Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05152

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05151 and MPMX19_05152 are separated by 29 nucleotidesMPMX19_05152 and MPMX19_05153 are separated by 32 nucleotides MPMX19_05151: MPMX19_05151 - 2-aminoethylphosphonate--pyruvate transaminase, at 648,246 to 649,364 _05151 MPMX19_05152: MPMX19_05152 - Phosphonoacetaldehyde hydrolase, at 649,394 to 650,224 _05152 MPMX19_05153: MPMX19_05153 - 4-methylaminobutanoate oxidase (formaldehyde-forming), at 650,257 to 651,483 _05153 Position (kb) 649 650 651Strain fitness (log2 ratio) -2 -1 0 1 2at 648.519 kb on + strand, within MPMX19_05151at 648.519 kb on + strand, within MPMX19_05151at 648.520 kb on - strand, within MPMX19_05151at 648.520 kb on - strand, within MPMX19_05151at 649.194 kb on + strand, within MPMX19_05151at 649.194 kb on + strand, within MPMX19_05151at 649.194 kb on + strand, within MPMX19_05151at 649.194 kb on + strand, within MPMX19_05151at 649.194 kb on + strand, within MPMX19_05151at 649.195 kb on - strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.228 kb on - strand, within MPMX19_05151at 649.406 kb on + strandat 649.407 kb on - strandat 649.419 kb on - strandat 649.419 kb on - strandat 649.419 kb on - strandat 649.419 kb on - strandat 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.674 kb on - strand, within MPMX19_05152at 649.674 kb on - strand, within MPMX19_05152at 649.674 kb on - strand, within MPMX19_05152at 649.848 kb on - strand, within MPMX19_05152at 650.144 kb on + strandat 650.144 kb on + strandat 650.144 kb on + strandat 650.144 kb on + strandat 650.144 kb on + strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.538 kb on + strand, within MPMX19_05153at 650.538 kb on + strand, within MPMX19_05153at 650.539 kb on - strand, within MPMX19_05153at 650.539 kb on - strand, within MPMX19_05153at 650.935 kb on + strand, within MPMX19_05153at 650.936 kb on - strand, within MPMX19_05153at 650.936 kb on - strand, within MPMX19_05153at 650.936 kb on - strand, within MPMX19_05153at 651.010 kb on + strand, within MPMX19_05153at 651.010 kb on + strand, within MPMX19_05153at 651.010 kb on + strand, within MPMX19_05153at 651.010 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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648,519 + MPMX19_05151 0.24 -1.1
648,519 + MPMX19_05151 0.24 +0.2
648,520 - MPMX19_05151 0.24 -0.0
648,520 - MPMX19_05151 0.24 +0.1
649,194 + MPMX19_05151 0.85 +0.0
649,194 + MPMX19_05151 0.85 +0.3
649,194 + MPMX19_05151 0.85 +0.4
649,194 + MPMX19_05151 0.85 -0.9
649,194 + MPMX19_05151 0.85 -0.8
649,195 - MPMX19_05151 0.85 +0.2
649,227 + MPMX19_05151 0.88 -0.3
649,227 + MPMX19_05151 0.88 -1.0
649,227 + MPMX19_05151 0.88 -0.0
649,227 + MPMX19_05151 0.88 -0.8
649,227 + MPMX19_05151 0.88 +0.8
649,227 + MPMX19_05151 0.88 -1.4
649,227 + MPMX19_05151 0.88 -0.1
649,228 - MPMX19_05151 0.88 -0.0
649,406 + +0.2
649,407 - -1.6
649,419 - -0.8
649,419 - -0.8
649,419 - -1.5
649,419 - -1.3
649,673 + MPMX19_05152 0.34 -0.0
649,673 + MPMX19_05152 0.34 -1.4
649,673 + MPMX19_05152 0.34 -0.9
649,673 + MPMX19_05152 0.34 -0.3
649,673 + MPMX19_05152 0.34 -0.9
649,673 + MPMX19_05152 0.34 -0.6
649,674 - MPMX19_05152 0.34 +0.6
649,674 - MPMX19_05152 0.34 -1.0
649,674 - MPMX19_05152 0.34 -0.4
649,848 - MPMX19_05152 0.55 -0.5
650,144 + -0.6
650,144 + -0.8
650,144 + -0.5
650,144 + +0.8
650,144 + -1.2
650,145 - +0.5
650,145 - -0.6
650,145 - -1.0
650,145 - +0.6
650,145 - -0.8
650,145 - -0.2
650,145 - -0.2
650,145 - -0.1
650,467 + MPMX19_05153 0.17 -0.0
650,467 + MPMX19_05153 0.17 -0.8
650,467 + MPMX19_05153 0.17 -1.6
650,467 + MPMX19_05153 0.17 +1.4
650,467 + MPMX19_05153 0.17 -2.0
650,467 + MPMX19_05153 0.17 -2.1
650,467 + MPMX19_05153 0.17 -0.4
650,467 + MPMX19_05153 0.17 +1.2
650,467 + MPMX19_05153 0.17 -0.4
650,467 + MPMX19_05153 0.17 +0.3
650,467 + MPMX19_05153 0.17 -0.0
650,467 + MPMX19_05153 0.17 -0.6
650,468 - MPMX19_05153 0.17 -1.0
650,468 - MPMX19_05153 0.17 +0.6
650,468 - MPMX19_05153 0.17 -0.8
650,468 - MPMX19_05153 0.17 -1.2
650,468 - MPMX19_05153 0.17 -1.2
650,468 - MPMX19_05153 0.17 +0.1
650,468 - MPMX19_05153 0.17 -1.4
650,468 - MPMX19_05153 0.17 +1.9
650,468 - MPMX19_05153 0.17 -0.2
650,468 - MPMX19_05153 0.17 -2.1
650,538 + MPMX19_05153 0.23 -0.8
650,538 + MPMX19_05153 0.23 -1.0
650,539 - MPMX19_05153 0.23 +0.6
650,539 - MPMX19_05153 0.23 -0.4
650,935 + MPMX19_05153 0.55 +1.6
650,936 - MPMX19_05153 0.55 -2.3
650,936 - MPMX19_05153 0.55 -1.1
650,936 - MPMX19_05153 0.55 +0.6
651,010 + MPMX19_05153 0.61 -0.6
651,010 + MPMX19_05153 0.61 -1.3
651,010 + MPMX19_05153 0.61 -0.1
651,010 + MPMX19_05153 0.61 +0.3
651,208 + MPMX19_05153 0.78 +0.2
651,208 + MPMX19_05153 0.78 -0.7
651,208 + MPMX19_05153 0.78 +1.2
651,208 + MPMX19_05153 0.78 -0.2
651,208 + MPMX19_05153 0.78 -1.6
651,208 + MPMX19_05153 0.78 +0.4
651,208 + MPMX19_05153 0.78 +0.2
651,208 + MPMX19_05153 0.78 +0.2
651,208 + MPMX19_05153 0.78 +0.5
651,208 + MPMX19_05153 0.78 -0.0
651,209 - MPMX19_05153 0.78 -1.4
651,209 - MPMX19_05153 0.78 -1.0
651,209 - MPMX19_05153 0.78 -1.0
651,209 - MPMX19_05153 0.78 -1.2
651,209 - MPMX19_05153 0.78 +0.6
651,209 - MPMX19_05153 0.78 -0.2
651,209 - MPMX19_05153 0.78 -1.5
651,209 - MPMX19_05153 0.78 +1.0
651,209 - MPMX19_05153 0.78 +0.2
651,209 - MPMX19_05153 0.78 -1.5
651,209 - MPMX19_05153 0.78 -0.9
651,209 - MPMX19_05153 0.78 -0.3

Or see this region's nucleotide sequence