Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05359

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05357 and MPMX19_05358 are separated by 455 nucleotidesMPMX19_05358 and MPMX19_05359 are separated by 117 nucleotidesMPMX19_05359 and MPMX19_05360 overlap by 4 nucleotidesMPMX19_05360 and MPMX19_05361 are separated by 77 nucleotides MPMX19_05357: MPMX19_05357 - hypothetical protein, at 31,034 to 34,093 _05357 MPMX19_05358: MPMX19_05358 - hypothetical protein, at 34,549 to 34,746 _05358 MPMX19_05359: MPMX19_05359 - hypothetical protein, at 34,864 to 36,135 _05359 MPMX19_05360: MPMX19_05360 - hypothetical protein, at 36,132 to 36,884 _05360 MPMX19_05361: MPMX19_05361 - CRP-like cAMP-activated global transcriptional regulator, at 36,962 to 37,672 _05361 Position (kb) 34 35 36 37Strain fitness (log2 ratio) -2 -1 0 1 2at 33.885 kb on + strandat 33.886 kb on - strandat 33.886 kb on - strandat 33.915 kb on - strandat 33.915 kb on - strandat 33.936 kb on + strandat 34.025 kb on - strandat 34.059 kb on + strandat 34.103 kb on - strandat 34.127 kb on - strandat 34.127 kb on - strandat 34.151 kb on + strandat 34.200 kb on + strandat 34.200 kb on + strandat 34.200 kb on + strandat 34.200 kb on + strandat 34.201 kb on - strandat 34.229 kb on + strandat 34.229 kb on + strandat 34.230 kb on - strandat 34.230 kb on - strandat 34.230 kb on - strandat 34.230 kb on - strandat 34.230 kb on - strandat 34.235 kb on + strandat 34.235 kb on + strandat 34.235 kb on + strandat 34.235 kb on + strandat 34.235 kb on + strandat 34.235 kb on + strandat 34.236 kb on - strandat 34.236 kb on - strandat 34.370 kb on + strandat 34.371 kb on - strandat 34.371 kb on - strandat 34.373 kb on + strandat 34.374 kb on - strandat 34.374 kb on - strandat 34.374 kb on - strandat 34.374 kb on - strandat 34.505 kb on + strandat 34.506 kb on - strandat 34.533 kb on + strandat 34.533 kb on + strandat 34.533 kb on + strandat 34.533 kb on + strandat 34.534 kb on - strandat 34.603 kb on + strand, within MPMX19_05358at 34.603 kb on + strand, within MPMX19_05358at 34.604 kb on - strand, within MPMX19_05358at 34.885 kb on - strandat 34.920 kb on + strandat 34.920 kb on + strandat 34.920 kb on + strandat 34.920 kb on + strandat 34.920 kb on + strandat 34.921 kb on - strandat 34.921 kb on - strandat 34.921 kb on - strandat 35.152 kb on + strand, within MPMX19_05359at 35.152 kb on + strand, within MPMX19_05359at 35.152 kb on + strand, within MPMX19_05359at 35.152 kb on + strand, within MPMX19_05359at 35.152 kb on + strand, within MPMX19_05359at 35.153 kb on - strand, within MPMX19_05359at 35.153 kb on - strand, within MPMX19_05359at 35.153 kb on - strand, within MPMX19_05359at 35.153 kb on - strand, within MPMX19_05359at 35.153 kb on - strand, within MPMX19_05359at 35.153 kb on - strand, within MPMX19_05359at 35.153 kb on - strand, within MPMX19_05359at 35.153 kb on - strand, within MPMX19_05359at 35.153 kb on - strand, within MPMX19_05359at 35.153 kb on - strand, within MPMX19_05359at 35.570 kb on + strand, within MPMX19_05359at 35.570 kb on + strand, within MPMX19_05359at 35.570 kb on + strand, within MPMX19_05359at 35.570 kb on + strand, within MPMX19_05359at 35.570 kb on + strand, within MPMX19_05359at 35.570 kb on + strand, within MPMX19_05359at 35.570 kb on + strand, within MPMX19_05359at 35.571 kb on - strand, within MPMX19_05359at 35.571 kb on - strand, within MPMX19_05359at 35.571 kb on - strand, within MPMX19_05359at 35.571 kb on - strand, within MPMX19_05359at 35.571 kb on - strand, within MPMX19_05359at 35.815 kb on + strand, within MPMX19_05359at 35.815 kb on + strand, within MPMX19_05359at 35.815 kb on + strand, within MPMX19_05359at 35.816 kb on - strand, within MPMX19_05359at 35.816 kb on - strand, within MPMX19_05359at 35.842 kb on + strand, within MPMX19_05359at 35.842 kb on + strand, within MPMX19_05359at 35.842 kb on + strand, within MPMX19_05359at 35.842 kb on + strand, within MPMX19_05359at 35.842 kb on + strand, within MPMX19_05359at 35.843 kb on - strand, within MPMX19_05359at 35.843 kb on - strand, within MPMX19_05359at 35.843 kb on - strand, within MPMX19_05359at 35.843 kb on - strand, within MPMX19_05359at 35.843 kb on - strand, within MPMX19_05359at 36.073 kb on + strandat 36.073 kb on + strandat 36.073 kb on + strandat 36.073 kb on + strandat 36.073 kb on + strandat 36.073 kb on + strandat 36.073 kb on + strandat 36.073 kb on + strandat 36.074 kb on - strandat 36.144 kb on + strandat 36.144 kb on + strandat 36.144 kb on + strandat 36.144 kb on + strandat 36.144 kb on + strandat 36.144 kb on + strandat 36.144 kb on + strandat 36.144 kb on + strandat 36.144 kb on + strandat 36.144 kb on + strandat 36.144 kb on + strandat 36.145 kb on - strandat 36.145 kb on - strandat 36.145 kb on - strandat 36.145 kb on - strandat 36.145 kb on - strandat 36.145 kb on - strandat 36.204 kb on + strandat 36.204 kb on + strandat 36.204 kb on + strandat 36.204 kb on + strandat 36.204 kb on + strandat 36.204 kb on + strandat 36.204 kb on + strandat 36.205 kb on - strandat 36.205 kb on - strandat 36.205 kb on - strandat 36.205 kb on - strandat 36.205 kb on - strandat 36.205 kb on - strandat 36.205 kb on - strandat 36.205 kb on - strandat 36.205 kb on - strandat 36.325 kb on - strand, within MPMX19_05360at 36.325 kb on - strand, within MPMX19_05360at 36.341 kb on + strand, within MPMX19_05360at 36.342 kb on - strand, within MPMX19_05360at 36.342 kb on - strand, within MPMX19_05360at 36.393 kb on + strand, within MPMX19_05360at 36.394 kb on - strand, within MPMX19_05360at 36.394 kb on - strand, within MPMX19_05360at 36.394 kb on - strand, within MPMX19_05360at 36.394 kb on - strand, within MPMX19_05360at 36.394 kb on - strand, within MPMX19_05360at 36.394 kb on - strand, within MPMX19_05360at 36.501 kb on + strand, within MPMX19_05360at 36.501 kb on + strand, within MPMX19_05360at 36.501 kb on + strand, within MPMX19_05360at 36.501 kb on + strand, within MPMX19_05360at 36.501 kb on + strand, within MPMX19_05360at 36.501 kb on + strand, within MPMX19_05360at 36.502 kb on - strand, within MPMX19_05360at 36.502 kb on - strand, within MPMX19_05360at 36.883 kb on - strandat 36.883 kb on - strandat 36.883 kb on - strandat 36.883 kb on - strandat 36.883 kb on - strandat 36.898 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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33,885 + +1.5
33,886 - +0.7
33,886 - -0.3
33,915 - -0.3
33,915 - -1.7
33,936 + -0.5
34,025 - -0.7
34,059 + -1.5
34,103 - +1.0
34,127 - -0.4
34,127 - -0.4
34,151 + -0.3
34,200 + +0.7
34,200 + -0.2
34,200 + +1.1
34,200 + +0.8
34,201 - +0.0
34,229 + -1.0
34,229 + -0.1
34,230 - -1.4
34,230 - -1.7
34,230 - -1.0
34,230 - -2.3
34,230 - +0.3
34,235 + -0.9
34,235 + -1.2
34,235 + -1.2
34,235 + -0.6
34,235 + -0.6
34,235 + -1.0
34,236 - -0.8
34,236 - +0.7
34,370 + +0.5
34,371 - -0.5
34,371 - -0.3
34,373 + -1.5
34,374 - -2.0
34,374 - +1.3
34,374 - -0.9
34,374 - -2.0
34,505 + -0.3
34,506 - -0.6
34,533 + +0.3
34,533 + +0.1
34,533 + -0.2
34,533 + +0.9
34,534 - -0.9
34,603 + MPMX19_05358 0.27 -1.0
34,603 + MPMX19_05358 0.27 -2.2
34,604 - MPMX19_05358 0.28 +0.6
34,885 - -1.2
34,920 + +0.4
34,920 + +0.0
34,920 + -0.4
34,920 + +0.7
34,920 + -0.9
34,921 - +0.9
34,921 - +0.9
34,921 - +0.1
35,152 + MPMX19_05359 0.23 -1.2
35,152 + MPMX19_05359 0.23 -0.9
35,152 + MPMX19_05359 0.23 -1.7
35,152 + MPMX19_05359 0.23 -0.6
35,152 + MPMX19_05359 0.23 -0.1
35,153 - MPMX19_05359 0.23 +1.1
35,153 - MPMX19_05359 0.23 -0.9
35,153 - MPMX19_05359 0.23 -1.4
35,153 - MPMX19_05359 0.23 -1.9
35,153 - MPMX19_05359 0.23 -1.3
35,153 - MPMX19_05359 0.23 -0.2
35,153 - MPMX19_05359 0.23 +1.4
35,153 - MPMX19_05359 0.23 -1.0
35,153 - MPMX19_05359 0.23 -1.0
35,153 - MPMX19_05359 0.23 -0.1
35,570 + MPMX19_05359 0.56 -0.3
35,570 + MPMX19_05359 0.56 -0.8
35,570 + MPMX19_05359 0.56 -0.0
35,570 + MPMX19_05359 0.56 -1.2
35,570 + MPMX19_05359 0.56 -2.0
35,570 + MPMX19_05359 0.56 -1.3
35,570 + MPMX19_05359 0.56 -0.1
35,571 - MPMX19_05359 0.56 +1.3
35,571 - MPMX19_05359 0.56 +0.1
35,571 - MPMX19_05359 0.56 -0.9
35,571 - MPMX19_05359 0.56 -0.2
35,571 - MPMX19_05359 0.56 -0.6
35,815 + MPMX19_05359 0.75 -1.4
35,815 + MPMX19_05359 0.75 -0.7
35,815 + MPMX19_05359 0.75 -1.7
35,816 - MPMX19_05359 0.75 -1.4
35,816 - MPMX19_05359 0.75 -0.6
35,842 + MPMX19_05359 0.77 -0.7
35,842 + MPMX19_05359 0.77 -0.2
35,842 + MPMX19_05359 0.77 +0.3
35,842 + MPMX19_05359 0.77 -1.4
35,842 + MPMX19_05359 0.77 -0.3
35,843 - MPMX19_05359 0.77 -1.9
35,843 - MPMX19_05359 0.77 -0.3
35,843 - MPMX19_05359 0.77 -0.6
35,843 - MPMX19_05359 0.77 -1.3
35,843 - MPMX19_05359 0.77 +0.1
36,073 + -0.6
36,073 + -0.2
36,073 + -0.6
36,073 + -0.8
36,073 + -1.6
36,073 + +0.5
36,073 + -0.6
36,073 + -0.4
36,074 - -0.3
36,144 + +0.3
36,144 + -0.4
36,144 + +0.5
36,144 + -1.1
36,144 + -0.0
36,144 + +0.3
36,144 + -2.1
36,144 + +0.3
36,144 + -1.3
36,144 + -0.8
36,144 + +0.6
36,145 - +0.4
36,145 - -1.6
36,145 - +0.7
36,145 - -2.2
36,145 - -0.3
36,145 - -1.7
36,204 + +0.2
36,204 + +0.5
36,204 + -0.4
36,204 + +1.4
36,204 + -1.4
36,204 + -0.2
36,204 + -1.3
36,205 - +1.7
36,205 - -1.0
36,205 - +1.0
36,205 - +0.5
36,205 - +2.0
36,205 - -0.9
36,205 - -0.4
36,205 - -0.4
36,205 - -0.5
36,325 - MPMX19_05360 0.26 +0.5
36,325 - MPMX19_05360 0.26 +0.7
36,341 + MPMX19_05360 0.28 +0.1
36,342 - MPMX19_05360 0.28 +0.1
36,342 - MPMX19_05360 0.28 -0.7
36,393 + MPMX19_05360 0.35 -0.6
36,394 - MPMX19_05360 0.35 -0.4
36,394 - MPMX19_05360 0.35 +0.6
36,394 - MPMX19_05360 0.35 -0.5
36,394 - MPMX19_05360 0.35 -0.5
36,394 - MPMX19_05360 0.35 -0.7
36,394 - MPMX19_05360 0.35 +1.0
36,501 + MPMX19_05360 0.49 +0.4
36,501 + MPMX19_05360 0.49 -0.2
36,501 + MPMX19_05360 0.49 +0.6
36,501 + MPMX19_05360 0.49 -2.1
36,501 + MPMX19_05360 0.49 -0.3
36,501 + MPMX19_05360 0.49 -1.2
36,502 - MPMX19_05360 0.49 -0.8
36,502 - MPMX19_05360 0.49 +2.1
36,883 - -1.6
36,883 - +1.7
36,883 - +0.1
36,883 - -2.1
36,883 - -0.2
36,898 - -0.8

Or see this region's nucleotide sequence