Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04999 and MPMX19_05000 are separated by 24 nucleotides MPMX19_05000 and MPMX19_05001 are separated by 148 nucleotides MPMX19_05001 and MPMX19_05002 are separated by 33 nucleotides
MPMX19_04999: MPMX19_04999 - hypothetical protein, at 479,935 to 483,279
_04999
MPMX19_05000: MPMX19_05000 - hypothetical protein, at 483,304 to 484,149
_05000
MPMX19_05001: MPMX19_05001 - hypothetical protein, at 484,298 to 484,690
_05001
MPMX19_05002: MPMX19_05002 - HTH-type transcriptional regulator DmlR, at 484,724 to 485,689
_05002
Position (kb) 483
484
485 Strain fitness (log2 ratio) -2
-1
0
1
2 at 482.395 kb on + strand, within MPMX19_04999 at 482.395 kb on + strand, within MPMX19_04999 at 482.395 kb on + strand, within MPMX19_04999 at 482.395 kb on + strand, within MPMX19_04999 at 482.395 kb on + strand, within MPMX19_04999 at 482.395 kb on + strand, within MPMX19_04999 at 482.395 kb on + strand, within MPMX19_04999 at 482.395 kb on + strand, within MPMX19_04999 at 482.395 kb on + strand, within MPMX19_04999 at 482.395 kb on + strand, within MPMX19_04999 at 482.396 kb on - strand, within MPMX19_04999 at 482.396 kb on - strand, within MPMX19_04999 at 482.396 kb on - strand, within MPMX19_04999 at 482.416 kb on + strand, within MPMX19_04999 at 482.416 kb on + strand, within MPMX19_04999 at 482.416 kb on + strand, within MPMX19_04999 at 482.416 kb on + strand, within MPMX19_04999 at 482.416 kb on + strand, within MPMX19_04999 at 482.416 kb on + strand, within MPMX19_04999 at 482.416 kb on + strand, within MPMX19_04999 at 482.416 kb on + strand, within MPMX19_04999 at 482.416 kb on + strand, within MPMX19_04999 at 482.416 kb on + strand, within MPMX19_04999 at 482.416 kb on + strand, within MPMX19_04999 at 482.416 kb on + strand, within MPMX19_04999 at 482.417 kb on - strand, within MPMX19_04999 at 482.417 kb on - strand, within MPMX19_04999 at 482.417 kb on - strand, within MPMX19_04999 at 482.417 kb on - strand, within MPMX19_04999 at 482.417 kb on - strand, within MPMX19_04999 at 482.417 kb on - strand, within MPMX19_04999 at 482.539 kb on + strand, within MPMX19_04999 at 482.539 kb on + strand, within MPMX19_04999 at 482.540 kb on - strand, within MPMX19_04999 at 482.540 kb on - strand, within MPMX19_04999 at 482.540 kb on - strand, within MPMX19_04999 at 482.626 kb on + strand, within MPMX19_04999 at 482.626 kb on + strand, within MPMX19_04999 at 482.626 kb on + strand, within MPMX19_04999 at 482.626 kb on + strand, within MPMX19_04999 at 482.626 kb on + strand, within MPMX19_04999 at 482.626 kb on + strand, within MPMX19_04999 at 482.626 kb on + strand, within MPMX19_04999 at 482.626 kb on + strand, within MPMX19_04999 at 482.626 kb on + strand, within MPMX19_04999 at 482.626 kb on + strand, within MPMX19_04999 at 482.626 kb on + strand, within MPMX19_04999 at 482.627 kb on - strand, within MPMX19_04999 at 482.627 kb on - strand, within MPMX19_04999 at 482.627 kb on - strand, within MPMX19_04999 at 482.665 kb on + strand, within MPMX19_04999 at 482.665 kb on + strand, within MPMX19_04999 at 482.665 kb on + strand, within MPMX19_04999 at 482.665 kb on + strand, within MPMX19_04999 at 482.665 kb on + strand, within MPMX19_04999 at 482.666 kb on - strand, within MPMX19_04999 at 482.666 kb on - strand, within MPMX19_04999 at 482.666 kb on - strand, within MPMX19_04999 at 482.666 kb on - strand, within MPMX19_04999 at 482.752 kb on + strand, within MPMX19_04999 at 482.752 kb on + strand, within MPMX19_04999 at 482.752 kb on + strand, within MPMX19_04999 at 482.752 kb on + strand, within MPMX19_04999 at 482.752 kb on + strand, within MPMX19_04999 at 482.752 kb on + strand, within MPMX19_04999 at 482.752 kb on + strand, within MPMX19_04999 at 482.752 kb on + strand, within MPMX19_04999 at 482.752 kb on + strand, within MPMX19_04999 at 482.753 kb on - strand, within MPMX19_04999 at 482.753 kb on - strand, within MPMX19_04999 at 482.753 kb on - strand, within MPMX19_04999 at 482.753 kb on - strand, within MPMX19_04999 at 482.753 kb on - strand, within MPMX19_04999 at 482.809 kb on + strand, within MPMX19_04999 at 482.809 kb on + strand, within MPMX19_04999 at 482.809 kb on + strand, within MPMX19_04999 at 482.983 kb on + strand at 482.983 kb on + strand at 482.983 kb on + strand at 482.983 kb on + strand at 482.983 kb on + strand at 482.984 kb on - strand at 482.984 kb on - strand at 482.984 kb on - strand at 482.984 kb on - strand at 482.984 kb on - strand at 482.984 kb on - strand at 482.984 kb on - strand at 483.004 kb on + strand at 483.004 kb on + strand at 483.004 kb on + strand at 483.004 kb on + strand at 483.005 kb on - strand at 483.005 kb on - strand at 483.049 kb on + strand at 483.049 kb on + strand at 483.049 kb on + strand at 483.049 kb on + strand at 483.049 kb on + strand at 483.050 kb on - strand at 483.050 kb on - strand at 483.050 kb on - strand at 483.050 kb on - strand at 483.050 kb on - strand at 483.050 kb on - strand at 483.050 kb on - strand at 483.050 kb on - strand at 483.133 kb on + strand at 483.134 kb on - strand at 483.154 kb on + strand at 483.154 kb on + strand at 483.155 kb on - strand at 483.155 kb on - strand at 483.155 kb on - strand at 483.550 kb on + strand, within MPMX19_05000 at 483.550 kb on + strand, within MPMX19_05000 at 483.550 kb on + strand, within MPMX19_05000 at 483.550 kb on + strand, within MPMX19_05000 at 483.551 kb on - strand, within MPMX19_05000 at 483.551 kb on - strand, within MPMX19_05000 at 483.760 kb on + strand, within MPMX19_05000 at 483.761 kb on - strand, within MPMX19_05000 at 483.826 kb on + strand, within MPMX19_05000 at 483.826 kb on + strand, within MPMX19_05000 at 483.826 kb on + strand, within MPMX19_05000 at 483.827 kb on - strand, within MPMX19_05000 at 483.827 kb on - strand, within MPMX19_05000 at 483.827 kb on - strand, within MPMX19_05000 at 483.827 kb on - strand, within MPMX19_05000 at 483.827 kb on - strand, within MPMX19_05000 at 483.946 kb on + strand, within MPMX19_05000 at 483.946 kb on + strand, within MPMX19_05000 at 483.946 kb on + strand, within MPMX19_05000 at 483.946 kb on + strand, within MPMX19_05000 at 483.946 kb on + strand, within MPMX19_05000 at 483.946 kb on + strand, within MPMX19_05000 at 483.946 kb on + strand, within MPMX19_05000 at 483.946 kb on + strand, within MPMX19_05000 at 483.946 kb on + strand, within MPMX19_05000 at 483.947 kb on - strand, within MPMX19_05000 at 483.947 kb on - strand, within MPMX19_05000 at 483.947 kb on - strand, within MPMX19_05000 at 483.947 kb on - strand, within MPMX19_05000 at 483.947 kb on - strand, within MPMX19_05000 at 483.947 kb on - strand, within MPMX19_05000 at 483.947 kb on - strand, within MPMX19_05000 at 483.947 kb on - strand, within MPMX19_05000 at 483.947 kb on - strand, within MPMX19_05000 at 483.947 kb on - strand, within MPMX19_05000 at 483.947 kb on - strand, within MPMX19_05000 at 483.947 kb on - strand, within MPMX19_05000 at 483.947 kb on - strand, within MPMX19_05000 at 483.947 kb on - strand, within MPMX19_05000 at 483.947 kb on - strand, within MPMX19_05000 at 484.048 kb on + strand, within MPMX19_05000 at 484.049 kb on - strand, within MPMX19_05000 at 484.167 kb on + strand at 484.225 kb on - strand at 484.225 kb on - strand at 484.225 kb on - strand at 484.225 kb on - strand at 484.238 kb on + strand at 484.238 kb on + strand at 484.239 kb on - strand at 484.725 kb on + strand at 484.801 kb on - strand at 484.878 kb on + strand, within MPMX19_05002 at 484.878 kb on + strand, within MPMX19_05002 at 484.878 kb on + strand, within MPMX19_05002 at 484.879 kb on - strand, within MPMX19_05002 at 485.115 kb on + strand, within MPMX19_05002 at 485.115 kb on + strand, within MPMX19_05002 at 485.115 kb on + strand, within MPMX19_05002 at 485.115 kb on + strand, within MPMX19_05002 at 485.115 kb on + strand, within MPMX19_05002 at 485.115 kb on + strand, within MPMX19_05002 at 485.115 kb on + strand, within MPMX19_05002 at 485.115 kb on + strand, within MPMX19_05002 at 485.115 kb on + strand, within MPMX19_05002 at 485.115 kb on + strand, within MPMX19_05002 at 485.116 kb on - strand, within MPMX19_05002 at 485.116 kb on - strand, within MPMX19_05002 at 485.116 kb on - strand, within MPMX19_05002 at 485.116 kb on - strand, within MPMX19_05002 at 485.116 kb on - strand, within MPMX19_05002 at 485.116 kb on - strand, within MPMX19_05002 at 485.116 kb on - strand, within MPMX19_05002 at 485.116 kb on - strand, within MPMX19_05002 at 485.116 kb on - strand, within MPMX19_05002
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 482,395 + MPMX19_04999 0.74 -0.0 482,395 + MPMX19_04999 0.74 -1.2 482,395 + MPMX19_04999 0.74 -1.4 482,395 + MPMX19_04999 0.74 -0.2 482,395 + MPMX19_04999 0.74 -0.9 482,395 + MPMX19_04999 0.74 -0.2 482,395 + MPMX19_04999 0.74 -0.7 482,395 + MPMX19_04999 0.74 +1.1 482,395 + MPMX19_04999 0.74 -0.2 482,395 + MPMX19_04999 0.74 +0.4 482,396 - MPMX19_04999 0.74 +1.0 482,396 - MPMX19_04999 0.74 -0.2 482,396 - MPMX19_04999 0.74 -1.5 482,416 + MPMX19_04999 0.74 -1.8 482,416 + MPMX19_04999 0.74 -2.4 482,416 + MPMX19_04999 0.74 +0.2 482,416 + MPMX19_04999 0.74 -0.1 482,416 + MPMX19_04999 0.74 -0.1 482,416 + MPMX19_04999 0.74 -0.7 482,416 + MPMX19_04999 0.74 -0.3 482,416 + MPMX19_04999 0.74 -0.6 482,416 + MPMX19_04999 0.74 -0.3 482,416 + MPMX19_04999 0.74 +0.2 482,416 + MPMX19_04999 0.74 -2.2 482,416 + MPMX19_04999 0.74 +0.2 482,417 - MPMX19_04999 0.74 +1.6 482,417 - MPMX19_04999 0.74 +0.5 482,417 - MPMX19_04999 0.74 -1.2 482,417 - MPMX19_04999 0.74 -0.8 482,417 - MPMX19_04999 0.74 -1.4 482,417 - MPMX19_04999 0.74 -0.9 482,539 + MPMX19_04999 0.78 -1.4 482,539 + MPMX19_04999 0.78 +0.6 482,540 - MPMX19_04999 0.78 +0.1 482,540 - MPMX19_04999 0.78 +0.1 482,540 - MPMX19_04999 0.78 -0.4 482,626 + MPMX19_04999 0.80 -1.1 482,626 + MPMX19_04999 0.80 +0.6 482,626 + MPMX19_04999 0.80 -0.5 482,626 + MPMX19_04999 0.80 -0.1 482,626 + MPMX19_04999 0.80 -0.2 482,626 + MPMX19_04999 0.80 +0.8 482,626 + MPMX19_04999 0.80 +1.0 482,626 + MPMX19_04999 0.80 -0.4 482,626 + MPMX19_04999 0.80 -1.1 482,626 + MPMX19_04999 0.80 +1.2 482,626 + MPMX19_04999 0.80 -0.0 482,627 - MPMX19_04999 0.80 +0.6 482,627 - MPMX19_04999 0.80 +0.3 482,627 - MPMX19_04999 0.80 -1.0 482,665 + MPMX19_04999 0.82 -1.8 482,665 + MPMX19_04999 0.82 -0.6 482,665 + MPMX19_04999 0.82 +0.2 482,665 + MPMX19_04999 0.82 -0.9 482,665 + MPMX19_04999 0.82 -0.9 482,666 - MPMX19_04999 0.82 -0.6 482,666 - MPMX19_04999 0.82 +0.6 482,666 - MPMX19_04999 0.82 +0.3 482,666 - MPMX19_04999 0.82 -1.1 482,752 + MPMX19_04999 0.84 +0.1 482,752 + MPMX19_04999 0.84 -0.8 482,752 + MPMX19_04999 0.84 +1.4 482,752 + MPMX19_04999 0.84 +0.4 482,752 + MPMX19_04999 0.84 +0.2 482,752 + MPMX19_04999 0.84 -0.8 482,752 + MPMX19_04999 0.84 -1.6 482,752 + MPMX19_04999 0.84 -0.4 482,752 + MPMX19_04999 0.84 +0.3 482,753 - MPMX19_04999 0.84 -1.7 482,753 - MPMX19_04999 0.84 -0.1 482,753 - MPMX19_04999 0.84 -0.8 482,753 - MPMX19_04999 0.84 -1.6 482,753 - MPMX19_04999 0.84 -0.0 482,809 + MPMX19_04999 0.86 +1.6 482,809 + MPMX19_04999 0.86 -0.2 482,809 + MPMX19_04999 0.86 -2.1 482,983 + +0.4 482,983 + -0.1 482,983 + -1.2 482,983 + -0.7 482,983 + -1.2 482,984 - +0.2 482,984 - -0.4 482,984 - +0.4 482,984 - -0.9 482,984 - +1.1 482,984 - +1.6 482,984 - +0.4 483,004 + +0.1 483,004 + -1.1 483,004 + -0.4 483,004 + -0.8 483,005 - -0.4 483,005 - -0.5 483,049 + -0.2 483,049 + -0.7 483,049 + -0.3 483,049 + -1.7 483,049 + -0.2 483,050 - -0.2 483,050 - -1.2 483,050 - -1.2 483,050 - -0.3 483,050 - -0.1 483,050 - -1.2 483,050 - -0.4 483,050 - -1.2 483,133 + -0.5 483,134 - -0.8 483,154 + -1.2 483,154 + +0.4 483,155 - +0.3 483,155 - -1.1 483,155 - +1.0 483,550 + MPMX19_05000 0.29 -0.5 483,550 + MPMX19_05000 0.29 -1.9 483,550 + MPMX19_05000 0.29 +0.2 483,550 + MPMX19_05000 0.29 +0.2 483,551 - MPMX19_05000 0.29 -0.5 483,551 - MPMX19_05000 0.29 +0.1 483,760 + MPMX19_05000 0.54 +0.3 483,761 - MPMX19_05000 0.54 -0.8 483,826 + MPMX19_05000 0.62 -2.3 483,826 + MPMX19_05000 0.62 -1.3 483,826 + MPMX19_05000 0.62 -1.1 483,827 - MPMX19_05000 0.62 -1.7 483,827 - MPMX19_05000 0.62 -0.8 483,827 - MPMX19_05000 0.62 +0.4 483,827 - MPMX19_05000 0.62 -0.1 483,827 - MPMX19_05000 0.62 -1.4 483,946 + MPMX19_05000 0.76 -1.6 483,946 + MPMX19_05000 0.76 -1.4 483,946 + MPMX19_05000 0.76 +0.2 483,946 + MPMX19_05000 0.76 -0.7 483,946 + MPMX19_05000 0.76 -0.4 483,946 + MPMX19_05000 0.76 +0.2 483,946 + MPMX19_05000 0.76 -0.1 483,946 + MPMX19_05000 0.76 -0.7 483,946 + MPMX19_05000 0.76 -1.3 483,947 - MPMX19_05000 0.76 -0.8 483,947 - MPMX19_05000 0.76 -0.9 483,947 - MPMX19_05000 0.76 -1.4 483,947 - MPMX19_05000 0.76 -0.6 483,947 - MPMX19_05000 0.76 -0.7 483,947 - MPMX19_05000 0.76 -0.7 483,947 - MPMX19_05000 0.76 +0.6 483,947 - MPMX19_05000 0.76 -0.8 483,947 - MPMX19_05000 0.76 -1.4 483,947 - MPMX19_05000 0.76 -0.7 483,947 - MPMX19_05000 0.76 -0.3 483,947 - MPMX19_05000 0.76 -0.2 483,947 - MPMX19_05000 0.76 -1.4 483,947 - MPMX19_05000 0.76 +0.3 483,947 - MPMX19_05000 0.76 -0.5 484,048 + MPMX19_05000 0.88 +0.2 484,049 - MPMX19_05000 0.88 -0.1 484,167 + +0.1 484,225 - -1.2 484,225 - -0.4 484,225 - -1.2 484,225 - -0.7 484,238 + -1.4 484,238 + -0.4 484,239 - -2.2 484,725 + -0.1 484,801 - +0.4 484,878 + MPMX19_05002 0.16 -1.4 484,878 + MPMX19_05002 0.16 +0.3 484,878 + MPMX19_05002 0.16 -1.7 484,879 - MPMX19_05002 0.16 +0.1 485,115 + MPMX19_05002 0.40 -0.7 485,115 + MPMX19_05002 0.40 -0.1 485,115 + MPMX19_05002 0.40 +0.4 485,115 + MPMX19_05002 0.40 -1.2 485,115 + MPMX19_05002 0.40 +0.1 485,115 + MPMX19_05002 0.40 +1.8 485,115 + MPMX19_05002 0.40 -0.9 485,115 + MPMX19_05002 0.40 +0.6 485,115 + MPMX19_05002 0.40 -0.7 485,115 + MPMX19_05002 0.40 -0.7 485,116 - MPMX19_05002 0.41 -0.5 485,116 - MPMX19_05002 0.41 +0.6 485,116 - MPMX19_05002 0.41 -0.2 485,116 - MPMX19_05002 0.41 -0.1 485,116 - MPMX19_05002 0.41 -0.7 485,116 - MPMX19_05002 0.41 +0.1 485,116 - MPMX19_05002 0.41 -1.7 485,116 - MPMX19_05002 0.41 -1.8 485,116 - MPMX19_05002 0.41 -0.1
Or see this region's nucleotide sequence