Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05431

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05430 and MPMX19_05431 are separated by 142 nucleotidesMPMX19_05431 and MPMX19_05432 are separated by 185 nucleotides MPMX19_05430: MPMX19_05430 - HTH-type transcriptional regulator DmlR, at 122,016 to 122,933 _05430 MPMX19_05431: MPMX19_05431 - 1-deoxyxylulose-5-phosphate synthase YajO, at 123,076 to 124,110 _05431 MPMX19_05432: MPMX19_05432 - hypothetical protein, at 124,296 to 124,961 _05432 Position (kb) 123 124 125Strain fitness (log2 ratio) -2 -1 0 1 2at 122.104 kb on + strandat 122.104 kb on + strandat 122.419 kb on + strand, within MPMX19_05430at 122.419 kb on + strand, within MPMX19_05430at 122.419 kb on + strand, within MPMX19_05430at 122.419 kb on + strand, within MPMX19_05430at 122.420 kb on - strand, within MPMX19_05430at 122.985 kb on + strandat 122.985 kb on + strandat 122.985 kb on + strandat 122.985 kb on + strandat 122.986 kb on - strandat 122.986 kb on - strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.009 kb on - strandat 123.009 kb on - strandat 123.009 kb on - strandat 123.009 kb on - strandat 123.009 kb on - strandat 123.009 kb on - strandat 123.009 kb on - strandat 123.009 kb on - strandat 123.009 kb on - strandat 123.009 kb on - strandat 123.009 kb on - strandat 123.010 kb on + strandat 123.010 kb on + strandat 123.010 kb on + strandat 123.010 kb on + strandat 123.010 kb on + strandat 123.010 kb on + strandat 123.011 kb on - strandat 123.011 kb on - strandat 123.011 kb on - strandat 123.011 kb on - strandat 123.011 kb on - strandat 123.011 kb on - strandat 123.011 kb on - strandat 123.011 kb on - strandat 123.011 kb on - strandat 123.011 kb on - strandat 123.259 kb on + strand, within MPMX19_05431at 123.260 kb on - strand, within MPMX19_05431at 123.260 kb on - strand, within MPMX19_05431at 123.260 kb on - strand, within MPMX19_05431at 123.260 kb on - strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.438 kb on + strand, within MPMX19_05431at 123.438 kb on + strand, within MPMX19_05431at 123.438 kb on + strand, within MPMX19_05431at 123.438 kb on + strand, within MPMX19_05431at 123.438 kb on + strand, within MPMX19_05431at 123.438 kb on + strand, within MPMX19_05431at 123.439 kb on - strand, within MPMX19_05431at 123.439 kb on - strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.536 kb on - strand, within MPMX19_05431at 123.536 kb on - strand, within MPMX19_05431at 123.536 kb on - strand, within MPMX19_05431at 123.536 kb on - strand, within MPMX19_05431at 123.536 kb on - strand, within MPMX19_05431at 123.536 kb on - strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.635 kb on - strand, within MPMX19_05431at 123.635 kb on - strand, within MPMX19_05431at 123.635 kb on - strand, within MPMX19_05431at 123.635 kb on - strand, within MPMX19_05431at 123.635 kb on - strand, within MPMX19_05431at 123.635 kb on - strand, within MPMX19_05431at 123.635 kb on - strand, within MPMX19_05431at 123.655 kb on + strand, within MPMX19_05431at 123.655 kb on + strand, within MPMX19_05431at 123.655 kb on + strand, within MPMX19_05431at 123.655 kb on + strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.829 kb on + strand, within MPMX19_05431at 123.829 kb on + strand, within MPMX19_05431at 123.830 kb on - strand, within MPMX19_05431at 123.830 kb on - strand, within MPMX19_05431at 123.830 kb on - strand, within MPMX19_05431at 124.054 kb on + strandat 124.054 kb on + strandat 124.054 kb on + strandat 124.054 kb on + strandat 124.054 kb on + strandat 124.055 kb on - strandat 124.057 kb on + strandat 124.209 kb on + strandat 124.210 kb on - strandat 124.210 kb on - strandat 124.342 kb on - strandat 124.518 kb on + strand, within MPMX19_05432at 124.518 kb on + strand, within MPMX19_05432at 124.518 kb on + strand, within MPMX19_05432at 124.519 kb on - strand, within MPMX19_05432at 124.519 kb on - strand, within MPMX19_05432at 124.519 kb on - strand, within MPMX19_05432at 124.563 kb on + strand, within MPMX19_05432at 124.563 kb on + strand, within MPMX19_05432at 124.563 kb on + strand, within MPMX19_05432at 124.563 kb on + strand, within MPMX19_05432at 124.563 kb on + strand, within MPMX19_05432at 124.563 kb on + strand, within MPMX19_05432at 124.564 kb on - strand, within MPMX19_05432at 124.582 kb on - strand, within MPMX19_05432at 124.582 kb on - strand, within MPMX19_05432at 124.837 kb on - strand, within MPMX19_05432at 124.959 kb on + strandat 124.959 kb on + strandat 124.959 kb on + strandat 124.960 kb on - strandat 125.018 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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122,104 + -0.3
122,104 + -0.6
122,419 + MPMX19_05430 0.44 +0.0
122,419 + MPMX19_05430 0.44 +0.4
122,419 + MPMX19_05430 0.44 +2.0
122,419 + MPMX19_05430 0.44 +1.0
122,420 - MPMX19_05430 0.44 -1.6
122,985 + -0.5
122,985 + -0.1
122,985 + +0.4
122,985 + -0.4
122,986 - +0.1
122,986 - -0.9
123,008 + -1.2
123,008 + -1.0
123,008 + -0.4
123,008 + -0.4
123,008 + -0.5
123,008 + -0.7
123,008 + +0.4
123,008 + -0.5
123,008 + -1.5
123,008 + -0.2
123,008 + +0.1
123,008 + +0.7
123,009 - -0.0
123,009 - -0.5
123,009 - -0.3
123,009 - +0.2
123,009 - +0.1
123,009 - +0.4
123,009 - -0.9
123,009 - -1.1
123,009 - +0.3
123,009 - -1.0
123,009 - -1.7
123,010 + +0.5
123,010 + -0.0
123,010 + -0.1
123,010 + -0.4
123,010 + +0.4
123,010 + -0.1
123,011 - -1.2
123,011 - -2.4
123,011 - +0.7
123,011 - -0.1
123,011 - +0.3
123,011 - +0.3
123,011 - -0.1
123,011 - +0.9
123,011 - -0.8
123,011 - +0.5
123,259 + MPMX19_05431 0.18 -0.4
123,260 - MPMX19_05431 0.18 -0.9
123,260 - MPMX19_05431 0.18 -1.0
123,260 - MPMX19_05431 0.18 -0.9
123,260 - MPMX19_05431 0.18 -0.6
123,436 + MPMX19_05431 0.35 -0.7
123,436 + MPMX19_05431 0.35 +0.5
123,436 + MPMX19_05431 0.35 -0.4
123,436 + MPMX19_05431 0.35 -0.9
123,436 + MPMX19_05431 0.35 -1.5
123,436 + MPMX19_05431 0.35 -1.7
123,436 + MPMX19_05431 0.35 +0.5
123,436 + MPMX19_05431 0.35 -1.1
123,436 + MPMX19_05431 0.35 -0.8
123,436 + MPMX19_05431 0.35 +0.4
123,436 + MPMX19_05431 0.35 -0.3
123,436 + MPMX19_05431 0.35 -0.3
123,437 - MPMX19_05431 0.35 +1.1
123,437 - MPMX19_05431 0.35 -1.7
123,437 - MPMX19_05431 0.35 -1.3
123,437 - MPMX19_05431 0.35 +1.1
123,437 - MPMX19_05431 0.35 -0.2
123,437 - MPMX19_05431 0.35 -0.3
123,437 - MPMX19_05431 0.35 -1.3
123,437 - MPMX19_05431 0.35 +0.6
123,437 - MPMX19_05431 0.35 -1.6
123,437 - MPMX19_05431 0.35 -1.1
123,437 - MPMX19_05431 0.35 -0.3
123,438 + MPMX19_05431 0.35 -1.6
123,438 + MPMX19_05431 0.35 +0.3
123,438 + MPMX19_05431 0.35 -0.6
123,438 + MPMX19_05431 0.35 +0.6
123,438 + MPMX19_05431 0.35 -1.0
123,438 + MPMX19_05431 0.35 -1.5
123,439 - MPMX19_05431 0.35 -1.9
123,439 - MPMX19_05431 0.35 -2.0
123,535 + MPMX19_05431 0.44 +0.4
123,535 + MPMX19_05431 0.44 -0.6
123,535 + MPMX19_05431 0.44 -2.7
123,535 + MPMX19_05431 0.44 +1.2
123,535 + MPMX19_05431 0.44 +1.0
123,535 + MPMX19_05431 0.44 -0.3
123,535 + MPMX19_05431 0.44 -1.3
123,535 + MPMX19_05431 0.44 -1.0
123,535 + MPMX19_05431 0.44 -0.6
123,535 + MPMX19_05431 0.44 -0.9
123,536 - MPMX19_05431 0.44 -1.1
123,536 - MPMX19_05431 0.44 +0.3
123,536 - MPMX19_05431 0.44 +0.1
123,536 - MPMX19_05431 0.44 -0.6
123,536 - MPMX19_05431 0.44 -0.5
123,536 - MPMX19_05431 0.44 -0.3
123,631 + MPMX19_05431 0.54 -0.8
123,631 + MPMX19_05431 0.54 -2.2
123,631 + MPMX19_05431 0.54 -1.4
123,631 + MPMX19_05431 0.54 +0.0
123,631 + MPMX19_05431 0.54 +0.3
123,631 + MPMX19_05431 0.54 -2.2
123,631 + MPMX19_05431 0.54 +0.4
123,631 + MPMX19_05431 0.54 -0.0
123,631 + MPMX19_05431 0.54 +0.4
123,631 + MPMX19_05431 0.54 -0.2
123,631 + MPMX19_05431 0.54 -1.4
123,631 + MPMX19_05431 0.54 -2.0
123,632 - MPMX19_05431 0.54 -2.7
123,632 - MPMX19_05431 0.54 +0.1
123,632 - MPMX19_05431 0.54 +0.3
123,632 - MPMX19_05431 0.54 -0.9
123,632 - MPMX19_05431 0.54 -0.3
123,632 - MPMX19_05431 0.54 -1.0
123,632 - MPMX19_05431 0.54 +0.1
123,632 - MPMX19_05431 0.54 -0.9
123,632 - MPMX19_05431 0.54 -0.7
123,634 + MPMX19_05431 0.54 +0.3
123,634 + MPMX19_05431 0.54 -0.3
123,634 + MPMX19_05431 0.54 -0.5
123,634 + MPMX19_05431 0.54 +0.1
123,634 + MPMX19_05431 0.54 -1.9
123,634 + MPMX19_05431 0.54 -0.4
123,634 + MPMX19_05431 0.54 -1.1
123,634 + MPMX19_05431 0.54 -0.2
123,634 + MPMX19_05431 0.54 -0.1
123,634 + MPMX19_05431 0.54 -0.1
123,635 - MPMX19_05431 0.54 -1.1
123,635 - MPMX19_05431 0.54 -2.2
123,635 - MPMX19_05431 0.54 +0.3
123,635 - MPMX19_05431 0.54 -2.2
123,635 - MPMX19_05431 0.54 -1.9
123,635 - MPMX19_05431 0.54 -0.1
123,635 - MPMX19_05431 0.54 +0.3
123,655 + MPMX19_05431 0.56 -0.9
123,655 + MPMX19_05431 0.56 -1.1
123,655 + MPMX19_05431 0.56 -0.1
123,655 + MPMX19_05431 0.56 -0.1
123,656 - MPMX19_05431 0.56 +1.2
123,656 - MPMX19_05431 0.56 +0.7
123,656 - MPMX19_05431 0.56 -1.0
123,656 - MPMX19_05431 0.56 +0.4
123,656 - MPMX19_05431 0.56 -0.0
123,656 - MPMX19_05431 0.56 -0.3
123,656 - MPMX19_05431 0.56 -0.4
123,656 - MPMX19_05431 0.56 +0.1
123,656 - MPMX19_05431 0.56 -0.1
123,656 - MPMX19_05431 0.56 +0.3
123,656 - MPMX19_05431 0.56 +0.7
123,656 - MPMX19_05431 0.56 -0.9
123,829 + MPMX19_05431 0.73 -0.9
123,829 + MPMX19_05431 0.73 -0.7
123,830 - MPMX19_05431 0.73 -0.5
123,830 - MPMX19_05431 0.73 -1.3
123,830 - MPMX19_05431 0.73 +1.3
124,054 + -0.1
124,054 + +0.9
124,054 + -1.1
124,054 + +0.7
124,054 + -0.7
124,055 - -0.6
124,057 + -0.3
124,209 + -0.9
124,210 - -0.0
124,210 - -1.0
124,342 - -1.5
124,518 + MPMX19_05432 0.33 -1.8
124,518 + MPMX19_05432 0.33 +1.1
124,518 + MPMX19_05432 0.33 +0.7
124,519 - MPMX19_05432 0.33 -2.3
124,519 - MPMX19_05432 0.33 -0.3
124,519 - MPMX19_05432 0.33 -1.2
124,563 + MPMX19_05432 0.40 -1.7
124,563 + MPMX19_05432 0.40 -0.2
124,563 + MPMX19_05432 0.40 -0.6
124,563 + MPMX19_05432 0.40 -0.6
124,563 + MPMX19_05432 0.40 -1.5
124,563 + MPMX19_05432 0.40 +0.6
124,564 - MPMX19_05432 0.40 +0.4
124,582 - MPMX19_05432 0.43 +0.7
124,582 - MPMX19_05432 0.43 -0.9
124,837 - MPMX19_05432 0.81 -0.7
124,959 + -1.5
124,959 + -0.4
124,959 + -1.8
124,960 - -0.2
125,018 + +0.6

Or see this region's nucleotide sequence