Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05047

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05046 and MPMX19_05047 are separated by 127 nucleotidesMPMX19_05047 and MPMX19_05048 are separated by 63 nucleotidesMPMX19_05048 and MPMX19_05049 overlap by 14 nucleotidesMPMX19_05049 and MPMX19_05050 are separated by 5 nucleotides MPMX19_05046: MPMX19_05046 - Acetolactate synthase isozyme 2 large subunit, at 530,678 to 532,336 _05046 MPMX19_05047: MPMX19_05047 - Glycine cleavage system transcriptional activator, at 532,464 to 533,360 _05047 MPMX19_05048: MPMX19_05048 - hypothetical protein, at 533,424 to 533,720 _05048 MPMX19_05049: MPMX19_05049 - hypothetical protein, at 533,707 to 534,069 _05049 MPMX19_05050: MPMX19_05050 - Inner membrane ABC transporter ATP-binding protein YddA, at 534,075 to 535,871 _05050 Position (kb) 532 533 534Strain fitness (log2 ratio) -2 -1 0 1 2at 531.492 kb on + strand, within MPMX19_05046at 531.492 kb on + strand, within MPMX19_05046at 531.492 kb on + strand, within MPMX19_05046at 531.492 kb on + strand, within MPMX19_05046at 531.492 kb on + strand, within MPMX19_05046at 531.492 kb on - strand, within MPMX19_05046at 531.493 kb on - strand, within MPMX19_05046at 531.493 kb on - strand, within MPMX19_05046at 531.493 kb on - strand, within MPMX19_05046at 531.493 kb on - strand, within MPMX19_05046at 531.493 kb on - strand, within MPMX19_05046at 531.493 kb on - strand, within MPMX19_05046at 531.493 kb on - strand, within MPMX19_05046at 531.603 kb on + strand, within MPMX19_05046at 531.604 kb on - strand, within MPMX19_05046at 531.604 kb on - strand, within MPMX19_05046at 531.993 kb on + strand, within MPMX19_05046at 532.254 kb on + strandat 532.254 kb on + strandat 532.254 kb on + strandat 532.254 kb on + strandat 532.254 kb on + strandat 532.254 kb on + strandat 532.254 kb on + strandat 532.255 kb on - strandat 532.255 kb on - strandat 532.255 kb on - strandat 532.255 kb on - strandat 532.255 kb on - strandat 532.255 kb on - strandat 532.255 kb on - strandat 532.360 kb on - strandat 532.360 kb on - strandat 532.434 kb on + strandat 532.434 kb on + strandat 532.435 kb on - strandat 532.677 kb on + strand, within MPMX19_05047at 532.677 kb on + strand, within MPMX19_05047at 532.677 kb on + strand, within MPMX19_05047at 532.677 kb on + strand, within MPMX19_05047at 532.677 kb on + strand, within MPMX19_05047at 532.677 kb on + strand, within MPMX19_05047at 532.678 kb on - strand, within MPMX19_05047at 532.678 kb on - strand, within MPMX19_05047at 533.268 kb on + strand, within MPMX19_05047at 533.268 kb on + strand, within MPMX19_05047at 533.268 kb on + strand, within MPMX19_05047at 533.268 kb on + strand, within MPMX19_05047at 533.268 kb on + strand, within MPMX19_05047at 533.268 kb on + strand, within MPMX19_05047at 533.268 kb on + strand, within MPMX19_05047at 533.268 kb on + strand, within MPMX19_05047at 533.268 kb on + strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.271 kb on + strandat 533.271 kb on + strandat 533.271 kb on + strandat 533.271 kb on + strandat 533.271 kb on + strandat 533.271 kb on + strandat 533.272 kb on - strandat 533.272 kb on - strandat 533.272 kb on - strandat 533.272 kb on - strandat 533.272 kb on - strandat 533.272 kb on - strandat 533.272 kb on - strandat 533.412 kb on + strandat 533.412 kb on + strandat 533.412 kb on + strandat 533.413 kb on - strandat 533.413 kb on - strandat 533.413 kb on - strandat 533.413 kb on - strandat 533.413 kb on - strandat 533.413 kb on - strandat 533.538 kb on + strand, within MPMX19_05048at 533.539 kb on - strand, within MPMX19_05048at 533.550 kb on + strand, within MPMX19_05048at 533.550 kb on + strand, within MPMX19_05048at 533.550 kb on + strand, within MPMX19_05048at 533.550 kb on + strand, within MPMX19_05048at 533.550 kb on + strand, within MPMX19_05048at 533.551 kb on - strand, within MPMX19_05048at 533.551 kb on - strand, within MPMX19_05048at 533.551 kb on - strand, within MPMX19_05048at 533.551 kb on - strand, within MPMX19_05048at 533.551 kb on - strand, within MPMX19_05048at 533.551 kb on - strand, within MPMX19_05048at 533.551 kb on - strand, within MPMX19_05048at 533.552 kb on + strand, within MPMX19_05048at 533.552 kb on + strand, within MPMX19_05048at 533.552 kb on + strand, within MPMX19_05048at 533.552 kb on + strand, within MPMX19_05048at 533.552 kb on + strand, within MPMX19_05048at 533.552 kb on + strand, within MPMX19_05048at 533.553 kb on - strand, within MPMX19_05048at 533.553 kb on - strand, within MPMX19_05048at 533.553 kb on - strand, within MPMX19_05048at 533.553 kb on - strand, within MPMX19_05048at 533.553 kb on - strand, within MPMX19_05048at 533.553 kb on - strand, within MPMX19_05048at 533.617 kb on - strand, within MPMX19_05048at 533.617 kb on - strand, within MPMX19_05048at 533.637 kb on + strand, within MPMX19_05048at 533.637 kb on + strand, within MPMX19_05048at 533.638 kb on - strand, within MPMX19_05048at 533.638 kb on - strand, within MPMX19_05048at 533.639 kb on + strand, within MPMX19_05048at 533.639 kb on + strand, within MPMX19_05048at 533.639 kb on + strand, within MPMX19_05048at 533.639 kb on + strand, within MPMX19_05048at 533.639 kb on + strand, within MPMX19_05048at 533.639 kb on + strand, within MPMX19_05048at 533.640 kb on - strand, within MPMX19_05048at 533.640 kb on - strand, within MPMX19_05048at 533.872 kb on + strand, within MPMX19_05049at 534.049 kb on - strandat 534.049 kb on - strandat 534.214 kb on + strandat 534.214 kb on + strandat 534.214 kb on + strandat 534.214 kb on + strandat 534.215 kb on - strandat 534.215 kb on - strandat 534.215 kb on - strandat 534.215 kb on - strandat 534.265 kb on + strand, within MPMX19_05050at 534.265 kb on + strand, within MPMX19_05050at 534.265 kb on + strand, within MPMX19_05050at 534.265 kb on + strand, within MPMX19_05050at 534.266 kb on - strand, within MPMX19_05050at 534.281 kb on + strand, within MPMX19_05050at 534.281 kb on + strand, within MPMX19_05050at 534.281 kb on + strand, within MPMX19_05050at 534.281 kb on + strand, within MPMX19_05050at 534.281 kb on + strand, within MPMX19_05050at 534.281 kb on + strand, within MPMX19_05050at 534.281 kb on + strand, within MPMX19_05050at 534.282 kb on - strand, within MPMX19_05050at 534.282 kb on - strand, within MPMX19_05050at 534.282 kb on - strand, within MPMX19_05050at 534.282 kb on - strand, within MPMX19_05050at 534.282 kb on - strand, within MPMX19_05050at 534.282 kb on - strand, within MPMX19_05050

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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531,492 + MPMX19_05046 0.49 -0.1
531,492 + MPMX19_05046 0.49 -1.5
531,492 + MPMX19_05046 0.49 -0.7
531,492 + MPMX19_05046 0.49 -0.3
531,492 + MPMX19_05046 0.49 -0.1
531,492 - MPMX19_05046 0.49 -0.6
531,493 - MPMX19_05046 0.49 +2.2
531,493 - MPMX19_05046 0.49 +0.1
531,493 - MPMX19_05046 0.49 -0.7
531,493 - MPMX19_05046 0.49 -0.1
531,493 - MPMX19_05046 0.49 +0.9
531,493 - MPMX19_05046 0.49 -0.4
531,493 - MPMX19_05046 0.49 -0.7
531,603 + MPMX19_05046 0.56 +0.3
531,604 - MPMX19_05046 0.56 -0.7
531,604 - MPMX19_05046 0.56 -0.2
531,993 + MPMX19_05046 0.79 -1.4
532,254 + -0.8
532,254 + -0.6
532,254 + -0.6
532,254 + +0.6
532,254 + -0.7
532,254 + -1.6
532,254 + +1.6
532,255 - -1.6
532,255 - -0.3
532,255 - -0.7
532,255 - +1.0
532,255 - -0.2
532,255 - +0.9
532,255 - -0.3
532,360 - -1.2
532,360 - +1.2
532,434 + -1.1
532,434 + -0.8
532,435 - +0.0
532,677 + MPMX19_05047 0.24 +0.1
532,677 + MPMX19_05047 0.24 -1.6
532,677 + MPMX19_05047 0.24 -0.4
532,677 + MPMX19_05047 0.24 -0.6
532,677 + MPMX19_05047 0.24 -1.3
532,677 + MPMX19_05047 0.24 -1.8
532,678 - MPMX19_05047 0.24 +0.0
532,678 - MPMX19_05047 0.24 +0.0
533,268 + MPMX19_05047 0.90 -0.5
533,268 + MPMX19_05047 0.90 +0.8
533,268 + MPMX19_05047 0.90 -0.3
533,268 + MPMX19_05047 0.90 -1.3
533,268 + MPMX19_05047 0.90 +0.8
533,268 + MPMX19_05047 0.90 +0.6
533,268 + MPMX19_05047 0.90 -0.8
533,268 + MPMX19_05047 0.90 +0.0
533,268 + MPMX19_05047 0.90 -0.8
533,269 - MPMX19_05047 0.90 -0.1
533,269 - MPMX19_05047 0.90 +0.3
533,269 - MPMX19_05047 0.90 -0.3
533,269 - MPMX19_05047 0.90 -0.3
533,269 - MPMX19_05047 0.90 +0.0
533,269 - MPMX19_05047 0.90 +0.2
533,269 - MPMX19_05047 0.90 -1.2
533,269 - MPMX19_05047 0.90 +0.0
533,269 - MPMX19_05047 0.90 -0.9
533,269 - MPMX19_05047 0.90 -0.8
533,269 - MPMX19_05047 0.90 -1.7
533,271 + +0.3
533,271 + -0.7
533,271 + +2.0
533,271 + -0.2
533,271 + -0.7
533,271 + -2.3
533,272 - -1.0
533,272 - -1.0
533,272 - -1.4
533,272 - -0.9
533,272 - -0.3
533,272 - -0.8
533,272 - +0.2
533,412 + -0.3
533,412 + -1.4
533,412 + +0.6
533,413 - -0.1
533,413 - -0.2
533,413 - +2.3
533,413 - -1.2
533,413 - +0.6
533,413 - -0.2
533,538 + MPMX19_05048 0.38 -0.2
533,539 - MPMX19_05048 0.39 +0.7
533,550 + MPMX19_05048 0.42 -0.6
533,550 + MPMX19_05048 0.42 -0.7
533,550 + MPMX19_05048 0.42 -0.3
533,550 + MPMX19_05048 0.42 +0.4
533,550 + MPMX19_05048 0.42 -0.3
533,551 - MPMX19_05048 0.43 -2.0
533,551 - MPMX19_05048 0.43 +1.0
533,551 - MPMX19_05048 0.43 -0.6
533,551 - MPMX19_05048 0.43 -1.6
533,551 - MPMX19_05048 0.43 -2.1
533,551 - MPMX19_05048 0.43 -0.9
533,551 - MPMX19_05048 0.43 -0.3
533,552 + MPMX19_05048 0.43 -0.1
533,552 + MPMX19_05048 0.43 +0.2
533,552 + MPMX19_05048 0.43 -0.3
533,552 + MPMX19_05048 0.43 -0.7
533,552 + MPMX19_05048 0.43 -1.0
533,552 + MPMX19_05048 0.43 -2.4
533,553 - MPMX19_05048 0.43 -0.7
533,553 - MPMX19_05048 0.43 -1.0
533,553 - MPMX19_05048 0.43 -0.1
533,553 - MPMX19_05048 0.43 -0.8
533,553 - MPMX19_05048 0.43 -1.6
533,553 - MPMX19_05048 0.43 -0.4
533,617 - MPMX19_05048 0.65 +0.5
533,617 - MPMX19_05048 0.65 -1.1
533,637 + MPMX19_05048 0.72 -0.2
533,637 + MPMX19_05048 0.72 -0.3
533,638 - MPMX19_05048 0.72 +0.8
533,638 - MPMX19_05048 0.72 +1.0
533,639 + MPMX19_05048 0.72 -0.9
533,639 + MPMX19_05048 0.72 +1.8
533,639 + MPMX19_05048 0.72 -0.7
533,639 + MPMX19_05048 0.72 -1.1
533,639 + MPMX19_05048 0.72 -1.3
533,639 + MPMX19_05048 0.72 -2.1
533,640 - MPMX19_05048 0.73 -1.1
533,640 - MPMX19_05048 0.73 -2.0
533,872 + MPMX19_05049 0.45 +2.6
534,049 - -0.0
534,049 - -0.4
534,214 + -0.1
534,214 + +0.6
534,214 + -1.4
534,214 + -1.9
534,215 - -0.2
534,215 - +0.9
534,215 - +1.2
534,215 - -0.4
534,265 + MPMX19_05050 0.11 +0.0
534,265 + MPMX19_05050 0.11 +0.7
534,265 + MPMX19_05050 0.11 +0.2
534,265 + MPMX19_05050 0.11 -0.7
534,266 - MPMX19_05050 0.11 -0.9
534,281 + MPMX19_05050 0.11 +1.0
534,281 + MPMX19_05050 0.11 +0.2
534,281 + MPMX19_05050 0.11 -0.1
534,281 + MPMX19_05050 0.11 +0.4
534,281 + MPMX19_05050 0.11 -2.4
534,281 + MPMX19_05050 0.11 -1.0
534,281 + MPMX19_05050 0.11 -0.6
534,282 - MPMX19_05050 0.12 +0.6
534,282 - MPMX19_05050 0.12 -1.6
534,282 - MPMX19_05050 0.12 +0.6
534,282 - MPMX19_05050 0.12 +0.2
534,282 - MPMX19_05050 0.12 -1.4
534,282 - MPMX19_05050 0.12 -1.8

Or see this region's nucleotide sequence