Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05103 and MPMX19_05104 are separated by 19 nucleotides MPMX19_05104 and MPMX19_05105 are separated by 93 nucleotides MPMX19_05105 and MPMX19_05106 overlap by 4 nucleotides MPMX19_05106 and MPMX19_05107 overlap by 4 nucleotides
MPMX19_05103: MPMX19_05103 - Intermembrane transport lipoprotein PqiC, at 590,975 to 591,574
_05103
MPMX19_05104: MPMX19_05104 - hypothetical protein, at 591,594 to 592,145
_05104
MPMX19_05105: MPMX19_05105 - Glycine betaine uptake system permease protein YehW, at 592,239 to 592,997
_05105
MPMX19_05106: MPMX19_05106 - Glycine betaine uptake system ATP-binding protein YehX, at 592,994 to 593,953
_05106
MPMX19_05107: MPMX19_05107 - Glycine betaine uptake system permease protein YehY, at 593,950 to 595,134
_05107
Position (kb) 592
593 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 591.572 kb on + strand at 591.572 kb on + strand at 591.573 kb on - strand at 591.584 kb on + strand at 591.584 kb on + strand at 591.585 kb on - strand at 591.683 kb on + strand, within MPMX19_05104 at 591.683 kb on + strand, within MPMX19_05104 at 591.683 kb on + strand, within MPMX19_05104 at 591.683 kb on + strand, within MPMX19_05104 at 591.683 kb on + strand, within MPMX19_05104 at 591.684 kb on - strand, within MPMX19_05104 at 591.684 kb on - strand, within MPMX19_05104 at 591.684 kb on - strand, within MPMX19_05104 at 592.179 kb on + strand at 592.179 kb on + strand at 592.179 kb on + strand at 592.179 kb on + strand at 592.179 kb on + strand at 592.179 kb on + strand at 592.180 kb on - strand at 592.180 kb on - strand at 592.180 kb on - strand at 592.180 kb on - strand at 592.180 kb on - strand at 592.180 kb on - strand at 592.339 kb on + strand, within MPMX19_05105 at 592.339 kb on + strand, within MPMX19_05105 at 592.339 kb on + strand, within MPMX19_05105 at 592.339 kb on + strand, within MPMX19_05105 at 592.339 kb on + strand, within MPMX19_05105 at 592.339 kb on + strand, within MPMX19_05105 at 592.339 kb on + strand, within MPMX19_05105 at 592.339 kb on + strand, within MPMX19_05105 at 592.339 kb on + strand, within MPMX19_05105 at 592.339 kb on + strand, within MPMX19_05105 at 592.339 kb on + strand, within MPMX19_05105 at 592.339 kb on + strand, within MPMX19_05105 at 592.339 kb on + strand, within MPMX19_05105 at 592.339 kb on + strand, within MPMX19_05105 at 592.339 kb on + strand, within MPMX19_05105 at 592.339 kb on + strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.340 kb on - strand, within MPMX19_05105 at 592.604 kb on - strand, within MPMX19_05105 at 592.815 kb on - strand, within MPMX19_05105 at 592.815 kb on - strand, within MPMX19_05105 at 592.815 kb on - strand, within MPMX19_05105 at 592.853 kb on - strand, within MPMX19_05105 at 592.853 kb on - strand, within MPMX19_05105 at 592.853 kb on - strand, within MPMX19_05105 at 593.559 kb on + strand, within MPMX19_05106 at 593.559 kb on + strand, within MPMX19_05106 at 593.560 kb on - strand, within MPMX19_05106 at 593.718 kb on + strand, within MPMX19_05106 at 593.718 kb on + strand, within MPMX19_05106 at 593.718 kb on + strand, within MPMX19_05106 at 593.718 kb on + strand, within MPMX19_05106 at 593.718 kb on + strand, within MPMX19_05106 at 593.718 kb on + strand, within MPMX19_05106 at 593.719 kb on - strand, within MPMX19_05106 at 593.719 kb on - strand, within MPMX19_05106 at 593.719 kb on - strand, within MPMX19_05106 at 593.719 kb on - strand, within MPMX19_05106 at 593.719 kb on - strand, within MPMX19_05106
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 591,572 + -0.0 591,572 + -0.1 591,573 - +1.6 591,584 + -0.2 591,584 + -0.7 591,585 - -1.0 591,683 + MPMX19_05104 0.16 +0.7 591,683 + MPMX19_05104 0.16 +1.2 591,683 + MPMX19_05104 0.16 +0.3 591,683 + MPMX19_05104 0.16 -1.2 591,683 + MPMX19_05104 0.16 +0.2 591,684 - MPMX19_05104 0.16 -0.1 591,684 - MPMX19_05104 0.16 +0.4 591,684 - MPMX19_05104 0.16 -1.2 592,179 + -1.5 592,179 + -0.7 592,179 + +0.4 592,179 + -0.1 592,179 + +0.6 592,179 + -1.0 592,180 - -0.4 592,180 - -0.0 592,180 - +0.2 592,180 - -1.0 592,180 - -0.7 592,180 - -2.9 592,339 + MPMX19_05105 0.13 -0.6 592,339 + MPMX19_05105 0.13 -0.1 592,339 + MPMX19_05105 0.13 -0.0 592,339 + MPMX19_05105 0.13 +0.6 592,339 + MPMX19_05105 0.13 +1.3 592,339 + MPMX19_05105 0.13 +0.8 592,339 + MPMX19_05105 0.13 -0.7 592,339 + MPMX19_05105 0.13 +1.3 592,339 + MPMX19_05105 0.13 -0.1 592,339 + MPMX19_05105 0.13 +1.0 592,339 + MPMX19_05105 0.13 -1.4 592,339 + MPMX19_05105 0.13 +0.8 592,339 + MPMX19_05105 0.13 -1.1 592,339 + MPMX19_05105 0.13 +0.3 592,339 + MPMX19_05105 0.13 -1.5 592,339 + MPMX19_05105 0.13 -1.7 592,340 - MPMX19_05105 0.13 -0.9 592,340 - MPMX19_05105 0.13 -0.6 592,340 - MPMX19_05105 0.13 -1.6 592,340 - MPMX19_05105 0.13 +0.6 592,340 - MPMX19_05105 0.13 -1.5 592,340 - MPMX19_05105 0.13 -0.6 592,340 - MPMX19_05105 0.13 -1.4 592,340 - MPMX19_05105 0.13 -1.2 592,340 - MPMX19_05105 0.13 +0.8 592,340 - MPMX19_05105 0.13 -1.4 592,340 - MPMX19_05105 0.13 -2.7 592,340 - MPMX19_05105 0.13 -0.7 592,340 - MPMX19_05105 0.13 -0.4 592,340 - MPMX19_05105 0.13 -1.9 592,340 - MPMX19_05105 0.13 -0.2 592,340 - MPMX19_05105 0.13 +1.1 592,340 - MPMX19_05105 0.13 -0.7 592,340 - MPMX19_05105 0.13 +0.4 592,340 - MPMX19_05105 0.13 -1.2 592,340 - MPMX19_05105 0.13 -1.7 592,340 - MPMX19_05105 0.13 -0.0 592,340 - MPMX19_05105 0.13 -0.5 592,340 - MPMX19_05105 0.13 -0.4 592,340 - MPMX19_05105 0.13 -0.8 592,340 - MPMX19_05105 0.13 +0.2 592,340 - MPMX19_05105 0.13 -0.7 592,340 - MPMX19_05105 0.13 -0.3 592,340 - MPMX19_05105 0.13 -1.5 592,340 - MPMX19_05105 0.13 -1.4 592,340 - MPMX19_05105 0.13 -1.0 592,604 - MPMX19_05105 0.48 +0.3 592,815 - MPMX19_05105 0.76 -0.9 592,815 - MPMX19_05105 0.76 -0.3 592,815 - MPMX19_05105 0.76 -1.0 592,853 - MPMX19_05105 0.81 -0.6 592,853 - MPMX19_05105 0.81 +0.1 592,853 - MPMX19_05105 0.81 +0.7 593,559 + MPMX19_05106 0.59 +0.5 593,559 + MPMX19_05106 0.59 -0.9 593,560 - MPMX19_05106 0.59 -1.7 593,718 + MPMX19_05106 0.75 -0.2 593,718 + MPMX19_05106 0.75 +1.1 593,718 + MPMX19_05106 0.75 -0.1 593,718 + MPMX19_05106 0.75 +0.1 593,718 + MPMX19_05106 0.75 -0.6 593,718 + MPMX19_05106 0.75 -0.4 593,719 - MPMX19_05106 0.76 -1.6 593,719 - MPMX19_05106 0.76 -1.0 593,719 - MPMX19_05106 0.76 +0.4 593,719 - MPMX19_05106 0.76 -2.0 593,719 - MPMX19_05106 0.76 -0.3
Or see this region's nucleotide sequence