Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05377 and MPMX19_05378 are separated by 240 nucleotides MPMX19_05378 and MPMX19_05379 are separated by 261 nucleotides
MPMX19_05377: MPMX19_05377 - hypothetical protein, at 50,117 to 50,806
_05377
MPMX19_05378: MPMX19_05378 - hypothetical protein, at 51,047 to 52,564
_05378
MPMX19_05379: MPMX19_05379 - hypothetical protein, at 52,826 to 54,238
_05379
Position (kb) 51
52
53 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 50.103 kb on + strand at 50.103 kb on + strand at 50.103 kb on + strand at 50.104 kb on - strand at 50.179 kb on - strand at 50.202 kb on + strand, within MPMX19_05377 at 50.202 kb on + strand, within MPMX19_05377 at 50.202 kb on + strand, within MPMX19_05377 at 50.208 kb on + strand, within MPMX19_05377 at 50.208 kb on + strand, within MPMX19_05377 at 50.208 kb on + strand, within MPMX19_05377 at 50.208 kb on + strand, within MPMX19_05377 at 50.208 kb on + strand, within MPMX19_05377 at 50.208 kb on + strand, within MPMX19_05377 at 50.208 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.773 kb on + strand at 50.773 kb on + strand at 50.774 kb on - strand at 50.774 kb on - strand at 50.774 kb on - strand at 50.788 kb on + strand at 50.788 kb on + strand at 50.788 kb on + strand at 50.788 kb on + strand at 50.789 kb on - strand at 50.789 kb on - strand at 50.789 kb on - strand at 50.789 kb on - strand at 50.789 kb on - strand at 50.789 kb on - strand at 50.849 kb on + strand at 50.850 kb on - strand at 50.856 kb on + strand at 50.856 kb on + strand at 50.856 kb on + strand at 50.857 kb on - strand at 50.857 kb on - strand at 50.929 kb on + strand at 50.929 kb on + strand at 50.929 kb on + strand at 50.929 kb on + strand at 50.929 kb on + strand at 50.930 kb on - strand at 50.930 kb on - strand at 50.930 kb on - strand at 50.930 kb on - strand at 50.930 kb on - strand at 51.053 kb on + strand at 51.054 kb on - strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.230 kb on - strand, within MPMX19_05378 at 51.278 kb on + strand, within MPMX19_05378 at 51.278 kb on + strand, within MPMX19_05378 at 51.279 kb on - strand, within MPMX19_05378 at 51.279 kb on - strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.463 kb on + strand, within MPMX19_05378 at 51.463 kb on - strand, within MPMX19_05378 at 51.463 kb on - strand, within MPMX19_05378 at 51.463 kb on - strand, within MPMX19_05378 at 51.463 kb on - strand, within MPMX19_05378 at 51.463 kb on - strand, within MPMX19_05378 at 51.463 kb on - strand, within MPMX19_05378 at 51.774 kb on + strand, within MPMX19_05378 at 51.774 kb on + strand, within MPMX19_05378 at 51.774 kb on + strand, within MPMX19_05378 at 51.774 kb on + strand, within MPMX19_05378 at 51.774 kb on + strand, within MPMX19_05378 at 51.775 kb on - strand, within MPMX19_05378 at 51.775 kb on - strand, within MPMX19_05378 at 51.775 kb on - strand, within MPMX19_05378 at 51.807 kb on + strand, within MPMX19_05378 at 51.807 kb on + strand, within MPMX19_05378 at 51.808 kb on - strand, within MPMX19_05378 at 51.808 kb on - strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.985 kb on + strand, within MPMX19_05378 at 51.985 kb on + strand, within MPMX19_05378 at 51.985 kb on + strand, within MPMX19_05378 at 51.986 kb on - strand, within MPMX19_05378 at 51.986 kb on - strand, within MPMX19_05378 at 51.986 kb on - strand, within MPMX19_05378 at 51.986 kb on - strand, within MPMX19_05378 at 52.011 kb on + strand, within MPMX19_05378 at 52.011 kb on + strand, within MPMX19_05378 at 52.011 kb on + strand, within MPMX19_05378 at 52.011 kb on + strand, within MPMX19_05378 at 52.012 kb on - strand, within MPMX19_05378 at 52.012 kb on - strand, within MPMX19_05378 at 52.012 kb on - strand, within MPMX19_05378 at 52.012 kb on - strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.328 kb on + strand, within MPMX19_05378 at 52.329 kb on - strand, within MPMX19_05378 at 52.329 kb on - strand, within MPMX19_05378 at 52.507 kb on + strand at 52.507 kb on + strand at 52.507 kb on + strand at 52.507 kb on + strand at 52.507 kb on + strand at 52.507 kb on + strand at 52.507 kb on + strand at 52.507 kb on + strand at 52.508 kb on - strand at 52.508 kb on - strand at 52.508 kb on - strand at 52.508 kb on - strand at 52.615 kb on - strand at 52.649 kb on - strand at 52.827 kb on + strand at 52.827 kb on + strand at 52.827 kb on + strand at 52.827 kb on + strand at 52.827 kb on + strand at 52.827 kb on + strand at 52.828 kb on - strand at 52.828 kb on - strand at 52.828 kb on - strand at 52.828 kb on - strand at 52.828 kb on - strand at 52.828 kb on - strand at 52.828 kb on - strand at 52.828 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 50,103 + -0.1 50,103 + +0.2 50,103 + -0.4 50,104 - -1.0 50,179 - -1.1 50,202 + MPMX19_05377 0.12 +0.3 50,202 + MPMX19_05377 0.12 +0.3 50,202 + MPMX19_05377 0.12 -0.5 50,208 + MPMX19_05377 0.13 +0.1 50,208 + MPMX19_05377 0.13 -0.4 50,208 + MPMX19_05377 0.13 +0.6 50,208 + MPMX19_05377 0.13 -0.0 50,208 + MPMX19_05377 0.13 -0.3 50,208 + MPMX19_05377 0.13 +0.4 50,208 + MPMX19_05377 0.13 -3.0 50,278 + MPMX19_05377 0.23 -0.5 50,278 + MPMX19_05377 0.23 +0.5 50,278 + MPMX19_05377 0.23 +0.1 50,278 + MPMX19_05377 0.23 +1.1 50,278 + MPMX19_05377 0.23 +0.1 50,278 + MPMX19_05377 0.23 -3.0 50,278 + MPMX19_05377 0.23 -0.1 50,278 + MPMX19_05377 0.23 -0.7 50,278 + MPMX19_05377 0.23 +0.4 50,278 + MPMX19_05377 0.23 -0.6 50,278 + MPMX19_05377 0.23 -1.1 50,278 + MPMX19_05377 0.23 -0.3 50,278 + MPMX19_05377 0.23 -1.3 50,279 - MPMX19_05377 0.23 -0.8 50,279 - MPMX19_05377 0.23 -0.9 50,279 - MPMX19_05377 0.23 -0.2 50,279 - MPMX19_05377 0.23 -0.6 50,279 - MPMX19_05377 0.23 +0.2 50,279 - MPMX19_05377 0.23 +0.4 50,279 - MPMX19_05377 0.23 -0.4 50,279 - MPMX19_05377 0.23 +0.1 50,279 - MPMX19_05377 0.23 -0.1 50,279 - MPMX19_05377 0.23 -1.1 50,279 - MPMX19_05377 0.23 -0.7 50,773 + -2.1 50,773 + -1.1 50,774 - -1.4 50,774 - +0.4 50,774 - +0.4 50,788 + -0.5 50,788 + +1.2 50,788 + -1.0 50,788 + -0.6 50,789 - -1.3 50,789 - +0.0 50,789 - -0.6 50,789 - -1.6 50,789 - -1.1 50,789 - -2.6 50,849 + -0.9 50,850 - +0.4 50,856 + +1.1 50,856 + +1.1 50,856 + +0.9 50,857 - +0.1 50,857 - -0.3 50,929 + -1.3 50,929 + +0.4 50,929 + -0.8 50,929 + +0.9 50,929 + -0.8 50,930 - -0.2 50,930 - -0.2 50,930 - -1.3 50,930 - -0.8 50,930 - -1.3 51,053 + -2.1 51,054 - -0.7 51,138 + +1.4 51,138 + -1.1 51,138 + +0.0 51,138 + +0.9 51,138 + +1.1 51,138 + -1.6 51,138 + -0.0 51,138 + -0.3 51,138 + -1.1 51,138 + +0.6 51,138 + -1.4 51,138 + -2.1 51,138 + -0.4 51,138 + +0.4 51,138 + -0.4 51,138 + +0.1 51,138 + -1.6 51,138 + -0.6 51,138 + -0.1 51,138 + -0.4 51,138 + -1.6 51,138 + +1.0 51,138 + -0.4 51,138 + -0.3 51,139 - -0.3 51,139 - +0.5 51,139 - -0.9 51,139 - +0.1 51,139 - +0.1 51,139 - -0.3 51,139 - -0.8 51,139 - -1.2 51,139 - -2.3 51,139 - -0.6 51,139 - -0.7 51,139 - +0.5 51,139 - -1.9 51,139 - -0.4 51,230 - MPMX19_05378 0.12 +0.2 51,278 + MPMX19_05378 0.15 -0.1 51,278 + MPMX19_05378 0.15 +0.4 51,279 - MPMX19_05378 0.15 +1.1 51,279 - MPMX19_05378 0.15 -1.2 51,462 + MPMX19_05378 0.27 -1.7 51,462 + MPMX19_05378 0.27 +0.1 51,462 + MPMX19_05378 0.27 -0.4 51,462 + MPMX19_05378 0.27 -1.3 51,462 + MPMX19_05378 0.27 -0.1 51,462 + MPMX19_05378 0.27 -1.8 51,462 + MPMX19_05378 0.27 -0.0 51,462 + MPMX19_05378 0.27 -1.9 51,462 + MPMX19_05378 0.27 -0.6 51,463 + MPMX19_05378 0.27 -0.1 51,463 - MPMX19_05378 0.27 -1.6 51,463 - MPMX19_05378 0.27 +1.0 51,463 - MPMX19_05378 0.27 -0.7 51,463 - MPMX19_05378 0.27 +0.1 51,463 - MPMX19_05378 0.27 -0.3 51,463 - MPMX19_05378 0.27 -1.3 51,774 + MPMX19_05378 0.48 -0.1 51,774 + MPMX19_05378 0.48 -0.2 51,774 + MPMX19_05378 0.48 -0.6 51,774 + MPMX19_05378 0.48 -0.4 51,774 + MPMX19_05378 0.48 -0.5 51,775 - MPMX19_05378 0.48 +0.3 51,775 - MPMX19_05378 0.48 +0.3 51,775 - MPMX19_05378 0.48 +0.2 51,807 + MPMX19_05378 0.50 -1.3 51,807 + MPMX19_05378 0.50 +0.1 51,808 - MPMX19_05378 0.50 +0.7 51,808 - MPMX19_05378 0.50 -0.6 51,852 + MPMX19_05378 0.53 -0.8 51,852 + MPMX19_05378 0.53 -0.2 51,852 + MPMX19_05378 0.53 -0.3 51,852 + MPMX19_05378 0.53 +0.1 51,852 + MPMX19_05378 0.53 -0.6 51,852 + MPMX19_05378 0.53 +0.7 51,852 + MPMX19_05378 0.53 -0.3 51,852 + MPMX19_05378 0.53 -1.6 51,852 + MPMX19_05378 0.53 -1.2 51,852 + MPMX19_05378 0.53 +0.2 51,852 + MPMX19_05378 0.53 -0.2 51,852 + MPMX19_05378 0.53 -0.9 51,852 + MPMX19_05378 0.53 -1.1 51,852 + MPMX19_05378 0.53 -1.3 51,853 - MPMX19_05378 0.53 +0.3 51,853 - MPMX19_05378 0.53 -1.1 51,853 - MPMX19_05378 0.53 -0.7 51,853 - MPMX19_05378 0.53 +0.0 51,853 - MPMX19_05378 0.53 -1.9 51,853 - MPMX19_05378 0.53 +0.7 51,853 - MPMX19_05378 0.53 -0.8 51,853 - MPMX19_05378 0.53 +1.2 51,853 - MPMX19_05378 0.53 +0.5 51,853 - MPMX19_05378 0.53 -1.6 51,985 + MPMX19_05378 0.62 -0.7 51,985 + MPMX19_05378 0.62 -0.9 51,985 + MPMX19_05378 0.62 -0.3 51,986 - MPMX19_05378 0.62 -1.3 51,986 - MPMX19_05378 0.62 +0.1 51,986 - MPMX19_05378 0.62 -0.0 51,986 - MPMX19_05378 0.62 -0.7 52,011 + MPMX19_05378 0.64 -1.6 52,011 + MPMX19_05378 0.64 +0.3 52,011 + MPMX19_05378 0.64 -0.1 52,011 + MPMX19_05378 0.64 -1.0 52,012 - MPMX19_05378 0.64 -1.4 52,012 - MPMX19_05378 0.64 -0.4 52,012 - MPMX19_05378 0.64 +0.9 52,012 - MPMX19_05378 0.64 -0.6 52,314 + MPMX19_05378 0.83 -1.5 52,314 + MPMX19_05378 0.83 -0.7 52,314 + MPMX19_05378 0.83 -0.7 52,314 + MPMX19_05378 0.83 -0.9 52,314 + MPMX19_05378 0.83 +0.2 52,314 + MPMX19_05378 0.83 +0.5 52,314 + MPMX19_05378 0.83 -0.9 52,314 + MPMX19_05378 0.83 +0.0 52,314 + MPMX19_05378 0.83 +0.7 52,314 + MPMX19_05378 0.83 +0.1 52,314 + MPMX19_05378 0.83 -0.6 52,314 + MPMX19_05378 0.83 -1.7 52,314 + MPMX19_05378 0.83 -0.3 52,314 + MPMX19_05378 0.83 -0.7 52,314 + MPMX19_05378 0.83 +0.4 52,314 + MPMX19_05378 0.83 -1.6 52,314 + MPMX19_05378 0.83 +0.7 52,315 - MPMX19_05378 0.84 -0.8 52,315 - MPMX19_05378 0.84 +0.8 52,315 - MPMX19_05378 0.84 +0.1 52,315 - MPMX19_05378 0.84 -1.4 52,315 - MPMX19_05378 0.84 -0.3 52,315 - MPMX19_05378 0.84 -0.4 52,315 - MPMX19_05378 0.84 -0.1 52,315 - MPMX19_05378 0.84 -0.3 52,315 - MPMX19_05378 0.84 -0.9 52,315 - MPMX19_05378 0.84 -1.4 52,315 - MPMX19_05378 0.84 +1.6 52,315 - MPMX19_05378 0.84 +0.5 52,315 - MPMX19_05378 0.84 -0.6 52,315 - MPMX19_05378 0.84 -0.9 52,315 - MPMX19_05378 0.84 -0.3 52,315 - MPMX19_05378 0.84 +0.7 52,315 - MPMX19_05378 0.84 -0.3 52,315 - MPMX19_05378 0.84 -0.9 52,315 - MPMX19_05378 0.84 +0.0 52,315 - MPMX19_05378 0.84 -0.1 52,328 + MPMX19_05378 0.84 -1.7 52,329 - MPMX19_05378 0.84 -0.3 52,329 - MPMX19_05378 0.84 -0.3 52,507 + -0.0 52,507 + -1.8 52,507 + -2.3 52,507 + -1.9 52,507 + -0.7 52,507 + +1.0 52,507 + +0.4 52,507 + -1.0 52,508 - -0.1 52,508 - +0.0 52,508 - -2.1 52,508 - -0.4 52,615 - -1.4 52,649 - -0.6 52,827 + -0.3 52,827 + +0.1 52,827 + +1.0 52,827 + -1.2 52,827 + -0.9 52,827 + -1.4 52,828 - -0.4 52,828 - -0.4 52,828 - -0.6 52,828 - +0.7 52,828 - -0.1 52,828 - +0.5 52,828 - +0.4 52,828 - +0.6
Or see this region's nucleotide sequence