Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05174

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05173 and MPMX19_05174 are separated by 46 nucleotidesMPMX19_05174 and MPMX19_05175 are separated by 30 nucleotides MPMX19_05173: MPMX19_05173 - hypothetical protein, at 676,248 to 677,225 _05173 MPMX19_05174: MPMX19_05174 - Putative acyl-CoA dehydrogenase YdbM, at 677,272 to 678,477 _05174 MPMX19_05175: MPMX19_05175 - hypothetical protein, at 678,508 to 679,524 _05175 Position (kb) 677 678 679Strain fitness (log2 ratio) -2 -1 0 1at 676.772 kb on + strand, within MPMX19_05173at 676.772 kb on + strand, within MPMX19_05173at 676.773 kb on - strand, within MPMX19_05173at 676.849 kb on + strand, within MPMX19_05173at 676.850 kb on - strand, within MPMX19_05173at 676.950 kb on + strand, within MPMX19_05173at 676.950 kb on + strand, within MPMX19_05173at 676.950 kb on + strand, within MPMX19_05173at 676.950 kb on + strand, within MPMX19_05173at 676.951 kb on - strand, within MPMX19_05173at 676.951 kb on - strand, within MPMX19_05173at 676.990 kb on + strand, within MPMX19_05173at 676.993 kb on - strand, within MPMX19_05173at 677.069 kb on - strand, within MPMX19_05173at 677.069 kb on - strand, within MPMX19_05173at 677.212 kb on - strandat 677.453 kb on + strand, within MPMX19_05174at 677.453 kb on + strand, within MPMX19_05174at 677.454 kb on - strand, within MPMX19_05174at 677.454 kb on - strand, within MPMX19_05174at 677.454 kb on - strand, within MPMX19_05174at 677.458 kb on + strand, within MPMX19_05174at 677.459 kb on - strand, within MPMX19_05174at 677.678 kb on + strand, within MPMX19_05174at 677.972 kb on + strand, within MPMX19_05174at 677.972 kb on + strand, within MPMX19_05174at 677.973 kb on - strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.596 kb on + strandat 678.596 kb on + strandat 678.596 kb on + strandat 678.596 kb on + strandat 678.707 kb on + strand, within MPMX19_05175at 678.707 kb on + strand, within MPMX19_05175at 678.707 kb on + strand, within MPMX19_05175at 678.707 kb on + strand, within MPMX19_05175at 678.707 kb on + strand, within MPMX19_05175at 678.708 kb on - strand, within MPMX19_05175at 678.708 kb on - strand, within MPMX19_05175at 678.708 kb on - strand, within MPMX19_05175at 678.708 kb on - strand, within MPMX19_05175at 678.708 kb on - strand, within MPMX19_05175at 678.708 kb on - strand, within MPMX19_05175at 678.737 kb on + strand, within MPMX19_05175at 678.738 kb on - strand, within MPMX19_05175

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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676,772 + MPMX19_05173 0.54 +1.1
676,772 + MPMX19_05173 0.54 -0.3
676,773 - MPMX19_05173 0.54 -1.9
676,849 + MPMX19_05173 0.61 -0.4
676,850 - MPMX19_05173 0.62 -0.0
676,950 + MPMX19_05173 0.72 -0.0
676,950 + MPMX19_05173 0.72 -1.7
676,950 + MPMX19_05173 0.72 -1.0
676,950 + MPMX19_05173 0.72 -0.6
676,951 - MPMX19_05173 0.72 -0.4
676,951 - MPMX19_05173 0.72 +0.6
676,990 + MPMX19_05173 0.76 +1.4
676,993 - MPMX19_05173 0.76 -1.0
677,069 - MPMX19_05173 0.84 +1.2
677,069 - MPMX19_05173 0.84 +0.6
677,212 - -1.2
677,453 + MPMX19_05174 0.15 -1.4
677,453 + MPMX19_05174 0.15 -0.2
677,454 - MPMX19_05174 0.15 -0.4
677,454 - MPMX19_05174 0.15 +0.1
677,454 - MPMX19_05174 0.15 +0.3
677,458 + MPMX19_05174 0.15 +0.9
677,459 - MPMX19_05174 0.16 +1.2
677,678 + MPMX19_05174 0.34 -1.1
677,972 + MPMX19_05174 0.58 -0.1
677,972 + MPMX19_05174 0.58 +0.9
677,973 - MPMX19_05174 0.58 -0.0
678,176 + MPMX19_05174 0.75 -0.7
678,176 + MPMX19_05174 0.75 -1.8
678,176 + MPMX19_05174 0.75 -0.6
678,176 + MPMX19_05174 0.75 +0.4
678,176 + MPMX19_05174 0.75 -0.9
678,176 + MPMX19_05174 0.75 -0.6
678,176 + MPMX19_05174 0.75 -0.3
678,176 + MPMX19_05174 0.75 +0.3
678,176 + MPMX19_05174 0.75 -0.4
678,176 + MPMX19_05174 0.75 +0.5
678,176 + MPMX19_05174 0.75 -2.7
678,176 + MPMX19_05174 0.75 +0.4
678,176 + MPMX19_05174 0.75 +0.4
678,176 + MPMX19_05174 0.75 +1.0
678,176 + MPMX19_05174 0.75 -0.2
678,176 + MPMX19_05174 0.75 -0.7
678,176 + MPMX19_05174 0.75 -0.2
678,177 - MPMX19_05174 0.75 +0.4
678,177 - MPMX19_05174 0.75 -0.4
678,177 - MPMX19_05174 0.75 +1.6
678,177 - MPMX19_05174 0.75 -0.7
678,177 - MPMX19_05174 0.75 -0.2
678,177 - MPMX19_05174 0.75 -0.8
678,177 - MPMX19_05174 0.75 +0.8
678,177 - MPMX19_05174 0.75 -1.8
678,177 - MPMX19_05174 0.75 +0.0
678,177 - MPMX19_05174 0.75 +0.2
678,177 - MPMX19_05174 0.75 -0.3
678,177 - MPMX19_05174 0.75 -1.2
678,177 - MPMX19_05174 0.75 -0.4
678,177 - MPMX19_05174 0.75 -1.8
678,177 - MPMX19_05174 0.75 -1.4
678,177 - MPMX19_05174 0.75 -0.2
678,177 - MPMX19_05174 0.75 -1.0
678,177 - MPMX19_05174 0.75 +0.2
678,177 - MPMX19_05174 0.75 +0.6
678,177 - MPMX19_05174 0.75 -0.0
678,177 - MPMX19_05174 0.75 +0.3
678,177 - MPMX19_05174 0.75 -0.0
678,177 - MPMX19_05174 0.75 +0.6
678,177 - MPMX19_05174 0.75 +0.6
678,177 - MPMX19_05174 0.75 +1.0
678,596 + +0.9
678,596 + -1.4
678,596 + +0.6
678,596 + +1.0
678,707 + MPMX19_05175 0.20 -1.2
678,707 + MPMX19_05175 0.20 +0.4
678,707 + MPMX19_05175 0.20 +0.2
678,707 + MPMX19_05175 0.20 +0.2
678,707 + MPMX19_05175 0.20 +0.0
678,708 - MPMX19_05175 0.20 -0.9
678,708 - MPMX19_05175 0.20 -0.0
678,708 - MPMX19_05175 0.20 -1.1
678,708 - MPMX19_05175 0.20 -0.1
678,708 - MPMX19_05175 0.20 -1.4
678,708 - MPMX19_05175 0.20 +0.6
678,737 + MPMX19_05175 0.23 -0.8
678,738 - MPMX19_05175 0.23 -0.6

Or see this region's nucleotide sequence