Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05187

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05186 and MPMX19_05187 are separated by 15 nucleotidesMPMX19_05187 and MPMX19_05188 are separated by 12 nucleotidesMPMX19_05188 and MPMX19_05189 overlap by 7 nucleotides MPMX19_05186: MPMX19_05186 - Thiosulfate sulfurtransferase GlpE, at 689,322 to 690,953 _05186 MPMX19_05187: MPMX19_05187 - 3-mercaptopropionate dioxygenase, at 690,969 to 691,607 _05187 MPMX19_05188: MPMX19_05188 - Aliphatic sulfonates import ATP-binding protein SsuB, at 691,620 to 692,414 _05188 MPMX19_05189: MPMX19_05189 - hypothetical protein, at 692,408 to 693,460 _05189 Position (kb) 690 691 692Strain fitness (log2 ratio) -2 -1 0 1 2at 689.990 kb on - strand, within MPMX19_05186at 689.990 kb on - strand, within MPMX19_05186at 689.990 kb on - strand, within MPMX19_05186at 689.990 kb on - strand, within MPMX19_05186at 690.058 kb on + strand, within MPMX19_05186at 690.058 kb on + strand, within MPMX19_05186at 690.058 kb on + strand, within MPMX19_05186at 690.058 kb on + strand, within MPMX19_05186at 690.071 kb on + strand, within MPMX19_05186at 690.072 kb on - strand, within MPMX19_05186at 690.072 kb on - strand, within MPMX19_05186at 690.466 kb on + strand, within MPMX19_05186at 690.466 kb on + strand, within MPMX19_05186at 690.466 kb on + strand, within MPMX19_05186at 690.467 kb on - strand, within MPMX19_05186at 690.677 kb on - strand, within MPMX19_05186at 690.716 kb on - strand, within MPMX19_05186at 690.716 kb on - strand, within MPMX19_05186at 690.734 kb on - strand, within MPMX19_05186at 690.734 kb on - strand, within MPMX19_05186at 690.734 kb on - strand, within MPMX19_05186at 690.734 kb on - strand, within MPMX19_05186at 690.734 kb on - strand, within MPMX19_05186at 690.734 kb on - strand, within MPMX19_05186at 690.772 kb on + strand, within MPMX19_05186at 690.772 kb on + strand, within MPMX19_05186at 690.773 kb on - strand, within MPMX19_05186at 690.773 kb on - strand, within MPMX19_05186at 690.835 kb on + strandat 690.835 kb on + strandat 690.836 kb on - strandat 691.108 kb on + strand, within MPMX19_05187at 691.108 kb on + strand, within MPMX19_05187at 691.108 kb on + strand, within MPMX19_05187at 691.108 kb on + strand, within MPMX19_05187at 691.108 kb on + strand, within MPMX19_05187at 691.108 kb on + strand, within MPMX19_05187at 691.108 kb on + strand, within MPMX19_05187at 691.108 kb on + strand, within MPMX19_05187at 691.109 kb on - strand, within MPMX19_05187at 691.109 kb on - strand, within MPMX19_05187at 691.109 kb on - strand, within MPMX19_05187at 691.109 kb on - strand, within MPMX19_05187at 691.109 kb on - strand, within MPMX19_05187at 691.109 kb on - strand, within MPMX19_05187at 691.109 kb on - strand, within MPMX19_05187at 691.109 kb on - strand, within MPMX19_05187at 691.109 kb on - strand, within MPMX19_05187at 691.258 kb on + strand, within MPMX19_05187at 691.258 kb on + strand, within MPMX19_05187at 691.258 kb on + strand, within MPMX19_05187at 691.259 kb on - strand, within MPMX19_05187at 691.376 kb on - strand, within MPMX19_05187at 691.429 kb on + strand, within MPMX19_05187at 691.429 kb on + strand, within MPMX19_05187at 691.429 kb on + strand, within MPMX19_05187at 691.429 kb on + strand, within MPMX19_05187at 691.429 kb on + strand, within MPMX19_05187at 691.429 kb on + strand, within MPMX19_05187at 691.429 kb on + strand, within MPMX19_05187at 691.429 kb on + strand, within MPMX19_05187at 691.984 kb on + strand, within MPMX19_05188at 691.984 kb on + strand, within MPMX19_05188at 691.984 kb on + strand, within MPMX19_05188at 691.985 kb on - strand, within MPMX19_05188at 692.110 kb on + strand, within MPMX19_05188at 692.110 kb on + strand, within MPMX19_05188at 692.111 kb on - strand, within MPMX19_05188at 692.410 kb on - strandat 692.557 kb on - strand, within MPMX19_05189at 692.557 kb on - strand, within MPMX19_05189

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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689,990 - MPMX19_05186 0.41 -0.9
689,990 - MPMX19_05186 0.41 -1.6
689,990 - MPMX19_05186 0.41 +1.9
689,990 - MPMX19_05186 0.41 +0.4
690,058 + MPMX19_05186 0.45 -1.0
690,058 + MPMX19_05186 0.45 -0.2
690,058 + MPMX19_05186 0.45 -0.4
690,058 + MPMX19_05186 0.45 -0.6
690,071 + MPMX19_05186 0.46 -0.2
690,072 - MPMX19_05186 0.46 -1.1
690,072 - MPMX19_05186 0.46 -0.9
690,466 + MPMX19_05186 0.70 +1.0
690,466 + MPMX19_05186 0.70 -0.0
690,466 + MPMX19_05186 0.70 -0.4
690,467 - MPMX19_05186 0.70 -0.8
690,677 - MPMX19_05186 0.83 +0.4
690,716 - MPMX19_05186 0.85 +1.2
690,716 - MPMX19_05186 0.85 +1.0
690,734 - MPMX19_05186 0.87 -0.7
690,734 - MPMX19_05186 0.87 -0.2
690,734 - MPMX19_05186 0.87 +1.1
690,734 - MPMX19_05186 0.87 -1.6
690,734 - MPMX19_05186 0.87 -1.0
690,734 - MPMX19_05186 0.87 -0.4
690,772 + MPMX19_05186 0.89 -0.5
690,772 + MPMX19_05186 0.89 +2.1
690,773 - MPMX19_05186 0.89 -0.3
690,773 - MPMX19_05186 0.89 -0.3
690,835 + +0.3
690,835 + +0.6
690,836 - +0.2
691,108 + MPMX19_05187 0.22 -0.0
691,108 + MPMX19_05187 0.22 +1.6
691,108 + MPMX19_05187 0.22 -0.4
691,108 + MPMX19_05187 0.22 -0.4
691,108 + MPMX19_05187 0.22 -0.1
691,108 + MPMX19_05187 0.22 +0.3
691,108 + MPMX19_05187 0.22 +0.3
691,108 + MPMX19_05187 0.22 +0.1
691,109 - MPMX19_05187 0.22 -0.6
691,109 - MPMX19_05187 0.22 -0.6
691,109 - MPMX19_05187 0.22 -0.2
691,109 - MPMX19_05187 0.22 -1.6
691,109 - MPMX19_05187 0.22 +1.0
691,109 - MPMX19_05187 0.22 -0.6
691,109 - MPMX19_05187 0.22 +0.3
691,109 - MPMX19_05187 0.22 +0.4
691,109 - MPMX19_05187 0.22 -0.4
691,258 + MPMX19_05187 0.45 -0.1
691,258 + MPMX19_05187 0.45 -0.3
691,258 + MPMX19_05187 0.45 +0.6
691,259 - MPMX19_05187 0.45 -2.2
691,376 - MPMX19_05187 0.64 +0.2
691,429 + MPMX19_05187 0.72 +0.9
691,429 + MPMX19_05187 0.72 +0.1
691,429 + MPMX19_05187 0.72 -1.2
691,429 + MPMX19_05187 0.72 +0.6
691,429 + MPMX19_05187 0.72 +0.1
691,429 + MPMX19_05187 0.72 +0.9
691,429 + MPMX19_05187 0.72 -0.1
691,429 + MPMX19_05187 0.72 +0.1
691,984 + MPMX19_05188 0.46 +0.2
691,984 + MPMX19_05188 0.46 -0.6
691,984 + MPMX19_05188 0.46 -1.0
691,985 - MPMX19_05188 0.46 -0.2
692,110 + MPMX19_05188 0.62 -1.8
692,110 + MPMX19_05188 0.62 +0.6
692,111 - MPMX19_05188 0.62 -2.3
692,410 - -1.5
692,557 - MPMX19_05189 0.14 -0.4
692,557 - MPMX19_05189 0.14 -0.0

Or see this region's nucleotide sequence