strand, within MPMX19_05439 at 129.153 kb on - strand, within MPMX19_05439 at 129.153 kb on - strand, within MPMX19_05439 at 129.153 kb on - strand, within MPMX19_05439 at 129.287 kb on + strand, within MPMX19_05439 at 129.287 kb on + strand, within MPMX19_05439 at 129.288 kb on - strand, within MPMX19_05439 at 129.288 kb on - strand, within MPMX19_05439 at 129.288 kb on - strand, within MPMX19_05439 at 129.414 kb on + strand, within MPMX19_05439 at 129.414 kb on + strand, within MPMX19_05439 at 129.414 kb on + strand, within MPMX19_05439 at 129.414 kb on + strand, within MPMX19_05439 at 129.415 kb on - strand, within MPMX19_05439 at 129.415 kb on - strand, within MPMX19_05439 at 129.438 kb on + strand, within MPMX19_05439 at 129.684 kb on + strand at 129.685 kb on - strand at 129.685 kb on - strand at 129.744 kb on + strand at 129.744 kb on + strand at 129.745 kb on - strand at 129.755 kb on + strand at 129.755 kb on + strand at 129.755 kb on + strand at 129.756 kb on - strand at 129.756 kb on - strand at 129.756 kb on - strand at 129.778 kb on + strand at 129.778 kb on + strand at 129.778 kb on + strand at 129.778 kb on + strand at 129.778 kb on + strand at 129.779 kb on - strand at 129.779 kb on - strand at 129.779 kb on - strand at 129.779 kb on - strand at 129.921 kb on + strand, within MPMX19_05440 at 129.921 kb on + strand, within MPMX19_05440 at 129.921 kb on + strand, within MPMX19_05440 at 129.921 kb on + strand, within MPMX19_05440 at 129.921 kb on + strand, within MPMX19_05440 at 129.921 kb on + strand, within MPMX19_05440 at 129.921 kb on + strand, within MPMX19_05440 at 129.922 kb on - strand, within MPMX19_05440 at 129.922 kb on - strand, within MPMX19_05440 at 129.922 kb on - strand, within MPMX19_05440 at 129.922 kb on - strand, within MPMX19_05440 at 130.132 kb on + strand, within MPMX19_05440 at 130.132 kb on + strand, within MPMX19_05440 at 130.132 kb on + strand, within MPMX19_05440 at 130.132 kb on + strand, within MPMX19_05440 at 130.133 kb on - strand, within MPMX19_05440 at 130.133 kb on - strand, within MPMX19_05440 at 130.357 kb on + strand at 130.357 kb on + strand at 130.358 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 127,804 + MPMX19_05436 0.82 -0.7 127,804 + MPMX19_05436 0.82 +0.4 127,804 + MPMX19_05436 0.82 -0.4 127,805 - MPMX19_05436 0.82 -0.7 127,805 - MPMX19_05436 0.82 -0.2 127,805 - MPMX19_05436 0.82 -0.3 127,924 + +0.8 127,924 + -1.9 127,924 + -0.2 127,924 + -0.9 127,924 + -0.5 127,924 + -1.5 127,924 + -1.7 127,924 + -0.3 127,925 - +0.6 127,925 - -0.3 127,925 - -0.2 127,925 - -0.9 127,925 - +1.7 127,925 - -0.7 127,925 - +0.1 128,057 + MPMX19_05437 0.26 +0.7 128,057 + MPMX19_05437 0.26 -0.6 128,057 + MPMX19_05437 0.26 -2.6 128,057 + MPMX19_05437 0.26 -0.7 128,057 + MPMX19_05437 0.26 -1.0 128,057 + MPMX19_05437 0.26 -0.0 128,057 + MPMX19_05437 0.26 -0.5 128,057 + MPMX19_05437 0.26 -0.4 128,058 - MPMX19_05437 0.26 +1.0 128,058 - MPMX19_05437 0.26 -0.9 128,058 - MPMX19_05437 0.26 +0.2 128,058 - MPMX19_05437 0.26 -0.6 128,058 - MPMX19_05437 0.26 -0.0 128,058 - MPMX19_05437 0.26 -0.4 128,084 + MPMX19_05437 0.33 -0.9 128,084 + MPMX19_05437 0.33 +0.1 128,084 + MPMX19_05437 0.33 -0.7 128,085 - MPMX19_05437 0.33 -0.3 128,168 + MPMX19_05437 0.54 +1.2 128,168 + MPMX19_05437 0.54 -0.6 128,168 + MPMX19_05437 0.54 -0.2 128,168 + MPMX19_05437 0.54 -0.8 128,168 + MPMX19_05437 0.54 +0.5 128,168 + MPMX19_05437 0.54 -0.1 128,168 + MPMX19_05437 0.54 +0.1 128,168 + MPMX19_05437 0.54 -1.0 128,168 + MPMX19_05437 0.54 -2.5 128,168 + MPMX19_05437 0.54 -0.3 128,168 + MPMX19_05437 0.54 -0.5 128,168 + MPMX19_05437 0.54 -0.3 128,168 + MPMX19_05437 0.54 -0.1 128,168 + MPMX19_05437 0.54 -2.9 128,169 - MPMX19_05437 0.55 -0.9 128,169 - MPMX19_05437 0.55 -0.0 128,169 - MPMX19_05437 0.55 -0.0 128,169 - MPMX19_05437 0.55 -1.7 128,169 - MPMX19_05437 0.55 -1.0 128,169 - MPMX19_05437 0.55 +0.2 128,169 - MPMX19_05437 0.55 +1.7 128,169 - MPMX19_05437 0.55 -0.1 128,169 - MPMX19_05437 0.55 -1.5 128,169 - MPMX19_05437 0.55 -0.9 128,169 - MPMX19_05437 0.55 -0.6 128,169 - MPMX19_05437 0.55 -0.1 128,169 - MPMX19_05437 0.55 +0.3 128,169 - MPMX19_05437 0.55 -1.4 128,169 - MPMX19_05437 0.55 -0.7 128,169 - MPMX19_05437 0.55 -0.4 128,174 + MPMX19_05437 0.56 -0.3 128,174 + MPMX19_05437 0.56 -0.4 128,174 + MPMX19_05437 0.56 -0.6 128,174 + MPMX19_05437 0.56 +1.1 128,174 + MPMX19_05437 0.56 -1.6 128,174 + MPMX19_05437 0.56 -0.3 128,174 + MPMX19_05437 0.56 -0.0 128,174 + MPMX19_05437 0.56 +0.7 128,174 + MPMX19_05437 0.56 +0.0 128,174 + MPMX19_05437 0.56 +0.1 128,174 + MPMX19_05437 0.56 -0.9 128,174 + MPMX19_05437 0.56 +0.8 128,174 + MPMX19_05437 0.56 +0.2 128,174 + MPMX19_05437 0.56 -0.6 128,174 + MPMX19_05437 0.56 +0.2 128,174 + MPMX19_05437 0.56 +0.5 128,174 + MPMX19_05437 0.56 -0.6 128,175 - MPMX19_05437 0.56 +0.4 128,175 - MPMX19_05437 0.56 -0.9 128,175 - MPMX19_05437 0.56 -0.4 128,175 - MPMX19_05437 0.56 +1.1 128,175 - MPMX19_05437 0.56 -2.1 128,175 - MPMX19_05437 0.56 -2.1 128,175 - MPMX19_05437 0.56 -1.4 128,175 - MPMX19_05437 0.56 -0.6 128,175 - MPMX19_05437 0.56 +0.7 128,175 - MPMX19_05437 0.56 -0.3 128,348 + -0.1 128,348 + -1.6 128,348 + +1.2 128,349 - +0.1 128,349 - -0.4 128,349 - +0.6 128,349 - -0.3 128,349 - -0.7 128,367 + +0.3 128,367 + +0.6 128,367 + +0.1 128,367 + -1.7 128,368 - -0.9 128,604 + MPMX19_05438 0.77 -1.5 128,604 + MPMX19_05438 0.77 -0.9 128,604 + MPMX19_05438 0.77 -1.6 128,605 - MPMX19_05438 0.78 -1.4 128,605 - MPMX19_05438 0.78 -0.9 128,620 - MPMX19_05438 0.82 -1.7 128,620 - MPMX19_05438 0.82 -1.0 128,667 + -1.4 128,667 + +0.1 128,667 + -1.6 128,667 + -0.4 128,667 + -1.9 128,667 + -0.9 128,667 + +0.4 128,667 + -0.2 128,667 + -0.3 128,667 + -0.4 128,667 + -0.1 128,667 + -0.0 128,667 + -0.4 128,667 + -1.4 128,667 + +0.2 128,667 + -0.9 128,667 + -1.4 128,668 - +0.1 128,668 - -0.7 128,668 - -0.8 128,668 - -1.1 128,668 - -0.9 128,668 - -1.3 128,668 - -1.4 128,668 - +0.4 128,668 - -0.2 128,668 - -0.8 128,668 - +0.3 128,668 - -0.6 128,668 - -2.0 128,668 - +0.1 128,679 + -0.8 128,679 + -1.6 128,679 + -3.7 128,679 + +1.4 128,680 - -0.0 128,680 - -0.9 128,680 - -1.1 128,801 + -1.1 128,802 - -0.3 128,802 - -2.1 128,802 - +0.7 128,958 + MPMX19_05439 0.25 -0.5 128,958 + MPMX19_05439 0.25 -0.4 128,959 - MPMX19_05439 0.25 -0.4 129,152 + MPMX19_05439 0.44 -0.4 129,152 + MPMX19_05439 0.44 -0.3 129,152 + MPMX19_05439 0.44 +0.1 129,152 + MPMX19_05439 0.44 +0.4 129,152 + MPMX19_05439 0.44 -0.7 129,152 + MPMX19_05439 0.44 +1.5 129,152 + MPMX19_05439 0.44 -0.0 129,152 + MPMX19_05439 0.44 -1.2 129,153 - MPMX19_05439 0.44 -0.3 129,153 - MPMX19_05439 0.44 -2.1 129,153 - MPMX19_05439 0.44 -0.7 129,153 - MPMX19_05439 0.44 -0.6 129,153 - MPMX19_05439 0.44 -0.3 129,153 - MPMX19_05439 0.44 -1.5 129,287 + MPMX19_05439 0.57 -1.3 129,287 + MPMX19_05439 0.57 -1.1 129,288 - MPMX19_05439 0.57 -0.4 129,288 - MPMX19_05439 0.57 +0.8 129,288 - MPMX19_05439 0.57 -0.5 129,414 + MPMX19_05439 0.70 +0.5 129,414 + MPMX19_05439 0.70 -0.6 129,414 + MPMX19_05439 0.70 +0.1 129,414 + MPMX19_05439 0.70 -1.7 129,415 - MPMX19_05439 0.70 -1.0 129,415 - MPMX19_05439 0.70 +0.7 129,438 + MPMX19_05439 0.72 -1.1 129,684 + -1.6 129,685 - +1.4 129,685 - -1.2 129,744 + -0.5 129,744 + +0.3 129,745 - -0.8 129,755 + -1.5 129,755 + +0.5 129,755 + +0.3 129,756 - -1.1 129,756 - -1.6 129,756 - -1.2 129,778 + -0.4 129,778 + +0.5 129,778 + -0.2 129,778 + -0.1 129,778 + -0.9 129,779 - -1.2 129,779 - -0.7 129,779 - +0.5 129,779 - -0.6 129,921 + MPMX19_05440 0.24 +0.3 129,921 + MPMX19_05440 0.24 +0.4 129,921 + MPMX19_05440 0.24 -0.6 129,921 + MPMX19_05440 0.24 -0.1 129,921 + MPMX19_05440 0.24 -1.4 129,921 + MPMX19_05440 0.24 +0.3 129,921 + MPMX19_05440 0.24 -0.7 129,922 - MPMX19_05440 0.24 +0.4 129,922 - MPMX19_05440 0.24 +0.1 129,922 - MPMX19_05440 0.24 -0.5 129,922 - MPMX19_05440 0.24 -0.8 130,132 + MPMX19_05440 0.64 -0.9 130,132 + MPMX19_05440 0.64 -1.2 130,132 + MPMX19_05440 0.64 +1.1 130,132 + MPMX19_05440 0.64 -1.3 130,133 - MPMX19_05440 0.64 +0.3 130,133 - MPMX19_05440 0.64 +1.7 130,357 + -0.3 130,357 + -1.2 130,358 - -1.1
Or see this region's nucleotide sequence