Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05251

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05250 and MPMX19_05251 are separated by 7 nucleotidesMPMX19_05251 and MPMX19_05252 are separated by 70 nucleotidesMPMX19_05252 and MPMX19_05253 are separated by 28 nucleotides MPMX19_05250: MPMX19_05250 - hypothetical protein, at 779,887 to 781,104 _05250 MPMX19_05251: MPMX19_05251 - hypothetical protein, at 781,112 to 782,035 _05251 MPMX19_05252: MPMX19_05252 - Carbon monoxide dehydrogenase medium chain, at 782,106 to 782,897 _05252 MPMX19_05253: MPMX19_05253 - Carbon monoxide dehydrogenase large chain, at 782,926 to 785,316 _05253 Position (kb) 781 782 783Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 780.162 kb on + strand, within MPMX19_05250at 780.172 kb on + strand, within MPMX19_05250at 780.172 kb on + strand, within MPMX19_05250at 780.172 kb on + strand, within MPMX19_05250at 780.172 kb on + strand, within MPMX19_05250at 780.172 kb on + strand, within MPMX19_05250at 780.172 kb on + strand, within MPMX19_05250at 780.173 kb on - strand, within MPMX19_05250at 780.173 kb on - strand, within MPMX19_05250at 780.173 kb on - strand, within MPMX19_05250at 780.173 kb on - strand, within MPMX19_05250at 780.173 kb on - strand, within MPMX19_05250at 780.173 kb on - strand, within MPMX19_05250at 780.173 kb on - strand, within MPMX19_05250at 780.313 kb on + strand, within MPMX19_05250at 780.313 kb on + strand, within MPMX19_05250at 780.313 kb on + strand, within MPMX19_05250at 780.313 kb on + strand, within MPMX19_05250at 780.313 kb on + strand, within MPMX19_05250at 780.314 kb on - strand, within MPMX19_05250at 780.314 kb on - strand, within MPMX19_05250at 780.314 kb on - strand, within MPMX19_05250at 780.314 kb on - strand, within MPMX19_05250at 780.314 kb on - strand, within MPMX19_05250at 780.416 kb on + strand, within MPMX19_05250at 780.417 kb on - strand, within MPMX19_05250at 780.950 kb on + strand, within MPMX19_05250at 780.950 kb on + strand, within MPMX19_05250at 780.950 kb on + strand, within MPMX19_05250at 780.950 kb on + strand, within MPMX19_05250at 780.950 kb on + strand, within MPMX19_05250at 780.951 kb on - strand, within MPMX19_05250at 780.951 kb on - strand, within MPMX19_05250at 780.951 kb on - strand, within MPMX19_05250at 780.951 kb on - strand, within MPMX19_05250at 780.951 kb on - strand, within MPMX19_05250at 780.951 kb on - strand, within MPMX19_05250at 780.951 kb on - strand, within MPMX19_05250at 781.042 kb on + strandat 781.203 kb on + strandat 781.203 kb on + strandat 781.317 kb on + strand, within MPMX19_05251at 781.317 kb on + strand, within MPMX19_05251at 781.317 kb on + strand, within MPMX19_05251at 781.317 kb on + strand, within MPMX19_05251at 781.317 kb on + strand, within MPMX19_05251at 781.317 kb on + strand, within MPMX19_05251at 781.317 kb on + strand, within MPMX19_05251at 781.317 kb on + strand, within MPMX19_05251at 781.318 kb on - strand, within MPMX19_05251at 781.318 kb on - strand, within MPMX19_05251at 781.318 kb on - strand, within MPMX19_05251at 781.318 kb on - strand, within MPMX19_05251at 781.318 kb on - strand, within MPMX19_05251at 781.318 kb on - strand, within MPMX19_05251at 781.318 kb on - strand, within MPMX19_05251at 781.318 kb on - strand, within MPMX19_05251at 781.318 kb on - strand, within MPMX19_05251at 781.446 kb on + strand, within MPMX19_05251at 781.446 kb on + strand, within MPMX19_05251at 781.446 kb on + strand, within MPMX19_05251at 781.446 kb on + strand, within MPMX19_05251at 781.446 kb on + strand, within MPMX19_05251at 781.446 kb on + strand, within MPMX19_05251at 781.447 kb on - strand, within MPMX19_05251at 781.447 kb on - strand, within MPMX19_05251at 781.447 kb on - strand, within MPMX19_05251at 781.447 kb on - strand, within MPMX19_05251at 781.447 kb on - strand, within MPMX19_05251at 781.447 kb on - strand, within MPMX19_05251at 781.447 kb on - strand, within MPMX19_05251at 781.447 kb on - strand, within MPMX19_05251at 781.560 kb on + strand, within MPMX19_05251at 781.560 kb on + strand, within MPMX19_05251at 781.561 kb on - strand, within MPMX19_05251at 781.584 kb on + strand, within MPMX19_05251at 781.584 kb on + strand, within MPMX19_05251at 781.584 kb on + strand, within MPMX19_05251at 781.584 kb on + strand, within MPMX19_05251at 781.584 kb on + strand, within MPMX19_05251at 781.584 kb on + strand, within MPMX19_05251at 781.584 kb on + strand, within MPMX19_05251at 781.584 kb on + strand, within MPMX19_05251at 781.584 kb on + strand, within MPMX19_05251at 781.584 kb on + strand, within MPMX19_05251at 781.584 kb on + strand, within MPMX19_05251at 781.585 kb on - strand, within MPMX19_05251at 781.585 kb on - strand, within MPMX19_05251at 781.585 kb on - strand, within MPMX19_05251at 781.585 kb on - strand, within MPMX19_05251at 781.585 kb on - strand, within MPMX19_05251at 781.779 kb on + strand, within MPMX19_05251at 781.779 kb on + strand, within MPMX19_05251at 781.779 kb on + strand, within MPMX19_05251at 781.779 kb on + strand, within MPMX19_05251at 781.779 kb on + strand, within MPMX19_05251at 781.779 kb on + strand, within MPMX19_05251at 781.779 kb on + strand, within MPMX19_05251at 781.779 kb on + strand, within MPMX19_05251at 781.779 kb on + strand, within MPMX19_05251at 781.779 kb on + strand, within MPMX19_05251at 781.779 kb on + strand, within MPMX19_05251at 781.779 kb on + strand, within MPMX19_05251at 781.780 kb on - strand, within MPMX19_05251at 781.780 kb on - strand, within MPMX19_05251at 781.780 kb on - strand, within MPMX19_05251at 781.780 kb on - strand, within MPMX19_05251at 781.780 kb on - strand, within MPMX19_05251at 781.780 kb on - strand, within MPMX19_05251at 781.780 kb on - strand, within MPMX19_05251at 781.780 kb on - strand, within MPMX19_05251at 781.780 kb on - strand, within MPMX19_05251at 781.780 kb on - strand, within MPMX19_05251at 781.780 kb on - strand, within MPMX19_05251at 781.780 kb on - strand, within MPMX19_05251at 781.791 kb on + strand, within MPMX19_05251at 781.791 kb on + strand, within MPMX19_05251at 781.791 kb on + strand, within MPMX19_05251at 781.791 kb on + strand, within MPMX19_05251at 781.791 kb on + strand, within MPMX19_05251at 781.791 kb on + strand, within MPMX19_05251at 781.791 kb on + strand, within MPMX19_05251at 781.791 kb on + strand, within MPMX19_05251at 781.791 kb on + strand, within MPMX19_05251at 781.791 kb on + strand, within MPMX19_05251at 781.791 kb on + strand, within MPMX19_05251at 781.792 kb on - strand, within MPMX19_05251at 781.792 kb on - strand, within MPMX19_05251at 781.792 kb on - strand, within MPMX19_05251at 781.792 kb on - strand, within MPMX19_05251at 781.792 kb on - strand, within MPMX19_05251at 781.792 kb on - strand, within MPMX19_05251at 781.821 kb on + strand, within MPMX19_05251at 781.821 kb on + strand, within MPMX19_05251at 781.821 kb on + strand, within MPMX19_05251at 781.821 kb on + strand, within MPMX19_05251at 781.821 kb on + strand, within MPMX19_05251at 781.821 kb on + strand, within MPMX19_05251at 781.821 kb on + strand, within MPMX19_05251at 781.821 kb on + strand, within MPMX19_05251at 781.821 kb on + strand, within MPMX19_05251at 781.821 kb on + strand, within MPMX19_05251at 781.821 kb on + strand, within MPMX19_05251at 781.821 kb on + strand, within MPMX19_05251at 781.821 kb on + strand, within MPMX19_05251at 781.821 kb on + strand, within MPMX19_05251at 781.821 kb on + strand, within MPMX19_05251at 781.821 kb on + strand, within MPMX19_05251at 781.821 kb on + strand, within MPMX19_05251at 781.821 kb on + strand, within MPMX19_05251at 781.821 kb on + strand, within MPMX19_05251at 781.822 kb on - strand, within MPMX19_05251at 781.822 kb on - strand, within MPMX19_05251at 781.822 kb on - strand, within MPMX19_05251at 781.822 kb on - strand, within MPMX19_05251at 781.822 kb on - strand, within MPMX19_05251at 781.822 kb on - strand, within MPMX19_05251at 781.822 kb on - strand, within MPMX19_05251at 781.822 kb on - strand, within MPMX19_05251at 781.822 kb on - strand, within MPMX19_05251at 781.822 kb on - strand, within MPMX19_05251at 781.822 kb on - strand, within MPMX19_05251at 781.822 kb on - strand, within MPMX19_05251at 781.822 kb on - strand, within MPMX19_05251at 781.822 kb on - strand, within MPMX19_05251at 781.822 kb on - strand, within MPMX19_05251at 781.822 kb on - strand, within MPMX19_05251at 781.822 kb on - strand, within MPMX19_05251at 781.822 kb on - strand, within MPMX19_05251at 781.822 kb on - strand, within MPMX19_05251at 781.822 kb on - strand, within MPMX19_05251at 781.974 kb on + strandat 781.974 kb on + strandat 781.974 kb on + strandat 781.974 kb on + strandat 781.975 kb on - strandat 781.975 kb on - strandat 781.975 kb on - strandat 781.975 kb on - strandat 781.975 kb on - strandat 781.975 kb on - strandat 782.161 kb on + strandat 782.162 kb on - strandat 782.162 kb on - strandat 782.353 kb on + strand, within MPMX19_05252at 782.384 kb on - strand, within MPMX19_05252at 782.384 kb on - strand, within MPMX19_05252at 782.384 kb on - strand, within MPMX19_05252at 782.407 kb on + strand, within MPMX19_05252at 782.407 kb on + strand, within MPMX19_05252at 782.408 kb on - strand, within MPMX19_05252at 782.537 kb on - strand, within MPMX19_05252at 782.881 kb on + strandat 782.881 kb on + strandat 782.881 kb on + strandat 782.881 kb on + strandat 782.881 kb on + strandat 782.882 kb on - strandat 782.882 kb on - strandat 782.882 kb on - strandat 782.882 kb on - strandat 782.882 kb on - strandat 782.882 kb on - strandat 782.893 kb on + strandat 782.893 kb on + strandat 782.893 kb on + strandat 782.893 kb on + strandat 782.893 kb on + strandat 782.893 kb on + strandat 782.893 kb on + strandat 782.893 kb on + strandat 782.893 kb on + strandat 782.893 kb on + strandat 782.893 kb on + strandat 782.893 kb on + strandat 782.893 kb on + strandat 782.894 kb on - strandat 782.894 kb on - strandat 782.894 kb on - strandat 782.902 kb on + strandat 782.928 kb on - strandat 782.928 kb on - strandat 783.014 kb on + strandat 783.015 kb on - strandat 783.015 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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780,162 + MPMX19_05250 0.23 -0.8
780,172 + MPMX19_05250 0.23 -1.6
780,172 + MPMX19_05250 0.23 -1.0
780,172 + MPMX19_05250 0.23 -0.4
780,172 + MPMX19_05250 0.23 +0.6
780,172 + MPMX19_05250 0.23 -0.0
780,172 + MPMX19_05250 0.23 -0.0
780,173 - MPMX19_05250 0.23 -1.6
780,173 - MPMX19_05250 0.23 +0.8
780,173 - MPMX19_05250 0.23 +0.3
780,173 - MPMX19_05250 0.23 -0.3
780,173 - MPMX19_05250 0.23 -0.1
780,173 - MPMX19_05250 0.23 -0.6
780,173 - MPMX19_05250 0.23 -1.4
780,313 + MPMX19_05250 0.35 -0.4
780,313 + MPMX19_05250 0.35 -1.0
780,313 + MPMX19_05250 0.35 +0.2
780,313 + MPMX19_05250 0.35 -0.1
780,313 + MPMX19_05250 0.35 -0.6
780,314 - MPMX19_05250 0.35 +0.3
780,314 - MPMX19_05250 0.35 -1.4
780,314 - MPMX19_05250 0.35 -0.0
780,314 - MPMX19_05250 0.35 +0.1
780,314 - MPMX19_05250 0.35 -0.0
780,416 + MPMX19_05250 0.43 -0.2
780,417 - MPMX19_05250 0.44 +0.6
780,950 + MPMX19_05250 0.87 -1.4
780,950 + MPMX19_05250 0.87 -0.3
780,950 + MPMX19_05250 0.87 -0.1
780,950 + MPMX19_05250 0.87 -0.8
780,950 + MPMX19_05250 0.87 -0.7
780,951 - MPMX19_05250 0.87 -1.6
780,951 - MPMX19_05250 0.87 -1.1
780,951 - MPMX19_05250 0.87 -1.2
780,951 - MPMX19_05250 0.87 -0.2
780,951 - MPMX19_05250 0.87 -0.8
780,951 - MPMX19_05250 0.87 -0.4
780,951 - MPMX19_05250 0.87 -0.3
781,042 + -1.0
781,203 + +0.3
781,203 + +0.4
781,317 + MPMX19_05251 0.22 +0.4
781,317 + MPMX19_05251 0.22 -0.1
781,317 + MPMX19_05251 0.22 -0.0
781,317 + MPMX19_05251 0.22 +1.6
781,317 + MPMX19_05251 0.22 -0.4
781,317 + MPMX19_05251 0.22 +0.9
781,317 + MPMX19_05251 0.22 -0.0
781,317 + MPMX19_05251 0.22 -1.1
781,318 - MPMX19_05251 0.22 -1.5
781,318 - MPMX19_05251 0.22 -0.3
781,318 - MPMX19_05251 0.22 +0.1
781,318 - MPMX19_05251 0.22 -1.0
781,318 - MPMX19_05251 0.22 -0.6
781,318 - MPMX19_05251 0.22 +0.2
781,318 - MPMX19_05251 0.22 +0.8
781,318 - MPMX19_05251 0.22 -1.3
781,318 - MPMX19_05251 0.22 -1.0
781,446 + MPMX19_05251 0.36 -0.4
781,446 + MPMX19_05251 0.36 -0.5
781,446 + MPMX19_05251 0.36 -1.1
781,446 + MPMX19_05251 0.36 -0.3
781,446 + MPMX19_05251 0.36 +0.3
781,446 + MPMX19_05251 0.36 -2.0
781,447 - MPMX19_05251 0.36 +0.1
781,447 - MPMX19_05251 0.36 -0.0
781,447 - MPMX19_05251 0.36 +0.8
781,447 - MPMX19_05251 0.36 -1.3
781,447 - MPMX19_05251 0.36 -1.4
781,447 - MPMX19_05251 0.36 -1.2
781,447 - MPMX19_05251 0.36 -0.2
781,447 - MPMX19_05251 0.36 -2.2
781,560 + MPMX19_05251 0.48 -0.2
781,560 + MPMX19_05251 0.48 -0.0
781,561 - MPMX19_05251 0.49 +0.8
781,584 + MPMX19_05251 0.51 +0.8
781,584 + MPMX19_05251 0.51 -1.0
781,584 + MPMX19_05251 0.51 +2.1
781,584 + MPMX19_05251 0.51 -1.6
781,584 + MPMX19_05251 0.51 -0.4
781,584 + MPMX19_05251 0.51 +0.1
781,584 + MPMX19_05251 0.51 +0.1
781,584 + MPMX19_05251 0.51 +0.0
781,584 + MPMX19_05251 0.51 -0.6
781,584 + MPMX19_05251 0.51 -0.2
781,584 + MPMX19_05251 0.51 -0.1
781,585 - MPMX19_05251 0.51 -0.5
781,585 - MPMX19_05251 0.51 -0.6
781,585 - MPMX19_05251 0.51 -0.2
781,585 - MPMX19_05251 0.51 -1.2
781,585 - MPMX19_05251 0.51 -1.6
781,779 + MPMX19_05251 0.72 +0.3
781,779 + MPMX19_05251 0.72 -0.7
781,779 + MPMX19_05251 0.72 -0.9
781,779 + MPMX19_05251 0.72 +0.4
781,779 + MPMX19_05251 0.72 -1.4
781,779 + MPMX19_05251 0.72 -2.8
781,779 + MPMX19_05251 0.72 -0.6
781,779 + MPMX19_05251 0.72 -0.0
781,779 + MPMX19_05251 0.72 +0.3
781,779 + MPMX19_05251 0.72 -1.4
781,779 + MPMX19_05251 0.72 -2.1
781,779 + MPMX19_05251 0.72 -1.3
781,780 - MPMX19_05251 0.72 -2.2
781,780 - MPMX19_05251 0.72 +0.1
781,780 - MPMX19_05251 0.72 -0.6
781,780 - MPMX19_05251 0.72 -0.4
781,780 - MPMX19_05251 0.72 -0.9
781,780 - MPMX19_05251 0.72 -0.8
781,780 - MPMX19_05251 0.72 -0.2
781,780 - MPMX19_05251 0.72 +0.9
781,780 - MPMX19_05251 0.72 +0.2
781,780 - MPMX19_05251 0.72 +1.3
781,780 - MPMX19_05251 0.72 +0.7
781,780 - MPMX19_05251 0.72 -3.4
781,791 + MPMX19_05251 0.73 -1.2
781,791 + MPMX19_05251 0.73 -2.0
781,791 + MPMX19_05251 0.73 +0.1
781,791 + MPMX19_05251 0.73 +0.2
781,791 + MPMX19_05251 0.73 -0.4
781,791 + MPMX19_05251 0.73 +1.0
781,791 + MPMX19_05251 0.73 +0.6
781,791 + MPMX19_05251 0.73 -0.2
781,791 + MPMX19_05251 0.73 -1.0
781,791 + MPMX19_05251 0.73 +0.3
781,791 + MPMX19_05251 0.73 -0.4
781,792 - MPMX19_05251 0.74 +0.2
781,792 - MPMX19_05251 0.74 +0.4
781,792 - MPMX19_05251 0.74 -0.3
781,792 - MPMX19_05251 0.74 +0.2
781,792 - MPMX19_05251 0.74 +0.6
781,792 - MPMX19_05251 0.74 -0.8
781,821 + MPMX19_05251 0.77 -0.4
781,821 + MPMX19_05251 0.77 -1.6
781,821 + MPMX19_05251 0.77 -0.3
781,821 + MPMX19_05251 0.77 -1.4
781,821 + MPMX19_05251 0.77 -0.2
781,821 + MPMX19_05251 0.77 -0.3
781,821 + MPMX19_05251 0.77 -0.3
781,821 + MPMX19_05251 0.77 -0.4
781,821 + MPMX19_05251 0.77 -1.8
781,821 + MPMX19_05251 0.77 -0.2
781,821 + MPMX19_05251 0.77 -0.0
781,821 + MPMX19_05251 0.77 +0.2
781,821 + MPMX19_05251 0.77 -2.0
781,821 + MPMX19_05251 0.77 -0.6
781,821 + MPMX19_05251 0.77 -1.4
781,821 + MPMX19_05251 0.77 -0.0
781,821 + MPMX19_05251 0.77 -0.1
781,821 + MPMX19_05251 0.77 -0.7
781,821 + MPMX19_05251 0.77 -0.7
781,822 - MPMX19_05251 0.77 -0.6
781,822 - MPMX19_05251 0.77 -0.3
781,822 - MPMX19_05251 0.77 +0.3
781,822 - MPMX19_05251 0.77 -0.4
781,822 - MPMX19_05251 0.77 +0.0
781,822 - MPMX19_05251 0.77 -1.2
781,822 - MPMX19_05251 0.77 -0.3
781,822 - MPMX19_05251 0.77 -0.8
781,822 - MPMX19_05251 0.77 +0.5
781,822 - MPMX19_05251 0.77 -0.6
781,822 - MPMX19_05251 0.77 -0.7
781,822 - MPMX19_05251 0.77 -0.6
781,822 - MPMX19_05251 0.77 -1.2
781,822 - MPMX19_05251 0.77 -1.0
781,822 - MPMX19_05251 0.77 -1.6
781,822 - MPMX19_05251 0.77 -1.4
781,822 - MPMX19_05251 0.77 -1.2
781,822 - MPMX19_05251 0.77 -0.9
781,822 - MPMX19_05251 0.77 -0.2
781,822 - MPMX19_05251 0.77 -0.0
781,974 + -0.8
781,974 + -0.8
781,974 + -1.1
781,974 + -1.4
781,975 - -2.2
781,975 - -1.3
781,975 - -1.8
781,975 - -0.6
781,975 - -0.4
781,975 - -1.2
782,161 + -0.1
782,162 - -0.3
782,162 - -0.7
782,353 + MPMX19_05252 0.31 +0.2
782,384 - MPMX19_05252 0.35 -1.0
782,384 - MPMX19_05252 0.35 -0.2
782,384 - MPMX19_05252 0.35 -2.2
782,407 + MPMX19_05252 0.38 -0.6
782,407 + MPMX19_05252 0.38 +0.2
782,408 - MPMX19_05252 0.38 -0.8
782,537 - MPMX19_05252 0.54 +0.8
782,881 + -0.2
782,881 + +2.0
782,881 + -0.2
782,881 + +1.1
782,881 + -0.2
782,882 - -0.8
782,882 - -0.4
782,882 - -0.2
782,882 - -1.1
782,882 - -0.6
782,882 - -2.1
782,893 + -2.7
782,893 + -0.4
782,893 + -0.2
782,893 + -0.6
782,893 + -0.6
782,893 + -1.9
782,893 + -1.1
782,893 + +0.4
782,893 + -0.9
782,893 + -0.8
782,893 + -0.0
782,893 + -0.4
782,893 + +0.6
782,894 - -0.2
782,894 - -0.2
782,894 - +1.1
782,902 + -1.8
782,928 - +0.6
782,928 - -1.4
783,014 + -1.2
783,015 - -0.3
783,015 - -0.5

Or see this region's nucleotide sequence