Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05118 and MPMX19_05119 are separated by 138 nucleotides MPMX19_05119 and MPMX19_05120 are separated by 456 nucleotides
MPMX19_05118: MPMX19_05118 - Phosphogluconate dehydratase, at 603,292 to 605,130
_05118
MPMX19_05119: MPMX19_05119 - Glucose-6-phosphate 1-dehydrogenase, at 605,269 to 606,789
_05119
MPMX19_05120: MPMX19_05120 - 16S ribosomal RNA, at 607,246 to 608,729
_05120
Position (kb) 605
606
607 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 605.317 kb on + strand at 605.317 kb on + strand at 605.317 kb on + strand at 605.317 kb on + strand at 605.318 kb on - strand at 605.318 kb on - strand at 605.318 kb on - strand at 605.318 kb on - strand at 605.318 kb on - strand at 605.318 kb on - strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.374 kb on + strand at 605.374 kb on + strand at 605.374 kb on + strand at 605.374 kb on + strand at 605.374 kb on + strand at 605.374 kb on + strand at 605.374 kb on + strand at 605.374 kb on + strand at 605.375 kb on - strand at 605.375 kb on - strand at 605.375 kb on - strand at 605.375 kb on - strand at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.549 kb on - strand, within MPMX19_05119 at 605.549 kb on - strand, within MPMX19_05119 at 605.549 kb on - strand, within MPMX19_05119 at 605.549 kb on - strand, within MPMX19_05119 at 605.549 kb on - strand, within MPMX19_05119 at 605.549 kb on - strand, within MPMX19_05119 at 605.549 kb on - strand, within MPMX19_05119 at 605.549 kb on - strand, within MPMX19_05119 at 605.549 kb on - strand, within MPMX19_05119 at 605.549 kb on - strand, within MPMX19_05119 at 605.647 kb on + strand, within MPMX19_05119 at 605.647 kb on + strand, within MPMX19_05119 at 605.647 kb on + strand, within MPMX19_05119 at 605.647 kb on + strand, within MPMX19_05119 at 605.648 kb on - strand, within MPMX19_05119 at 605.648 kb on - strand, within MPMX19_05119 at 605.648 kb on - strand, within MPMX19_05119 at 605.648 kb on - strand, within MPMX19_05119 at 605.818 kb on + strand, within MPMX19_05119 at 605.819 kb on - strand, within MPMX19_05119 at 605.833 kb on + strand, within MPMX19_05119 at 605.833 kb on + strand, within MPMX19_05119 at 605.833 kb on + strand, within MPMX19_05119 at 605.833 kb on + strand, within MPMX19_05119 at 605.833 kb on + strand, within MPMX19_05119 at 605.834 kb on - strand, within MPMX19_05119 at 605.834 kb on - strand, within MPMX19_05119 at 605.834 kb on - strand, within MPMX19_05119 at 605.834 kb on - strand, within MPMX19_05119 at 605.834 kb on - strand, within MPMX19_05119 at 605.834 kb on - strand, within MPMX19_05119 at 605.842 kb on - strand, within MPMX19_05119 at 605.974 kb on + strand, within MPMX19_05119 at 605.975 kb on - strand, within MPMX19_05119 at 605.975 kb on - strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 606.164 kb on - strand, within MPMX19_05119 at 606.164 kb on - strand, within MPMX19_05119 at 606.202 kb on + strand, within MPMX19_05119 at 606.203 kb on - strand, within MPMX19_05119 at 606.273 kb on + strand, within MPMX19_05119 at 606.273 kb on + strand, within MPMX19_05119 at 606.273 kb on + strand, within MPMX19_05119 at 606.274 kb on - strand, within MPMX19_05119 at 606.274 kb on - strand, within MPMX19_05119 at 606.274 kb on - strand, within MPMX19_05119 at 606.274 kb on - strand, within MPMX19_05119 at 606.274 kb on - strand, within MPMX19_05119 at 606.301 kb on + strand, within MPMX19_05119 at 606.301 kb on + strand, within MPMX19_05119 at 606.301 kb on + strand, within MPMX19_05119 at 606.301 kb on + strand, within MPMX19_05119 at 606.301 kb on + strand, within MPMX19_05119 at 606.301 kb on + strand, within MPMX19_05119 at 606.302 kb on - strand, within MPMX19_05119 at 606.302 kb on - strand, within MPMX19_05119 at 606.302 kb on - strand, within MPMX19_05119 at 606.302 kb on - strand, within MPMX19_05119 at 606.302 kb on - strand, within MPMX19_05119 at 606.302 kb on - strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.556 kb on + strand, within MPMX19_05119 at 606.556 kb on + strand, within MPMX19_05119 at 606.556 kb on + strand, within MPMX19_05119 at 606.556 kb on + strand, within MPMX19_05119 at 606.556 kb on + strand, within MPMX19_05119 at 606.556 kb on + strand, within MPMX19_05119 at 606.556 kb on + strand, within MPMX19_05119 at 606.556 kb on + strand, within MPMX19_05119 at 606.556 kb on + strand, within MPMX19_05119 at 606.556 kb on + strand, within MPMX19_05119 at 606.557 kb on - strand, within MPMX19_05119 at 606.557 kb on - strand, within MPMX19_05119 at 606.557 kb on - strand, within MPMX19_05119 at 606.557 kb on - strand, within MPMX19_05119 at 606.557 kb on - strand, within MPMX19_05119 at 606.557 kb on - strand, within MPMX19_05119 at 606.691 kb on + strand at 606.691 kb on + strand at 606.691 kb on + strand at 606.691 kb on + strand at 606.691 kb on + strand at 606.691 kb on + strand at 606.691 kb on + strand at 606.691 kb on + strand at 606.691 kb on + strand at 606.691 kb on + strand at 606.691 kb on + strand at 606.691 kb on + strand at 606.692 kb on - strand at 606.692 kb on - strand at 606.692 kb on - strand at 606.692 kb on - strand at 606.693 kb on + strand at 606.693 kb on + strand at 606.694 kb on - strand at 606.694 kb on - strand at 606.694 kb on - strand at 606.694 kb on - strand at 606.892 kb on - strand at 606.892 kb on - strand at 606.892 kb on - strand at 606.892 kb on - strand at 606.892 kb on - strand at 606.892 kb on - strand at 606.892 kb on - strand at 606.892 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 605,317 + -0.0 605,317 + -0.4 605,317 + -1.4 605,317 + -3.4 605,318 - -1.0 605,318 - -0.4 605,318 - -1.4 605,318 - +0.2 605,318 - +0.1 605,318 - -1.4 605,319 + -0.0 605,319 + -0.7 605,319 + +0.7 605,319 + +1.8 605,319 + -1.8 605,319 + +0.2 605,319 + +0.6 605,319 + -0.0 605,319 + -0.2 605,319 + +0.6 605,319 + +1.0 605,319 + +0.1 605,319 + -1.8 605,319 + -0.3 605,319 + -0.0 605,319 + -1.8 605,319 + +0.7 605,320 - -0.6 605,320 - +0.9 605,320 - -1.0 605,320 - +1.2 605,320 - -1.8 605,320 - -0.2 605,320 - +0.7 605,320 - -0.6 605,320 - -1.8 605,320 - -0.4 605,320 - +0.4 605,320 - -0.8 605,320 - -2.1 605,320 - -2.0 605,320 - -2.5 605,320 - +2.2 605,374 + -1.0 605,374 + -1.0 605,374 + -1.4 605,374 + +1.6 605,374 + -0.5 605,374 + -0.8 605,374 + -1.2 605,374 + -0.3 605,375 - -1.3 605,375 - +1.2 605,375 - -0.4 605,375 - -0.3 605,548 + MPMX19_05119 0.18 -1.0 605,548 + MPMX19_05119 0.18 -0.6 605,548 + MPMX19_05119 0.18 -1.1 605,548 + MPMX19_05119 0.18 -0.2 605,548 + MPMX19_05119 0.18 -1.0 605,548 + MPMX19_05119 0.18 -1.3 605,548 + MPMX19_05119 0.18 +0.8 605,548 + MPMX19_05119 0.18 -1.4 605,548 + MPMX19_05119 0.18 -1.2 605,548 + MPMX19_05119 0.18 -0.8 605,548 + MPMX19_05119 0.18 -1.4 605,548 + MPMX19_05119 0.18 +0.2 605,548 + MPMX19_05119 0.18 -0.6 605,548 + MPMX19_05119 0.18 -0.1 605,548 + MPMX19_05119 0.18 -0.2 605,548 + MPMX19_05119 0.18 -1.4 605,548 + MPMX19_05119 0.18 +0.3 605,548 + MPMX19_05119 0.18 -1.6 605,548 + MPMX19_05119 0.18 -1.2 605,549 - MPMX19_05119 0.18 -1.2 605,549 - MPMX19_05119 0.18 +0.8 605,549 - MPMX19_05119 0.18 -0.8 605,549 - MPMX19_05119 0.18 -0.0 605,549 - MPMX19_05119 0.18 -1.2 605,549 - MPMX19_05119 0.18 -0.4 605,549 - MPMX19_05119 0.18 -0.9 605,549 - MPMX19_05119 0.18 +0.8 605,549 - MPMX19_05119 0.18 -1.2 605,549 - MPMX19_05119 0.18 -1.4 605,647 + MPMX19_05119 0.25 -1.6 605,647 + MPMX19_05119 0.25 +2.6 605,647 + MPMX19_05119 0.25 -0.9 605,647 + MPMX19_05119 0.25 -1.5 605,648 - MPMX19_05119 0.25 -0.0 605,648 - MPMX19_05119 0.25 -1.8 605,648 - MPMX19_05119 0.25 -0.4 605,648 - MPMX19_05119 0.25 -0.8 605,818 + MPMX19_05119 0.36 -2.5 605,819 - MPMX19_05119 0.36 -2.6 605,833 + MPMX19_05119 0.37 -0.4 605,833 + MPMX19_05119 0.37 -1.9 605,833 + MPMX19_05119 0.37 +0.6 605,833 + MPMX19_05119 0.37 -0.4 605,833 + MPMX19_05119 0.37 -2.0 605,834 - MPMX19_05119 0.37 -2.1 605,834 - MPMX19_05119 0.37 -2.3 605,834 - MPMX19_05119 0.37 -0.5 605,834 - MPMX19_05119 0.37 -2.1 605,834 - MPMX19_05119 0.37 -0.2 605,834 - MPMX19_05119 0.37 -1.2 605,842 - MPMX19_05119 0.38 -1.3 605,974 + MPMX19_05119 0.46 +1.9 605,975 - MPMX19_05119 0.46 -1.1 605,975 - MPMX19_05119 0.46 -0.9 605,977 + MPMX19_05119 0.47 -0.9 605,977 + MPMX19_05119 0.47 -0.8 605,977 + MPMX19_05119 0.47 -1.4 605,977 + MPMX19_05119 0.47 -1.2 605,977 + MPMX19_05119 0.47 -1.5 605,977 + MPMX19_05119 0.47 -1.2 605,977 + MPMX19_05119 0.47 -0.0 605,977 + MPMX19_05119 0.47 -0.3 605,977 + MPMX19_05119 0.47 -0.6 605,977 + MPMX19_05119 0.47 -2.2 605,977 + MPMX19_05119 0.47 -1.4 605,977 + MPMX19_05119 0.47 -0.5 605,977 + MPMX19_05119 0.47 -0.4 605,977 + MPMX19_05119 0.47 -1.6 605,977 + MPMX19_05119 0.47 -1.4 605,977 + MPMX19_05119 0.47 +1.1 605,978 - MPMX19_05119 0.47 -1.3 605,978 - MPMX19_05119 0.47 -1.4 605,978 - MPMX19_05119 0.47 -2.1 605,978 - MPMX19_05119 0.47 +0.6 605,978 - MPMX19_05119 0.47 -0.0 605,978 - MPMX19_05119 0.47 -0.3 605,978 - MPMX19_05119 0.47 -1.4 605,978 - MPMX19_05119 0.47 +0.2 605,978 - MPMX19_05119 0.47 -1.4 605,978 - MPMX19_05119 0.47 -1.0 605,978 - MPMX19_05119 0.47 -2.2 605,978 - MPMX19_05119 0.47 -0.0 605,978 - MPMX19_05119 0.47 -0.2 605,978 - MPMX19_05119 0.47 -1.2 605,978 - MPMX19_05119 0.47 -1.8 605,978 - MPMX19_05119 0.47 -1.1 605,978 - MPMX19_05119 0.47 -2.9 605,978 - MPMX19_05119 0.47 -0.4 605,978 - MPMX19_05119 0.47 -1.8 606,164 - MPMX19_05119 0.59 -1.2 606,164 - MPMX19_05119 0.59 +0.6 606,202 + MPMX19_05119 0.61 -2.2 606,203 - MPMX19_05119 0.61 +0.2 606,273 + MPMX19_05119 0.66 +0.7 606,273 + MPMX19_05119 0.66 -0.1 606,273 + MPMX19_05119 0.66 +0.8 606,274 - MPMX19_05119 0.66 -1.4 606,274 - MPMX19_05119 0.66 -1.0 606,274 - MPMX19_05119 0.66 +0.8 606,274 - MPMX19_05119 0.66 -1.1 606,274 - MPMX19_05119 0.66 -0.0 606,301 + MPMX19_05119 0.68 -1.0 606,301 + MPMX19_05119 0.68 +0.4 606,301 + MPMX19_05119 0.68 -0.4 606,301 + MPMX19_05119 0.68 -0.0 606,301 + MPMX19_05119 0.68 -0.8 606,301 + MPMX19_05119 0.68 -0.0 606,302 - MPMX19_05119 0.68 -1.4 606,302 - MPMX19_05119 0.68 -1.5 606,302 - MPMX19_05119 0.68 +0.3 606,302 - MPMX19_05119 0.68 -0.0 606,302 - MPMX19_05119 0.68 +0.8 606,302 - MPMX19_05119 0.68 +0.7 606,401 + MPMX19_05119 0.74 +0.3 606,401 + MPMX19_05119 0.74 +1.0 606,401 + MPMX19_05119 0.74 -0.4 606,401 + MPMX19_05119 0.74 -1.0 606,401 + MPMX19_05119 0.74 -0.8 606,401 + MPMX19_05119 0.74 -0.8 606,401 + MPMX19_05119 0.74 -1.5 606,401 + MPMX19_05119 0.74 -0.9 606,401 + MPMX19_05119 0.74 -1.2 606,401 + MPMX19_05119 0.74 -0.8 606,401 + MPMX19_05119 0.74 -0.4 606,401 + MPMX19_05119 0.74 -1.8 606,402 - MPMX19_05119 0.74 -0.9 606,402 - MPMX19_05119 0.74 +0.3 606,402 - MPMX19_05119 0.74 +0.9 606,402 - MPMX19_05119 0.74 -0.9 606,402 - MPMX19_05119 0.74 -0.9 606,402 - MPMX19_05119 0.74 +0.1 606,402 - MPMX19_05119 0.74 -2.1 606,402 - MPMX19_05119 0.74 -0.4 606,402 - MPMX19_05119 0.74 -1.5 606,402 - MPMX19_05119 0.74 -2.1 606,402 - MPMX19_05119 0.74 -1.0 606,402 - MPMX19_05119 0.74 -0.2 606,402 - MPMX19_05119 0.74 -1.9 606,556 + MPMX19_05119 0.85 -2.4 606,556 + MPMX19_05119 0.85 -1.6 606,556 + MPMX19_05119 0.85 -0.0 606,556 + MPMX19_05119 0.85 -0.8 606,556 + MPMX19_05119 0.85 +0.1 606,556 + MPMX19_05119 0.85 -1.3 606,556 + MPMX19_05119 0.85 -2.0 606,556 + MPMX19_05119 0.85 -1.2 606,556 + MPMX19_05119 0.85 -1.3 606,556 + MPMX19_05119 0.85 -0.4 606,557 - MPMX19_05119 0.85 -0.3 606,557 - MPMX19_05119 0.85 -2.4 606,557 - MPMX19_05119 0.85 -0.2 606,557 - MPMX19_05119 0.85 -1.0 606,557 - MPMX19_05119 0.85 -0.8 606,557 - MPMX19_05119 0.85 +0.2 606,691 + -0.5 606,691 + -0.0 606,691 + -1.6 606,691 + -1.9 606,691 + -0.4 606,691 + +0.1 606,691 + -1.1 606,691 + -0.1 606,691 + +0.2 606,691 + -0.6 606,691 + -1.3 606,691 + -1.9 606,692 - +0.5 606,692 - -0.3 606,692 - -0.8 606,692 - -0.2 606,693 + +0.1 606,693 + -1.8 606,694 - -0.0 606,694 - +0.6 606,694 - +0.3 606,694 - -1.8 606,892 - -1.2 606,892 - -1.0 606,892 - -0.1 606,892 - +1.0 606,892 - +0.2 606,892 - -0.7 606,892 - -0.6 606,892 - -1.0
Or see this region's nucleotide sequence