Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05101

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05100 and MPMX19_05101 are separated by 232 nucleotidesMPMX19_05101 and MPMX19_05102 overlap by 8 nucleotides MPMX19_05100: MPMX19_05100 - hypothetical protein, at 586,867 to 587,730 _05100 MPMX19_05101: MPMX19_05101 - Intermembrane transport protein PqiA, at 587,963 to 589,258 _05101 MPMX19_05102: MPMX19_05102 - Intermembrane transport protein PqiB, at 589,251 to 590,954 _05102 Position (kb) 587 588 589 590Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 587.309 kb on + strand, within MPMX19_05100at 587.310 kb on - strand, within MPMX19_05100at 587.310 kb on - strand, within MPMX19_05100at 587.310 kb on - strand, within MPMX19_05100at 587.477 kb on + strand, within MPMX19_05100at 587.478 kb on - strand, within MPMX19_05100at 587.767 kb on - strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.772 kb on - strandat 587.775 kb on + strandat 587.775 kb on + strandat 587.776 kb on - strandat 587.776 kb on - strandat 587.776 kb on - strandat 587.776 kb on - strandat 587.776 kb on - strandat 587.780 kb on - strandat 587.849 kb on - strandat 587.849 kb on - strandat 587.881 kb on + strandat 587.881 kb on + strandat 587.881 kb on + strandat 587.882 kb on - strandat 587.882 kb on - strandat 587.882 kb on - strandat 587.882 kb on - strandat 588.455 kb on + strand, within MPMX19_05101at 588.466 kb on + strand, within MPMX19_05101at 588.466 kb on + strand, within MPMX19_05101at 588.466 kb on + strand, within MPMX19_05101at 588.466 kb on + strand, within MPMX19_05101at 588.467 kb on - strand, within MPMX19_05101at 588.467 kb on - strand, within MPMX19_05101at 588.467 kb on - strand, within MPMX19_05101at 588.467 kb on - strand, within MPMX19_05101at 588.467 kb on - strand, within MPMX19_05101at 588.770 kb on + strand, within MPMX19_05101at 588.770 kb on + strand, within MPMX19_05101at 588.770 kb on + strand, within MPMX19_05101at 588.770 kb on + strand, within MPMX19_05101at 588.770 kb on + strand, within MPMX19_05101at 588.770 kb on + strand, within MPMX19_05101at 588.770 kb on + strand, within MPMX19_05101at 588.770 kb on + strand, within MPMX19_05101at 588.770 kb on + strand, within MPMX19_05101at 588.770 kb on + strand, within MPMX19_05101at 588.770 kb on + strand, within MPMX19_05101at 588.771 kb on - strand, within MPMX19_05101at 588.771 kb on - strand, within MPMX19_05101at 588.771 kb on - strand, within MPMX19_05101at 588.771 kb on - strand, within MPMX19_05101at 588.771 kb on - strand, within MPMX19_05101at 588.771 kb on - strand, within MPMX19_05101at 588.771 kb on - strand, within MPMX19_05101at 588.771 kb on - strand, within MPMX19_05101at 588.771 kb on - strand, within MPMX19_05101at 588.771 kb on - strand, within MPMX19_05101at 588.771 kb on - strand, within MPMX19_05101at 588.771 kb on - strand, within MPMX19_05101at 588.771 kb on - strand, within MPMX19_05101at 588.771 kb on - strand, within MPMX19_05101at 588.888 kb on + strand, within MPMX19_05101at 588.888 kb on + strand, within MPMX19_05101at 588.889 kb on - strand, within MPMX19_05101at 588.889 kb on - strand, within MPMX19_05101at 588.889 kb on - strand, within MPMX19_05101at 589.004 kb on + strand, within MPMX19_05101at 589.004 kb on + strand, within MPMX19_05101at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.689 kb on + strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.690 kb on - strand, within MPMX19_05102at 589.836 kb on + strand, within MPMX19_05102at 589.837 kb on - strand, within MPMX19_05102at 589.837 kb on - strand, within MPMX19_05102at 589.872 kb on + strand, within MPMX19_05102at 589.872 kb on + strand, within MPMX19_05102at 589.872 kb on + strand, within MPMX19_05102at 589.872 kb on + strand, within MPMX19_05102at 589.872 kb on + strand, within MPMX19_05102at 589.872 kb on + strand, within MPMX19_05102at 589.872 kb on + strand, within MPMX19_05102at 589.872 kb on + strand, within MPMX19_05102at 589.872 kb on + strand, within MPMX19_05102at 589.872 kb on + strand, within MPMX19_05102at 589.872 kb on + strand, within MPMX19_05102at 589.873 kb on - strand, within MPMX19_05102at 589.873 kb on - strand, within MPMX19_05102at 589.873 kb on - strand, within MPMX19_05102at 589.873 kb on - strand, within MPMX19_05102at 589.873 kb on - strand, within MPMX19_05102at 589.873 kb on - strand, within MPMX19_05102at 589.873 kb on - strand, within MPMX19_05102at 589.873 kb on - strand, within MPMX19_05102at 589.873 kb on - strand, within MPMX19_05102at 589.873 kb on - strand, within MPMX19_05102at 589.873 kb on - strand, within MPMX19_05102at 589.873 kb on - strand, within MPMX19_05102at 589.929 kb on + strand, within MPMX19_05102at 589.929 kb on + strand, within MPMX19_05102at 589.930 kb on - strand, within MPMX19_05102at 589.930 kb on - strand, within MPMX19_05102at 589.930 kb on - strand, within MPMX19_05102at 589.930 kb on - strand, within MPMX19_05102at 589.930 kb on - strand, within MPMX19_05102at 589.930 kb on - strand, within MPMX19_05102at 590.118 kb on + strand, within MPMX19_05102at 590.118 kb on + strand, within MPMX19_05102at 590.169 kb on + strand, within MPMX19_05102

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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587,309 + MPMX19_05100 0.51 -0.1
587,310 - MPMX19_05100 0.51 -0.4
587,310 - MPMX19_05100 0.51 -1.8
587,310 - MPMX19_05100 0.51 -0.8
587,477 + MPMX19_05100 0.71 -0.0
587,478 - MPMX19_05100 0.71 -0.2
587,767 - -0.3
587,771 + -0.3
587,771 + -1.6
587,771 + -1.4
587,771 + +1.0
587,771 + -0.2
587,771 + -1.9
587,771 + -0.9
587,771 + -1.9
587,771 + -0.7
587,771 + -1.6
587,771 + -0.2
587,771 + +0.2
587,771 + +1.2
587,771 + +0.4
587,771 + -1.7
587,771 + -0.2
587,771 + -1.9
587,771 + -1.2
587,771 + -0.4
587,771 + -0.9
587,771 + -0.7
587,771 + -0.4
587,772 - -0.4
587,772 - +0.6
587,772 - -0.3
587,772 - -0.4
587,772 - +0.9
587,772 - -1.6
587,772 - -1.7
587,772 - -1.6
587,772 - -2.2
587,772 - -0.0
587,772 - -0.6
587,772 - +0.4
587,772 - -0.5
587,772 - +0.4
587,772 - -0.6
587,772 - -2.7
587,772 - -1.6
587,772 - -0.9
587,772 - -0.3
587,772 - +0.4
587,775 + -0.4
587,775 + -1.5
587,776 - +0.1
587,776 - -0.6
587,776 - +1.2
587,776 - -1.2
587,776 - -0.5
587,780 - +0.4
587,849 - -0.9
587,849 - -0.5
587,881 + -1.0
587,881 + -0.3
587,881 + -0.2
587,882 - -0.8
587,882 - -1.4
587,882 - -0.4
587,882 - -0.5
588,455 + MPMX19_05101 0.38 +0.4
588,466 + MPMX19_05101 0.39 +0.8
588,466 + MPMX19_05101 0.39 -0.4
588,466 + MPMX19_05101 0.39 -3.1
588,466 + MPMX19_05101 0.39 -0.7
588,467 - MPMX19_05101 0.39 -1.4
588,467 - MPMX19_05101 0.39 -1.2
588,467 - MPMX19_05101 0.39 +0.7
588,467 - MPMX19_05101 0.39 -0.6
588,467 - MPMX19_05101 0.39 -0.8
588,770 + MPMX19_05101 0.62 +0.2
588,770 + MPMX19_05101 0.62 -0.5
588,770 + MPMX19_05101 0.62 -0.7
588,770 + MPMX19_05101 0.62 -1.4
588,770 + MPMX19_05101 0.62 -1.4
588,770 + MPMX19_05101 0.62 -0.0
588,770 + MPMX19_05101 0.62 +0.1
588,770 + MPMX19_05101 0.62 -0.1
588,770 + MPMX19_05101 0.62 +2.0
588,770 + MPMX19_05101 0.62 -0.2
588,770 + MPMX19_05101 0.62 +0.2
588,771 - MPMX19_05101 0.62 -0.0
588,771 - MPMX19_05101 0.62 -0.4
588,771 - MPMX19_05101 0.62 -0.8
588,771 - MPMX19_05101 0.62 -0.3
588,771 - MPMX19_05101 0.62 -0.9
588,771 - MPMX19_05101 0.62 -0.6
588,771 - MPMX19_05101 0.62 -1.9
588,771 - MPMX19_05101 0.62 -1.2
588,771 - MPMX19_05101 0.62 -0.1
588,771 - MPMX19_05101 0.62 +0.3
588,771 - MPMX19_05101 0.62 -1.3
588,771 - MPMX19_05101 0.62 -1.6
588,771 - MPMX19_05101 0.62 -0.0
588,771 - MPMX19_05101 0.62 +0.6
588,888 + MPMX19_05101 0.71 -0.8
588,888 + MPMX19_05101 0.71 -0.8
588,889 - MPMX19_05101 0.71 -2.0
588,889 - MPMX19_05101 0.71 -0.6
588,889 - MPMX19_05101 0.71 -1.3
589,004 + MPMX19_05101 0.80 -0.1
589,004 + MPMX19_05101 0.80 -0.4
589,689 + MPMX19_05102 0.26 -0.3
589,689 + MPMX19_05102 0.26 -0.6
589,689 + MPMX19_05102 0.26 -0.4
589,689 + MPMX19_05102 0.26 +1.3
589,689 + MPMX19_05102 0.26 -0.3
589,689 + MPMX19_05102 0.26 -1.1
589,689 + MPMX19_05102 0.26 +1.2
589,689 + MPMX19_05102 0.26 -2.1
589,689 + MPMX19_05102 0.26 -0.8
589,689 + MPMX19_05102 0.26 -0.9
589,689 + MPMX19_05102 0.26 +0.1
589,689 + MPMX19_05102 0.26 -0.4
589,689 + MPMX19_05102 0.26 -0.0
589,689 + MPMX19_05102 0.26 -0.4
589,689 + MPMX19_05102 0.26 +0.1
589,689 + MPMX19_05102 0.26 -0.4
589,689 + MPMX19_05102 0.26 -0.1
589,689 + MPMX19_05102 0.26 +0.6
589,689 + MPMX19_05102 0.26 -0.9
589,689 + MPMX19_05102 0.26 -0.6
589,689 + MPMX19_05102 0.26 -0.5
589,689 + MPMX19_05102 0.26 -0.2
589,689 + MPMX19_05102 0.26 -0.3
589,689 + MPMX19_05102 0.26 -1.0
589,689 + MPMX19_05102 0.26 -0.3
589,689 + MPMX19_05102 0.26 +1.0
589,689 + MPMX19_05102 0.26 -0.4
589,689 + MPMX19_05102 0.26 +1.0
589,690 - MPMX19_05102 0.26 +0.3
589,690 - MPMX19_05102 0.26 +0.8
589,690 - MPMX19_05102 0.26 -2.4
589,690 - MPMX19_05102 0.26 +0.1
589,690 - MPMX19_05102 0.26 +0.6
589,690 - MPMX19_05102 0.26 -0.0
589,690 - MPMX19_05102 0.26 +0.2
589,690 - MPMX19_05102 0.26 -0.3
589,690 - MPMX19_05102 0.26 -0.2
589,690 - MPMX19_05102 0.26 -0.6
589,690 - MPMX19_05102 0.26 -1.0
589,690 - MPMX19_05102 0.26 +0.4
589,690 - MPMX19_05102 0.26 -1.2
589,690 - MPMX19_05102 0.26 -0.3
589,690 - MPMX19_05102 0.26 -0.0
589,690 - MPMX19_05102 0.26 +0.1
589,690 - MPMX19_05102 0.26 +1.0
589,690 - MPMX19_05102 0.26 -0.2
589,690 - MPMX19_05102 0.26 +0.4
589,690 - MPMX19_05102 0.26 -0.4
589,690 - MPMX19_05102 0.26 -0.0
589,690 - MPMX19_05102 0.26 -0.5
589,690 - MPMX19_05102 0.26 -1.2
589,690 - MPMX19_05102 0.26 -0.0
589,690 - MPMX19_05102 0.26 -0.1
589,690 - MPMX19_05102 0.26 -1.5
589,690 - MPMX19_05102 0.26 -0.6
589,690 - MPMX19_05102 0.26 -0.2
589,690 - MPMX19_05102 0.26 -0.7
589,836 + MPMX19_05102 0.34 +0.3
589,837 - MPMX19_05102 0.34 -0.0
589,837 - MPMX19_05102 0.34 -2.0
589,872 + MPMX19_05102 0.36 -0.8
589,872 + MPMX19_05102 0.36 -0.2
589,872 + MPMX19_05102 0.36 -0.2
589,872 + MPMX19_05102 0.36 +0.4
589,872 + MPMX19_05102 0.36 -0.9
589,872 + MPMX19_05102 0.36 -1.0
589,872 + MPMX19_05102 0.36 -1.7
589,872 + MPMX19_05102 0.36 +0.1
589,872 + MPMX19_05102 0.36 -1.1
589,872 + MPMX19_05102 0.36 -0.2
589,872 + MPMX19_05102 0.36 +1.6
589,873 - MPMX19_05102 0.37 -1.4
589,873 - MPMX19_05102 0.37 +0.8
589,873 - MPMX19_05102 0.37 -1.2
589,873 - MPMX19_05102 0.37 -0.9
589,873 - MPMX19_05102 0.37 -1.9
589,873 - MPMX19_05102 0.37 -0.5
589,873 - MPMX19_05102 0.37 -0.0
589,873 - MPMX19_05102 0.37 -1.0
589,873 - MPMX19_05102 0.37 +0.1
589,873 - MPMX19_05102 0.37 -0.9
589,873 - MPMX19_05102 0.37 -0.0
589,873 - MPMX19_05102 0.37 +0.9
589,929 + MPMX19_05102 0.40 -0.0
589,929 + MPMX19_05102 0.40 -0.6
589,930 - MPMX19_05102 0.40 -0.8
589,930 - MPMX19_05102 0.40 -0.9
589,930 - MPMX19_05102 0.40 +0.6
589,930 - MPMX19_05102 0.40 +0.7
589,930 - MPMX19_05102 0.40 +0.6
589,930 - MPMX19_05102 0.40 -0.7
590,118 + MPMX19_05102 0.51 -0.9
590,118 + MPMX19_05102 0.51 -0.0
590,169 + MPMX19_05102 0.54 -1.5

Or see this region's nucleotide sequence