Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05026

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05025 and MPMX19_05026 are separated by 56 nucleotidesMPMX19_05026 and MPMX19_05027 are separated by 105 nucleotides MPMX19_05025: MPMX19_05025 - Cytochrome bd-I ubiquinol oxidase subunit 2, at 510,739 to 511,758 _05025 MPMX19_05026: MPMX19_05026 - hypothetical protein, at 511,815 to 512,516 _05026 MPMX19_05027: MPMX19_05027 - hypothetical protein, at 512,622 to 513,341 _05027 Position (kb) 511 512 513Strain fitness (log2 ratio) -2 -1 0 1 2at 510.853 kb on + strand, within MPMX19_05025at 510.853 kb on + strand, within MPMX19_05025at 510.854 kb on - strand, within MPMX19_05025at 510.854 kb on - strand, within MPMX19_05025at 510.979 kb on + strand, within MPMX19_05025at 510.980 kb on - strand, within MPMX19_05025at 510.980 kb on - strand, within MPMX19_05025at 510.980 kb on - strand, within MPMX19_05025at 510.980 kb on - strand, within MPMX19_05025at 510.980 kb on - strand, within MPMX19_05025at 511.003 kb on + strand, within MPMX19_05025at 511.003 kb on + strand, within MPMX19_05025at 511.003 kb on + strand, within MPMX19_05025at 511.003 kb on + strand, within MPMX19_05025at 511.004 kb on - strand, within MPMX19_05025at 511.004 kb on - strand, within MPMX19_05025at 511.004 kb on - strand, within MPMX19_05025at 511.004 kb on - strand, within MPMX19_05025at 511.004 kb on - strand, within MPMX19_05025at 511.004 kb on - strand, within MPMX19_05025at 511.004 kb on - strand, within MPMX19_05025at 511.004 kb on - strand, within MPMX19_05025at 511.004 kb on - strand, within MPMX19_05025at 511.004 kb on - strand, within MPMX19_05025at 511.004 kb on - strand, within MPMX19_05025at 511.004 kb on - strand, within MPMX19_05025at 511.180 kb on + strand, within MPMX19_05025at 511.180 kb on + strand, within MPMX19_05025at 511.180 kb on + strand, within MPMX19_05025at 511.180 kb on + strand, within MPMX19_05025at 511.180 kb on + strand, within MPMX19_05025at 511.181 kb on - strand, within MPMX19_05025at 511.181 kb on - strand, within MPMX19_05025at 511.261 kb on + strand, within MPMX19_05025at 511.262 kb on - strand, within MPMX19_05025at 511.262 kb on - strand, within MPMX19_05025at 511.561 kb on + strand, within MPMX19_05025at 511.561 kb on + strand, within MPMX19_05025at 511.561 kb on + strand, within MPMX19_05025at 511.561 kb on + strand, within MPMX19_05025at 511.562 kb on - strand, within MPMX19_05025at 511.562 kb on - strand, within MPMX19_05025at 511.562 kb on - strand, within MPMX19_05025at 511.562 kb on - strand, within MPMX19_05025at 511.562 kb on - strand, within MPMX19_05025at 511.562 kb on - strand, within MPMX19_05025at 511.562 kb on - strand, within MPMX19_05025at 511.562 kb on - strand, within MPMX19_05025at 511.696 kb on + strandat 511.696 kb on + strandat 511.696 kb on + strandat 511.697 kb on - strandat 511.697 kb on - strandat 511.705 kb on + strandat 511.705 kb on + strandat 511.705 kb on + strandat 511.706 kb on - strandat 511.706 kb on - strandat 511.711 kb on + strandat 511.711 kb on + strandat 511.711 kb on + strandat 511.750 kb on + strandat 511.750 kb on + strandat 511.750 kb on + strandat 511.780 kb on - strandat 512.085 kb on + strand, within MPMX19_05026at 512.085 kb on + strand, within MPMX19_05026at 512.085 kb on + strand, within MPMX19_05026at 512.085 kb on + strand, within MPMX19_05026at 512.085 kb on + strand, within MPMX19_05026at 512.085 kb on + strand, within MPMX19_05026at 512.085 kb on + strand, within MPMX19_05026at 512.085 kb on + strand, within MPMX19_05026at 512.085 kb on + strand, within MPMX19_05026at 512.085 kb on + strand, within MPMX19_05026at 512.085 kb on + strand, within MPMX19_05026at 512.086 kb on - strand, within MPMX19_05026at 512.086 kb on - strand, within MPMX19_05026at 512.086 kb on - strand, within MPMX19_05026at 512.086 kb on - strand, within MPMX19_05026at 512.086 kb on - strand, within MPMX19_05026at 512.086 kb on - strand, within MPMX19_05026at 512.086 kb on - strand, within MPMX19_05026at 512.086 kb on - strand, within MPMX19_05026at 512.086 kb on - strand, within MPMX19_05026at 512.086 kb on - strand, within MPMX19_05026at 512.086 kb on - strand, within MPMX19_05026at 512.086 kb on - strand, within MPMX19_05026at 512.086 kb on - strand, within MPMX19_05026at 512.086 kb on - strand, within MPMX19_05026at 512.175 kb on + strand, within MPMX19_05026at 512.175 kb on + strand, within MPMX19_05026at 512.175 kb on + strand, within MPMX19_05026at 512.175 kb on + strand, within MPMX19_05026at 512.175 kb on + strand, within MPMX19_05026at 512.175 kb on + strand, within MPMX19_05026at 512.175 kb on + strand, within MPMX19_05026at 512.175 kb on + strand, within MPMX19_05026at 512.175 kb on + strand, within MPMX19_05026at 512.175 kb on + strand, within MPMX19_05026at 512.175 kb on + strand, within MPMX19_05026at 512.175 kb on + strand, within MPMX19_05026at 512.175 kb on + strand, within MPMX19_05026at 512.176 kb on - strand, within MPMX19_05026at 512.176 kb on - strand, within MPMX19_05026at 512.176 kb on - strand, within MPMX19_05026at 512.176 kb on - strand, within MPMX19_05026at 512.176 kb on - strand, within MPMX19_05026at 512.176 kb on - strand, within MPMX19_05026at 512.176 kb on - strand, within MPMX19_05026at 512.176 kb on - strand, within MPMX19_05026at 512.176 kb on - strand, within MPMX19_05026at 512.176 kb on - strand, within MPMX19_05026at 512.176 kb on - strand, within MPMX19_05026at 512.176 kb on - strand, within MPMX19_05026at 512.176 kb on - strand, within MPMX19_05026at 512.176 kb on - strand, within MPMX19_05026at 512.176 kb on - strand, within MPMX19_05026at 512.176 kb on - strand, within MPMX19_05026at 512.176 kb on - strand, within MPMX19_05026at 512.176 kb on - strand, within MPMX19_05026at 512.397 kb on + strand, within MPMX19_05026at 512.397 kb on + strand, within MPMX19_05026at 512.398 kb on - strand, within MPMX19_05026at 512.398 kb on - strand, within MPMX19_05026at 512.398 kb on - strand, within MPMX19_05026at 512.398 kb on - strand, within MPMX19_05026at 512.514 kb on + strandat 512.514 kb on + strandat 512.515 kb on - strandat 512.520 kb on + strandat 512.521 kb on - strandat 512.582 kb on - strandat 512.639 kb on + strandat 512.640 kb on - strandat 512.830 kb on - strand, within MPMX19_05027at 512.830 kb on - strand, within MPMX19_05027at 512.830 kb on - strand, within MPMX19_05027at 512.830 kb on - strand, within MPMX19_05027at 512.830 kb on - strand, within MPMX19_05027at 512.833 kb on - strand, within MPMX19_05027at 512.833 kb on - strand, within MPMX19_05027at 512.833 kb on - strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.097 kb on + strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.098 kb on - strand, within MPMX19_05027at 513.297 kb on + strandat 513.297 kb on + strandat 513.297 kb on + strandat 513.297 kb on + strandat 513.297 kb on + strandat 513.297 kb on + strandat 513.297 kb on + strandat 513.298 kb on - strandat 513.298 kb on - strandat 513.298 kb on - strandat 513.298 kb on - strandat 513.298 kb on - strandat 513.298 kb on - strandat 513.298 kb on - strandat 513.298 kb on - strandat 513.299 kb on + strandat 513.299 kb on + strandat 513.299 kb on + strandat 513.299 kb on + strandat 513.299 kb on + strandat 513.299 kb on + strandat 513.299 kb on + strandat 513.299 kb on + strandat 513.299 kb on + strandat 513.299 kb on + strandat 513.299 kb on + strandat 513.299 kb on + strandat 513.299 kb on + strandat 513.299 kb on + strandat 513.299 kb on + strandat 513.299 kb on + strandat 513.299 kb on + strandat 513.299 kb on + strandat 513.299 kb on + strandat 513.299 kb on + strandat 513.299 kb on + strandat 513.300 kb on - strandat 513.300 kb on - strandat 513.300 kb on - strandat 513.300 kb on - strandat 513.300 kb on - strandat 513.300 kb on - strandat 513.300 kb on - strandat 513.300 kb on - strandat 513.300 kb on - strandat 513.300 kb on - strandat 513.300 kb on - strandat 513.300 kb on - strandat 513.300 kb on - strandat 513.300 kb on - strandat 513.300 kb on - strandat 513.300 kb on - strandat 513.300 kb on - strandat 513.300 kb on - strandat 513.300 kb on - strandat 513.398 kb on - strandat 513.398 kb on - strandat 513.398 kb on - strandat 513.398 kb on - strandat 513.398 kb on - strandat 513.495 kb on + strandat 513.495 kb on + strandat 513.495 kb on + strandat 513.495 kb on + strandat 513.496 kb on - strandat 513.496 kb on - strandat 513.496 kb on - strandat 513.496 kb on - strandat 513.496 kb on - strandat 513.509 kb on + strandat 513.509 kb on + strandat 513.509 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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510,853 + MPMX19_05025 0.11 -0.5
510,853 + MPMX19_05025 0.11 -0.9
510,854 - MPMX19_05025 0.11 -1.2
510,854 - MPMX19_05025 0.11 -1.0
510,979 + MPMX19_05025 0.24 +0.3
510,980 - MPMX19_05025 0.24 -0.8
510,980 - MPMX19_05025 0.24 +1.0
510,980 - MPMX19_05025 0.24 +0.1
510,980 - MPMX19_05025 0.24 -0.1
510,980 - MPMX19_05025 0.24 +1.0
511,003 + MPMX19_05025 0.26 -0.7
511,003 + MPMX19_05025 0.26 -0.5
511,003 + MPMX19_05025 0.26 -0.7
511,003 + MPMX19_05025 0.26 -0.4
511,004 - MPMX19_05025 0.26 +0.8
511,004 - MPMX19_05025 0.26 -1.5
511,004 - MPMX19_05025 0.26 +1.0
511,004 - MPMX19_05025 0.26 +0.1
511,004 - MPMX19_05025 0.26 +0.0
511,004 - MPMX19_05025 0.26 -0.1
511,004 - MPMX19_05025 0.26 +0.3
511,004 - MPMX19_05025 0.26 +1.3
511,004 - MPMX19_05025 0.26 +0.2
511,004 - MPMX19_05025 0.26 -0.6
511,004 - MPMX19_05025 0.26 -1.2
511,004 - MPMX19_05025 0.26 +0.1
511,180 + MPMX19_05025 0.43 +0.6
511,180 + MPMX19_05025 0.43 -1.5
511,180 + MPMX19_05025 0.43 -1.2
511,180 + MPMX19_05025 0.43 -0.5
511,180 + MPMX19_05025 0.43 +0.0
511,181 - MPMX19_05025 0.43 +0.2
511,181 - MPMX19_05025 0.43 +0.2
511,261 + MPMX19_05025 0.51 +1.4
511,262 - MPMX19_05025 0.51 -1.4
511,262 - MPMX19_05025 0.51 -1.5
511,561 + MPMX19_05025 0.81 -1.2
511,561 + MPMX19_05025 0.81 -0.3
511,561 + MPMX19_05025 0.81 +0.5
511,561 + MPMX19_05025 0.81 -0.1
511,562 - MPMX19_05025 0.81 -0.5
511,562 - MPMX19_05025 0.81 +0.0
511,562 - MPMX19_05025 0.81 -2.1
511,562 - MPMX19_05025 0.81 +0.9
511,562 - MPMX19_05025 0.81 +0.4
511,562 - MPMX19_05025 0.81 -1.4
511,562 - MPMX19_05025 0.81 -0.6
511,562 - MPMX19_05025 0.81 +0.1
511,696 + -0.2
511,696 + -0.3
511,696 + +0.2
511,697 - -0.5
511,697 - +0.2
511,705 + +0.3
511,705 + -0.3
511,705 + -0.6
511,706 - +0.4
511,706 - -1.0
511,711 + +0.6
511,711 + -0.5
511,711 + +0.6
511,750 + -1.4
511,750 + +0.9
511,750 + -0.2
511,780 - +0.3
512,085 + MPMX19_05026 0.38 +0.9
512,085 + MPMX19_05026 0.38 +0.3
512,085 + MPMX19_05026 0.38 +0.3
512,085 + MPMX19_05026 0.38 +0.0
512,085 + MPMX19_05026 0.38 -0.3
512,085 + MPMX19_05026 0.38 +1.1
512,085 + MPMX19_05026 0.38 -0.3
512,085 + MPMX19_05026 0.38 +2.6
512,085 + MPMX19_05026 0.38 -0.2
512,085 + MPMX19_05026 0.38 +2.2
512,085 + MPMX19_05026 0.38 +0.1
512,086 - MPMX19_05026 0.39 +0.6
512,086 - MPMX19_05026 0.39 +0.2
512,086 - MPMX19_05026 0.39 +1.5
512,086 - MPMX19_05026 0.39 -1.7
512,086 - MPMX19_05026 0.39 -0.7
512,086 - MPMX19_05026 0.39 -0.7
512,086 - MPMX19_05026 0.39 -0.1
512,086 - MPMX19_05026 0.39 +0.7
512,086 - MPMX19_05026 0.39 -0.2
512,086 - MPMX19_05026 0.39 +2.2
512,086 - MPMX19_05026 0.39 +0.1
512,086 - MPMX19_05026 0.39 -1.0
512,086 - MPMX19_05026 0.39 -0.4
512,086 - MPMX19_05026 0.39 -0.1
512,175 + MPMX19_05026 0.51 -0.5
512,175 + MPMX19_05026 0.51 -0.1
512,175 + MPMX19_05026 0.51 -0.7
512,175 + MPMX19_05026 0.51 -1.6
512,175 + MPMX19_05026 0.51 +0.2
512,175 + MPMX19_05026 0.51 -0.8
512,175 + MPMX19_05026 0.51 -0.7
512,175 + MPMX19_05026 0.51 +1.0
512,175 + MPMX19_05026 0.51 -0.9
512,175 + MPMX19_05026 0.51 -0.4
512,175 + MPMX19_05026 0.51 -0.2
512,175 + MPMX19_05026 0.51 -0.4
512,175 + MPMX19_05026 0.51 -0.3
512,176 - MPMX19_05026 0.51 +1.3
512,176 - MPMX19_05026 0.51 -0.0
512,176 - MPMX19_05026 0.51 -0.7
512,176 - MPMX19_05026 0.51 -0.8
512,176 - MPMX19_05026 0.51 +0.9
512,176 - MPMX19_05026 0.51 -1.2
512,176 - MPMX19_05026 0.51 +0.0
512,176 - MPMX19_05026 0.51 +0.4
512,176 - MPMX19_05026 0.51 -0.4
512,176 - MPMX19_05026 0.51 +0.6
512,176 - MPMX19_05026 0.51 +0.5
512,176 - MPMX19_05026 0.51 +0.7
512,176 - MPMX19_05026 0.51 +0.1
512,176 - MPMX19_05026 0.51 -0.6
512,176 - MPMX19_05026 0.51 -0.4
512,176 - MPMX19_05026 0.51 -1.7
512,176 - MPMX19_05026 0.51 +0.5
512,176 - MPMX19_05026 0.51 -1.5
512,397 + MPMX19_05026 0.83 -2.1
512,397 + MPMX19_05026 0.83 +0.8
512,398 - MPMX19_05026 0.83 +0.2
512,398 - MPMX19_05026 0.83 -1.8
512,398 - MPMX19_05026 0.83 -2.6
512,398 - MPMX19_05026 0.83 -0.7
512,514 + +0.6
512,514 + -1.4
512,515 - -1.0
512,520 + -0.5
512,521 - -0.5
512,582 - -1.4
512,639 + -0.5
512,640 - -1.2
512,830 - MPMX19_05027 0.29 -1.2
512,830 - MPMX19_05027 0.29 +0.3
512,830 - MPMX19_05027 0.29 -0.7
512,830 - MPMX19_05027 0.29 -0.1
512,830 - MPMX19_05027 0.29 -1.0
512,833 - MPMX19_05027 0.29 -0.1
512,833 - MPMX19_05027 0.29 -1.5
512,833 - MPMX19_05027 0.29 -0.1
513,097 + MPMX19_05027 0.66 +1.0
513,097 + MPMX19_05027 0.66 +1.3
513,097 + MPMX19_05027 0.66 -0.7
513,097 + MPMX19_05027 0.66 -0.5
513,097 + MPMX19_05027 0.66 +0.2
513,097 + MPMX19_05027 0.66 -0.4
513,097 + MPMX19_05027 0.66 +0.3
513,097 + MPMX19_05027 0.66 +0.4
513,097 + MPMX19_05027 0.66 -0.2
513,097 + MPMX19_05027 0.66 -0.2
513,097 + MPMX19_05027 0.66 +1.2
513,097 + MPMX19_05027 0.66 -1.7
513,097 + MPMX19_05027 0.66 -2.0
513,097 + MPMX19_05027 0.66 +0.8
513,097 + MPMX19_05027 0.66 -0.8
513,097 + MPMX19_05027 0.66 -0.1
513,097 + MPMX19_05027 0.66 -1.8
513,097 + MPMX19_05027 0.66 -0.2
513,097 + MPMX19_05027 0.66 -1.1
513,097 + MPMX19_05027 0.66 -0.9
513,097 + MPMX19_05027 0.66 -0.8
513,097 + MPMX19_05027 0.66 +0.9
513,098 - MPMX19_05027 0.66 -0.5
513,098 - MPMX19_05027 0.66 -1.4
513,098 - MPMX19_05027 0.66 +0.3
513,098 - MPMX19_05027 0.66 +0.0
513,098 - MPMX19_05027 0.66 -0.0
513,098 - MPMX19_05027 0.66 -1.8
513,098 - MPMX19_05027 0.66 -1.5
513,098 - MPMX19_05027 0.66 -0.5
513,098 - MPMX19_05027 0.66 -0.1
513,098 - MPMX19_05027 0.66 +0.0
513,098 - MPMX19_05027 0.66 +0.4
513,098 - MPMX19_05027 0.66 -0.0
513,098 - MPMX19_05027 0.66 +0.1
513,098 - MPMX19_05027 0.66 -0.8
513,098 - MPMX19_05027 0.66 -0.7
513,098 - MPMX19_05027 0.66 -1.0
513,098 - MPMX19_05027 0.66 +0.5
513,098 - MPMX19_05027 0.66 -0.8
513,098 - MPMX19_05027 0.66 +0.1
513,098 - MPMX19_05027 0.66 -0.4
513,098 - MPMX19_05027 0.66 +0.6
513,098 - MPMX19_05027 0.66 -0.5
513,098 - MPMX19_05027 0.66 -2.1
513,098 - MPMX19_05027 0.66 -0.9
513,098 - MPMX19_05027 0.66 -0.4
513,297 + +1.1
513,297 + -1.0
513,297 + -0.5
513,297 + -1.5
513,297 + -1.0
513,297 + -0.3
513,297 + -1.9
513,298 - -1.4
513,298 - -1.0
513,298 - -0.2
513,298 - -0.3
513,298 - -0.1
513,298 - +0.6
513,298 - -0.2
513,298 - -0.3
513,299 + -0.7
513,299 + -0.4
513,299 + +0.5
513,299 + -1.5
513,299 + +0.8
513,299 + -1.0
513,299 + -1.7
513,299 + -2.5
513,299 + -1.2
513,299 + +1.4
513,299 + -1.8
513,299 + +0.5
513,299 + +2.6
513,299 + -0.2
513,299 + +2.0
513,299 + +0.3
513,299 + -0.2
513,299 + -0.2
513,299 + -0.2
513,299 + +0.2
513,299 + -1.8
513,300 - -1.2
513,300 - +1.2
513,300 - +0.7
513,300 - -0.7
513,300 - +0.6
513,300 - -1.4
513,300 - -0.4
513,300 - -0.0
513,300 - -1.9
513,300 - -1.0
513,300 - +0.2
513,300 - +0.9
513,300 - -1.0
513,300 - +0.8
513,300 - -0.1
513,300 - -0.2
513,300 - +0.4
513,300 - -1.0
513,300 - -0.1
513,398 - +0.0
513,398 - +0.3
513,398 - +0.0
513,398 - -0.9
513,398 - +0.4
513,495 + +1.6
513,495 + +0.1
513,495 + -1.3
513,495 + -0.2
513,496 - -1.7
513,496 - +0.5
513,496 - -0.7
513,496 - +0.0
513,496 - -0.6
513,509 + -1.2
513,509 + -0.6
513,509 + -0.3

Or see this region's nucleotide sequence