Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05205 and MPMX19_05206 are separated by 482 nucleotides MPMX19_05206 and MPMX19_05207 are separated by 142 nucleotides
MPMX19_05205: MPMX19_05205 - hypothetical protein, at 709,353 to 710,384
_05205
MPMX19_05206: MPMX19_05206 - Toxin RTX-I translocation ATP-binding protein, at 710,867 to 713,029
_05206
MPMX19_05207: MPMX19_05207 - Hemolysin secretion protein D, plasmid, at 713,172 to 714,488
_05207
Position (kb) 710
711
712
713
714 Strain fitness (log2 ratio) -2
-1
0
1
2 at 710.242 kb on + strand, within MPMX19_05205 at 710.254 kb on + strand, within MPMX19_05205 at 710.549 kb on + strand at 710.644 kb on + strand at 710.644 kb on + strand at 710.648 kb on + strand at 710.649 kb on - strand at 710.674 kb on + strand at 710.920 kb on + strand at 710.920 kb on + strand at 710.920 kb on + strand at 710.920 kb on + strand at 710.920 kb on + strand at 710.920 kb on + strand at 710.921 kb on - strand at 710.921 kb on - strand at 710.921 kb on - strand at 711.125 kb on + strand, within MPMX19_05206 at 711.125 kb on + strand, within MPMX19_05206 at 711.125 kb on + strand, within MPMX19_05206 at 711.125 kb on + strand, within MPMX19_05206 at 711.126 kb on - strand, within MPMX19_05206 at 711.126 kb on - strand, within MPMX19_05206 at 711.320 kb on + strand, within MPMX19_05206 at 711.320 kb on + strand, within MPMX19_05206 at 711.320 kb on + strand, within MPMX19_05206 at 711.512 kb on + strand, within MPMX19_05206 at 711.512 kb on + strand, within MPMX19_05206 at 711.512 kb on + strand, within MPMX19_05206 at 711.512 kb on + strand, within MPMX19_05206 at 711.512 kb on + strand, within MPMX19_05206 at 711.512 kb on + strand, within MPMX19_05206 at 711.512 kb on + strand, within MPMX19_05206 at 711.513 kb on - strand, within MPMX19_05206 at 711.513 kb on - strand, within MPMX19_05206 at 711.513 kb on - strand, within MPMX19_05206 at 711.596 kb on + strand, within MPMX19_05206 at 711.597 kb on - strand, within MPMX19_05206 at 711.597 kb on - strand, within MPMX19_05206 at 711.737 kb on + strand, within MPMX19_05206 at 711.737 kb on + strand, within MPMX19_05206 at 711.737 kb on + strand, within MPMX19_05206 at 711.737 kb on + strand, within MPMX19_05206 at 711.737 kb on + strand, within MPMX19_05206 at 711.738 kb on - strand, within MPMX19_05206 at 711.738 kb on - strand, within MPMX19_05206 at 711.738 kb on - strand, within MPMX19_05206 at 711.738 kb on - strand, within MPMX19_05206 at 711.738 kb on - strand, within MPMX19_05206 at 711.782 kb on + strand, within MPMX19_05206 at 711.782 kb on + strand, within MPMX19_05206 at 711.783 kb on - strand, within MPMX19_05206 at 711.959 kb on + strand, within MPMX19_05206 at 711.959 kb on + strand, within MPMX19_05206 at 711.959 kb on + strand, within MPMX19_05206 at 711.959 kb on + strand, within MPMX19_05206 at 711.959 kb on + strand, within MPMX19_05206 at 711.959 kb on + strand, within MPMX19_05206 at 711.959 kb on + strand, within MPMX19_05206 at 711.959 kb on + strand, within MPMX19_05206 at 711.960 kb on - strand, within MPMX19_05206 at 711.960 kb on - strand, within MPMX19_05206 at 711.960 kb on - strand, within MPMX19_05206 at 711.960 kb on - strand, within MPMX19_05206 at 711.960 kb on - strand, within MPMX19_05206 at 711.960 kb on - strand, within MPMX19_05206 at 711.960 kb on - strand, within MPMX19_05206 at 711.960 kb on - strand, within MPMX19_05206 at 711.960 kb on - strand, within MPMX19_05206 at 712.052 kb on + strand, within MPMX19_05206 at 712.052 kb on + strand, within MPMX19_05206 at 712.052 kb on + strand, within MPMX19_05206 at 712.052 kb on + strand, within MPMX19_05206 at 712.052 kb on + strand, within MPMX19_05206 at 712.052 kb on + strand, within MPMX19_05206 at 712.052 kb on + strand, within MPMX19_05206 at 712.053 kb on - strand, within MPMX19_05206 at 712.053 kb on - strand, within MPMX19_05206 at 712.053 kb on - strand, within MPMX19_05206 at 712.053 kb on - strand, within MPMX19_05206 at 712.053 kb on - strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.661 kb on + strand, within MPMX19_05206 at 712.662 kb on - strand, within MPMX19_05206 at 712.968 kb on - strand at 712.968 kb on - strand at 713.793 kb on + strand, within MPMX19_05207 at 713.794 kb on - strand, within MPMX19_05207 at 713.794 kb on - strand, within MPMX19_05207 at 713.794 kb on - strand, within MPMX19_05207
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 710,242 + MPMX19_05205 0.86 +0.6 710,254 + MPMX19_05205 0.87 +0.2 710,549 + -2.1 710,644 + -1.0 710,644 + -0.7 710,648 + -0.7 710,649 - -0.2 710,674 + -0.0 710,920 + -1.8 710,920 + +0.2 710,920 + -0.0 710,920 + -1.4 710,920 + +0.0 710,920 + +1.2 710,921 - -1.4 710,921 - -0.6 710,921 - -0.2 711,125 + MPMX19_05206 0.12 -1.1 711,125 + MPMX19_05206 0.12 -0.5 711,125 + MPMX19_05206 0.12 -0.4 711,125 + MPMX19_05206 0.12 +0.1 711,126 - MPMX19_05206 0.12 -0.5 711,126 - MPMX19_05206 0.12 +2.6 711,320 + MPMX19_05206 0.21 -0.8 711,320 + MPMX19_05206 0.21 -0.3 711,320 + MPMX19_05206 0.21 +0.4 711,512 + MPMX19_05206 0.30 -1.4 711,512 + MPMX19_05206 0.30 -0.9 711,512 + MPMX19_05206 0.30 +0.0 711,512 + MPMX19_05206 0.30 +0.1 711,512 + MPMX19_05206 0.30 -0.8 711,512 + MPMX19_05206 0.30 +0.4 711,512 + MPMX19_05206 0.30 -0.9 711,513 - MPMX19_05206 0.30 +0.6 711,513 - MPMX19_05206 0.30 -1.8 711,513 - MPMX19_05206 0.30 -0.0 711,596 + MPMX19_05206 0.34 +0.2 711,597 - MPMX19_05206 0.34 -1.6 711,597 - MPMX19_05206 0.34 +0.3 711,737 + MPMX19_05206 0.40 -0.2 711,737 + MPMX19_05206 0.40 -0.7 711,737 + MPMX19_05206 0.40 -0.5 711,737 + MPMX19_05206 0.40 -0.8 711,737 + MPMX19_05206 0.40 +0.1 711,738 - MPMX19_05206 0.40 +0.2 711,738 - MPMX19_05206 0.40 -0.8 711,738 - MPMX19_05206 0.40 +0.6 711,738 - MPMX19_05206 0.40 +0.1 711,738 - MPMX19_05206 0.40 +1.1 711,782 + MPMX19_05206 0.42 -0.2 711,782 + MPMX19_05206 0.42 +1.1 711,783 - MPMX19_05206 0.42 -0.1 711,959 + MPMX19_05206 0.50 +1.4 711,959 + MPMX19_05206 0.50 +1.2 711,959 + MPMX19_05206 0.50 -0.0 711,959 + MPMX19_05206 0.50 -0.1 711,959 + MPMX19_05206 0.50 +1.1 711,959 + MPMX19_05206 0.50 +0.2 711,959 + MPMX19_05206 0.50 +0.3 711,959 + MPMX19_05206 0.50 -0.0 711,960 - MPMX19_05206 0.51 -0.9 711,960 - MPMX19_05206 0.51 -1.0 711,960 - MPMX19_05206 0.51 +0.9 711,960 - MPMX19_05206 0.51 -1.6 711,960 - MPMX19_05206 0.51 +1.1 711,960 - MPMX19_05206 0.51 +1.5 711,960 - MPMX19_05206 0.51 +0.3 711,960 - MPMX19_05206 0.51 +0.6 711,960 - MPMX19_05206 0.51 -0.4 712,052 + MPMX19_05206 0.55 +0.1 712,052 + MPMX19_05206 0.55 +0.9 712,052 + MPMX19_05206 0.55 +0.6 712,052 + MPMX19_05206 0.55 -2.2 712,052 + MPMX19_05206 0.55 -1.5 712,052 + MPMX19_05206 0.55 -0.3 712,052 + MPMX19_05206 0.55 -2.0 712,053 - MPMX19_05206 0.55 +1.1 712,053 - MPMX19_05206 0.55 -1.0 712,053 - MPMX19_05206 0.55 -1.1 712,053 - MPMX19_05206 0.55 -1.4 712,053 - MPMX19_05206 0.55 -1.2 712,433 + MPMX19_05206 0.72 +1.6 712,433 + MPMX19_05206 0.72 -2.2 712,433 + MPMX19_05206 0.72 +0.6 712,433 + MPMX19_05206 0.72 +1.1 712,433 + MPMX19_05206 0.72 -0.1 712,433 + MPMX19_05206 0.72 -0.4 712,433 + MPMX19_05206 0.72 -0.0 712,433 + MPMX19_05206 0.72 -0.6 712,433 + MPMX19_05206 0.72 -0.1 712,433 + MPMX19_05206 0.72 -0.4 712,433 + MPMX19_05206 0.72 -1.9 712,433 + MPMX19_05206 0.72 -0.6 712,433 + MPMX19_05206 0.72 +0.1 712,433 + MPMX19_05206 0.72 -0.0 712,433 + MPMX19_05206 0.72 -1.0 712,433 + MPMX19_05206 0.72 -0.9 712,433 + MPMX19_05206 0.72 +0.6 712,433 + MPMX19_05206 0.72 -0.7 712,433 + MPMX19_05206 0.72 +1.1 712,433 + MPMX19_05206 0.72 -1.2 712,433 + MPMX19_05206 0.72 -0.6 712,434 - MPMX19_05206 0.72 -0.8 712,434 - MPMX19_05206 0.72 +0.4 712,434 - MPMX19_05206 0.72 -0.2 712,434 - MPMX19_05206 0.72 +0.5 712,434 - MPMX19_05206 0.72 -0.3 712,434 - MPMX19_05206 0.72 +0.7 712,434 - MPMX19_05206 0.72 +0.2 712,434 - MPMX19_05206 0.72 -0.1 712,434 - MPMX19_05206 0.72 -0.0 712,434 - MPMX19_05206 0.72 -0.2 712,434 - MPMX19_05206 0.72 -1.0 712,434 - MPMX19_05206 0.72 -1.8 712,434 - MPMX19_05206 0.72 +0.8 712,434 - MPMX19_05206 0.72 -0.8 712,434 - MPMX19_05206 0.72 -0.2 712,434 - MPMX19_05206 0.72 -1.4 712,434 - MPMX19_05206 0.72 +0.9 712,434 - MPMX19_05206 0.72 -0.3 712,434 - MPMX19_05206 0.72 -0.4 712,661 + MPMX19_05206 0.83 +0.1 712,662 - MPMX19_05206 0.83 -1.4 712,968 - +0.2 712,968 - -1.6 713,793 + MPMX19_05207 0.47 +0.1 713,794 - MPMX19_05207 0.47 -1.4 713,794 - MPMX19_05207 0.47 -0.0 713,794 - MPMX19_05207 0.47 -0.0
Or see this region's nucleotide sequence