Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05370

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05367 and MPMX19_05368 are separated by 368 nucleotidesMPMX19_05368 and MPMX19_05369 are separated by 94 nucleotidesMPMX19_05369 and MPMX19_05370 are separated by 137 nucleotidesMPMX19_05370 and MPMX19_05371 are separated by 85 nucleotidesMPMX19_05371 and MPMX19_05372 are separated by 4 nucleotides MPMX19_05367: MPMX19_05367 - hypothetical protein, at 41,954 to 42,388 _05367 MPMX19_05368: MPMX19_05368 - Copper chaperone CopZ, at 42,757 to 42,957 _05368 MPMX19_05369: MPMX19_05369 - hypothetical protein, at 43,052 to 43,216 _05369 MPMX19_05370: MPMX19_05370 - hypothetical protein, at 43,354 to 43,962 _05370 MPMX19_05371: MPMX19_05371 - hypothetical protein, at 44,048 to 44,941 _05371 MPMX19_05372: MPMX19_05372 - Cell division ATP-binding protein FtsE, at 44,946 to 45,683 _05372 Position (kb) 43 44Strain fitness (log2 ratio) -3 -2 -1 0 1at 42.414 kb on + strandat 42.414 kb on + strandat 42.415 kb on - strandat 42.451 kb on - strandat 42.463 kb on + strandat 42.463 kb on + strandat 42.463 kb on + strandat 42.464 kb on - strandat 42.464 kb on - strandat 42.464 kb on - strandat 42.464 kb on - strandat 42.935 kb on - strand, within MPMX19_05368at 42.941 kb on + strandat 42.941 kb on + strandat 42.941 kb on + strandat 42.941 kb on + strandat 42.941 kb on + strandat 42.941 kb on + strandat 42.941 kb on + strandat 42.941 kb on + strandat 42.941 kb on + strandat 42.941 kb on + strandat 42.941 kb on + strandat 42.942 kb on - strandat 42.942 kb on - strandat 42.942 kb on - strandat 42.942 kb on - strandat 42.942 kb on - strandat 42.942 kb on - strandat 42.942 kb on - strandat 42.942 kb on - strandat 42.942 kb on - strandat 42.942 kb on - strandat 42.942 kb on - strandat 42.942 kb on - strandat 43.053 kb on + strandat 43.053 kb on + strandat 43.053 kb on + strandat 43.053 kb on + strandat 43.054 kb on - strandat 43.054 kb on - strandat 43.054 kb on - strandat 43.054 kb on - strandat 43.054 kb on - strandat 43.098 kb on + strand, within MPMX19_05369at 43.098 kb on + strand, within MPMX19_05369at 43.098 kb on + strand, within MPMX19_05369at 43.099 kb on - strand, within MPMX19_05369at 43.285 kb on + strandat 43.285 kb on + strandat 43.285 kb on + strandat 43.286 kb on - strandat 43.286 kb on - strandat 43.412 kb on + strandat 43.412 kb on + strandat 43.412 kb on + strandat 43.412 kb on + strandat 43.412 kb on + strandat 43.413 kb on - strandat 43.413 kb on - strandat 43.413 kb on - strandat 43.413 kb on - strandat 43.413 kb on - strandat 43.553 kb on + strand, within MPMX19_05370at 43.553 kb on + strand, within MPMX19_05370at 43.553 kb on + strand, within MPMX19_05370at 43.553 kb on + strand, within MPMX19_05370at 43.553 kb on + strand, within MPMX19_05370at 43.553 kb on + strand, within MPMX19_05370at 43.553 kb on + strand, within MPMX19_05370at 43.553 kb on + strand, within MPMX19_05370at 43.553 kb on + strand, within MPMX19_05370at 43.553 kb on + strand, within MPMX19_05370at 43.553 kb on + strand, within MPMX19_05370at 43.553 kb on + strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.554 kb on - strand, within MPMX19_05370at 43.616 kb on + strand, within MPMX19_05370at 43.616 kb on + strand, within MPMX19_05370at 43.616 kb on + strand, within MPMX19_05370at 43.616 kb on + strand, within MPMX19_05370at 43.616 kb on + strand, within MPMX19_05370at 43.617 kb on - strand, within MPMX19_05370at 43.617 kb on - strand, within MPMX19_05370at 43.617 kb on - strand, within MPMX19_05370at 43.617 kb on - strand, within MPMX19_05370at 43.617 kb on - strand, within MPMX19_05370at 43.617 kb on - strand, within MPMX19_05370at 43.617 kb on - strand, within MPMX19_05370at 43.617 kb on - strand, within MPMX19_05370at 43.617 kb on - strand, within MPMX19_05370at 43.617 kb on - strand, within MPMX19_05370at 43.617 kb on - strand, within MPMX19_05370at 43.646 kb on + strand, within MPMX19_05370at 43.646 kb on + strand, within MPMX19_05370at 43.647 kb on - strand, within MPMX19_05370at 43.647 kb on - strand, within MPMX19_05370at 43.647 kb on - strand, within MPMX19_05370at 43.727 kb on + strand, within MPMX19_05370at 43.727 kb on + strand, within MPMX19_05370at 43.727 kb on + strand, within MPMX19_05370at 43.727 kb on + strand, within MPMX19_05370at 43.727 kb on + strand, within MPMX19_05370at 43.727 kb on + strand, within MPMX19_05370at 43.727 kb on + strand, within MPMX19_05370at 43.728 kb on - strand, within MPMX19_05370at 43.728 kb on - strand, within MPMX19_05370at 43.728 kb on - strand, within MPMX19_05370at 43.728 kb on - strand, within MPMX19_05370at 43.884 kb on - strand, within MPMX19_05370at 43.884 kb on - strand, within MPMX19_05370at 43.884 kb on - strand, within MPMX19_05370at 43.884 kb on - strand, within MPMX19_05370at 44.102 kb on + strandat 44.102 kb on + strandat 44.102 kb on + strandat 44.102 kb on + strandat 44.102 kb on + strandat 44.103 kb on - strandat 44.103 kb on - strandat 44.103 kb on - strandat 44.214 kb on + strand, within MPMX19_05371at 44.214 kb on + strand, within MPMX19_05371at 44.214 kb on + strand, within MPMX19_05371at 44.214 kb on + strand, within MPMX19_05371at 44.215 kb on - strand, within MPMX19_05371at 44.215 kb on - strand, within MPMX19_05371at 44.215 kb on - strand, within MPMX19_05371at 44.215 kb on - strand, within MPMX19_05371at 44.215 kb on - strand, within MPMX19_05371at 44.215 kb on - strand, within MPMX19_05371at 44.215 kb on - strand, within MPMX19_05371at 44.215 kb on - strand, within MPMX19_05371at 44.215 kb on - strand, within MPMX19_05371at 44.301 kb on + strand, within MPMX19_05371at 44.301 kb on + strand, within MPMX19_05371at 44.301 kb on + strand, within MPMX19_05371at 44.301 kb on + strand, within MPMX19_05371at 44.301 kb on + strand, within MPMX19_05371at 44.301 kb on + strand, within MPMX19_05371at 44.301 kb on + strand, within MPMX19_05371at 44.301 kb on + strand, within MPMX19_05371at 44.302 kb on - strand, within MPMX19_05371at 44.302 kb on - strand, within MPMX19_05371at 44.302 kb on - strand, within MPMX19_05371at 44.302 kb on - strand, within MPMX19_05371at 44.302 kb on - strand, within MPMX19_05371at 44.302 kb on - strand, within MPMX19_05371at 44.947 kb on + strandat 44.948 kb on - strandat 44.948 kb on - strandat 44.948 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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42,414 + -0.2
42,414 + -1.4
42,415 - -2.1
42,451 - -1.2
42,463 + -0.2
42,463 + -1.2
42,463 + +1.1
42,464 - -0.7
42,464 - +0.6
42,464 - -2.1
42,464 - -1.2
42,935 - MPMX19_05368 0.89 -1.0
42,941 + -0.4
42,941 + +0.4
42,941 + +0.6
42,941 + -0.8
42,941 + -0.8
42,941 + -0.9
42,941 + -1.1
42,941 + -0.3
42,941 + -2.1
42,941 + -2.1
42,941 + -0.8
42,942 - -0.9
42,942 - -2.0
42,942 - +0.3
42,942 - +0.3
42,942 - +1.3
42,942 - +0.5
42,942 - -0.3
42,942 - +1.1
42,942 - -1.9
42,942 - -1.6
42,942 - -1.8
42,942 - -1.3
43,053 + -2.0
43,053 + -1.3
43,053 + -0.1
43,053 + -0.8
43,054 - -0.8
43,054 - +0.3
43,054 - -1.1
43,054 - +0.1
43,054 - +0.7
43,098 + MPMX19_05369 0.28 +0.1
43,098 + MPMX19_05369 0.28 +0.0
43,098 + MPMX19_05369 0.28 -0.4
43,099 - MPMX19_05369 0.28 +0.6
43,285 + -0.3
43,285 + +1.0
43,285 + -0.3
43,286 - -0.6
43,286 - +0.7
43,412 + +0.2
43,412 + -1.6
43,412 + +0.3
43,412 + -2.0
43,412 + -0.9
43,413 - -0.3
43,413 - +1.1
43,413 - -0.7
43,413 - +1.2
43,413 - -0.3
43,553 + MPMX19_05370 0.33 -0.5
43,553 + MPMX19_05370 0.33 -1.6
43,553 + MPMX19_05370 0.33 -0.5
43,553 + MPMX19_05370 0.33 +1.0
43,553 + MPMX19_05370 0.33 -1.2
43,553 + MPMX19_05370 0.33 -0.8
43,553 + MPMX19_05370 0.33 -0.4
43,553 + MPMX19_05370 0.33 -0.9
43,553 + MPMX19_05370 0.33 -0.2
43,553 + MPMX19_05370 0.33 -0.3
43,553 + MPMX19_05370 0.33 +0.1
43,553 + MPMX19_05370 0.33 -1.2
43,554 - MPMX19_05370 0.33 +0.3
43,554 - MPMX19_05370 0.33 +0.4
43,554 - MPMX19_05370 0.33 -0.0
43,554 - MPMX19_05370 0.33 -1.3
43,554 - MPMX19_05370 0.33 +0.1
43,554 - MPMX19_05370 0.33 -0.5
43,554 - MPMX19_05370 0.33 -2.9
43,554 - MPMX19_05370 0.33 -1.0
43,554 - MPMX19_05370 0.33 -0.9
43,554 - MPMX19_05370 0.33 +0.3
43,554 - MPMX19_05370 0.33 +0.4
43,554 - MPMX19_05370 0.33 -1.2
43,554 - MPMX19_05370 0.33 +0.3
43,554 - MPMX19_05370 0.33 -0.2
43,554 - MPMX19_05370 0.33 +0.8
43,554 - MPMX19_05370 0.33 -0.6
43,554 - MPMX19_05370 0.33 -0.2
43,554 - MPMX19_05370 0.33 -1.9
43,554 - MPMX19_05370 0.33 -0.7
43,554 - MPMX19_05370 0.33 -0.8
43,554 - MPMX19_05370 0.33 -0.5
43,554 - MPMX19_05370 0.33 -0.3
43,554 - MPMX19_05370 0.33 -0.9
43,554 - MPMX19_05370 0.33 -0.3
43,554 - MPMX19_05370 0.33 -0.2
43,554 - MPMX19_05370 0.33 -2.1
43,554 - MPMX19_05370 0.33 +0.0
43,616 + MPMX19_05370 0.43 -0.1
43,616 + MPMX19_05370 0.43 -0.9
43,616 + MPMX19_05370 0.43 -0.8
43,616 + MPMX19_05370 0.43 +0.5
43,616 + MPMX19_05370 0.43 +0.2
43,617 - MPMX19_05370 0.43 -0.5
43,617 - MPMX19_05370 0.43 -0.1
43,617 - MPMX19_05370 0.43 -0.7
43,617 - MPMX19_05370 0.43 +0.7
43,617 - MPMX19_05370 0.43 +0.2
43,617 - MPMX19_05370 0.43 +0.1
43,617 - MPMX19_05370 0.43 -0.0
43,617 - MPMX19_05370 0.43 +0.6
43,617 - MPMX19_05370 0.43 -2.6
43,617 - MPMX19_05370 0.43 -0.5
43,617 - MPMX19_05370 0.43 -0.7
43,646 + MPMX19_05370 0.48 -0.0
43,646 + MPMX19_05370 0.48 -0.0
43,647 - MPMX19_05370 0.48 +0.0
43,647 - MPMX19_05370 0.48 -1.0
43,647 - MPMX19_05370 0.48 +0.6
43,727 + MPMX19_05370 0.61 -0.4
43,727 + MPMX19_05370 0.61 -2.0
43,727 + MPMX19_05370 0.61 -0.7
43,727 + MPMX19_05370 0.61 +0.4
43,727 + MPMX19_05370 0.61 -0.7
43,727 + MPMX19_05370 0.61 -0.1
43,727 + MPMX19_05370 0.61 +0.3
43,728 - MPMX19_05370 0.61 -0.5
43,728 - MPMX19_05370 0.61 -0.9
43,728 - MPMX19_05370 0.61 -0.6
43,728 - MPMX19_05370 0.61 -0.7
43,884 - MPMX19_05370 0.87 -0.8
43,884 - MPMX19_05370 0.87 -1.3
43,884 - MPMX19_05370 0.87 -0.8
43,884 - MPMX19_05370 0.87 -1.9
44,102 + +0.4
44,102 + +0.4
44,102 + -1.3
44,102 + -1.6
44,102 + +0.0
44,103 - -0.3
44,103 - +0.1
44,103 - -0.7
44,214 + MPMX19_05371 0.19 -1.3
44,214 + MPMX19_05371 0.19 -1.9
44,214 + MPMX19_05371 0.19 -0.5
44,214 + MPMX19_05371 0.19 -1.0
44,215 - MPMX19_05371 0.19 -0.4
44,215 - MPMX19_05371 0.19 -0.6
44,215 - MPMX19_05371 0.19 -1.4
44,215 - MPMX19_05371 0.19 +0.7
44,215 - MPMX19_05371 0.19 +0.7
44,215 - MPMX19_05371 0.19 -1.1
44,215 - MPMX19_05371 0.19 -0.3
44,215 - MPMX19_05371 0.19 -1.2
44,215 - MPMX19_05371 0.19 -0.1
44,301 + MPMX19_05371 0.28 -1.6
44,301 + MPMX19_05371 0.28 +0.6
44,301 + MPMX19_05371 0.28 -1.0
44,301 + MPMX19_05371 0.28 -0.6
44,301 + MPMX19_05371 0.28 -1.2
44,301 + MPMX19_05371 0.28 -1.5
44,301 + MPMX19_05371 0.28 -0.4
44,301 + MPMX19_05371 0.28 -0.4
44,302 - MPMX19_05371 0.28 -1.1
44,302 - MPMX19_05371 0.28 +1.1
44,302 - MPMX19_05371 0.28 -0.6
44,302 - MPMX19_05371 0.28 +0.6
44,302 - MPMX19_05371 0.28 -0.2
44,302 - MPMX19_05371 0.28 +1.3
44,947 + -0.3
44,948 - -0.3
44,948 - -0.4
44,948 - -0.1

Or see this region's nucleotide sequence