Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05332

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05332 and MPMX19_05333 are separated by 119 nucleotides MPMX19_05332: MPMX19_05332 - HTH-type transcriptional regulator GntR, at 85 to 1,065 _05332 MPMX19_05333: MPMX19_05333 - Thymidine phosphorylase, at 1,185 to 2,675 _05333 Position (kb) 0 1 2Strain fitness (log2 ratio) -3 -2 -1 0 1at 0.208 kb on + strand, within MPMX19_05332at 0.208 kb on + strand, within MPMX19_05332at 0.208 kb on + strand, within MPMX19_05332at 0.208 kb on + strand, within MPMX19_05332at 0.208 kb on + strand, within MPMX19_05332at 0.208 kb on + strand, within MPMX19_05332at 0.208 kb on + strand, within MPMX19_05332at 0.209 kb on - strand, within MPMX19_05332at 0.209 kb on - strand, within MPMX19_05332at 0.209 kb on - strand, within MPMX19_05332at 0.209 kb on - strand, within MPMX19_05332at 0.209 kb on - strand, within MPMX19_05332at 0.371 kb on - strand, within MPMX19_05332at 0.371 kb on - strand, within MPMX19_05332at 0.406 kb on + strand, within MPMX19_05332at 0.406 kb on + strand, within MPMX19_05332at 0.406 kb on + strand, within MPMX19_05332at 0.406 kb on + strand, within MPMX19_05332at 0.406 kb on + strand, within MPMX19_05332at 0.406 kb on + strand, within MPMX19_05332at 0.406 kb on + strand, within MPMX19_05332at 0.406 kb on + strand, within MPMX19_05332at 0.407 kb on - strand, within MPMX19_05332at 0.407 kb on - strand, within MPMX19_05332at 0.407 kb on - strand, within MPMX19_05332at 0.407 kb on - strand, within MPMX19_05332at 0.472 kb on + strand, within MPMX19_05332at 0.472 kb on + strand, within MPMX19_05332at 0.472 kb on + strand, within MPMX19_05332at 0.472 kb on + strand, within MPMX19_05332at 0.473 kb on - strand, within MPMX19_05332at 0.473 kb on - strand, within MPMX19_05332at 0.473 kb on - strand, within MPMX19_05332at 0.473 kb on - strand, within MPMX19_05332at 0.473 kb on - strand, within MPMX19_05332at 0.665 kb on - strand, within MPMX19_05332at 0.694 kb on + strand, within MPMX19_05332at 0.694 kb on + strand, within MPMX19_05332at 0.694 kb on + strand, within MPMX19_05332at 0.695 kb on - strand, within MPMX19_05332at 0.695 kb on - strand, within MPMX19_05332at 0.695 kb on - strand, within MPMX19_05332at 0.953 kb on - strand, within MPMX19_05332at 1.073 kb on + strandat 1.073 kb on + strandat 1.073 kb on + strandat 1.074 kb on - strandat 1.074 kb on - strandat 1.074 kb on - strandat 1.074 kb on - strandat 1.074 kb on - strandat 1.074 kb on - strandat 1.074 kb on - strandat 1.074 kb on - strandat 1.116 kb on + strandat 1.117 kb on - strandat 1.117 kb on - strandat 1.173 kb on + strandat 1.173 kb on + strandat 1.173 kb on + strandat 1.174 kb on - strandat 1.174 kb on - strandat 1.174 kb on - strandat 1.174 kb on - strandat 1.174 kb on - strandat 1.210 kb on + strandat 1.210 kb on + strandat 1.260 kb on + strandat 1.260 kb on + strandat 1.261 kb on - strandat 1.548 kb on + strand, within MPMX19_05333at 1.548 kb on + strand, within MPMX19_05333at 1.549 kb on - strand, within MPMX19_05333at 1.673 kb on + strand, within MPMX19_05333

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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208 + MPMX19_05332 0.13 +0.4
208 + MPMX19_05332 0.13 -0.1
208 + MPMX19_05332 0.13 -0.6
208 + MPMX19_05332 0.13 -0.3
208 + MPMX19_05332 0.13 -0.1
208 + MPMX19_05332 0.13 +0.1
208 + MPMX19_05332 0.13 +1.0
209 - MPMX19_05332 0.13 +0.9
209 - MPMX19_05332 0.13 +0.6
209 - MPMX19_05332 0.13 -0.4
209 - MPMX19_05332 0.13 +0.9
209 - MPMX19_05332 0.13 -0.9
371 - MPMX19_05332 0.29 -1.6
371 - MPMX19_05332 0.29 -1.4
406 + MPMX19_05332 0.33 -0.6
406 + MPMX19_05332 0.33 +0.8
406 + MPMX19_05332 0.33 +0.1
406 + MPMX19_05332 0.33 -0.9
406 + MPMX19_05332 0.33 -0.6
406 + MPMX19_05332 0.33 -0.5
406 + MPMX19_05332 0.33 -0.2
406 + MPMX19_05332 0.33 -1.1
407 - MPMX19_05332 0.33 -2.8
407 - MPMX19_05332 0.33 +0.4
407 - MPMX19_05332 0.33 +1.3
407 - MPMX19_05332 0.33 -0.5
472 + MPMX19_05332 0.39 -0.4
472 + MPMX19_05332 0.39 +0.6
472 + MPMX19_05332 0.39 -1.1
472 + MPMX19_05332 0.39 +1.1
473 - MPMX19_05332 0.40 +0.3
473 - MPMX19_05332 0.40 +0.6
473 - MPMX19_05332 0.40 -1.9
473 - MPMX19_05332 0.40 +0.0
473 - MPMX19_05332 0.40 -1.0
665 - MPMX19_05332 0.59 -1.1
694 + MPMX19_05332 0.62 +1.5
694 + MPMX19_05332 0.62 +1.3
694 + MPMX19_05332 0.62 -0.6
695 - MPMX19_05332 0.62 -0.1
695 - MPMX19_05332 0.62 -0.6
695 - MPMX19_05332 0.62 -0.8
953 - MPMX19_05332 0.88 -0.6
1,073 + +1.1
1,073 + -1.1
1,073 + -0.6
1,074 - -0.0
1,074 - +0.4
1,074 - +0.1
1,074 - -0.1
1,074 - +0.7
1,074 - +0.1
1,074 - +0.3
1,074 - +0.1
1,116 + +0.3
1,117 - -0.7
1,117 - -1.3
1,173 + +0.2
1,173 + +0.6
1,173 + -0.0
1,174 - -0.9
1,174 - -1.3
1,174 - -0.2
1,174 - +0.5
1,174 - -0.9
1,210 + -1.7
1,210 + +0.1
1,260 + -1.3
1,260 + -0.8
1,261 - -0.5
1,548 + MPMX19_05333 0.24 +0.9
1,548 + MPMX19_05333 0.24 -0.3
1,549 - MPMX19_05333 0.24 -0.9
1,673 + MPMX19_05333 0.33 -0.0

Or see this region's nucleotide sequence