Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04958 and MPMX19_04959 are separated by 42 nucleotides MPMX19_04959 and MPMX19_04960 are separated by 172 nucleotides MPMX19_04960 and MPMX19_04961 are separated by 566 nucleotides
MPMX19_04958: MPMX19_04958 - Methyl-accepting chemotaxis protein, at 420,845 to 422,419
_04958
MPMX19_04959: MPMX19_04959 - 5-oxoprolinase subunit A, at 422,462 to 423,223
_04959
MPMX19_04960: MPMX19_04960 - hypothetical protein, at 423,396 to 424,202
_04960
MPMX19_04961: MPMX19_04961 - hypothetical protein, at 424,769 to 425,533
_04961
Position (kb) 423
424
425 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 422.606 kb on - strand, within MPMX19_04959 at 422.790 kb on + strand, within MPMX19_04959 at 422.790 kb on + strand, within MPMX19_04959 at 422.790 kb on + strand, within MPMX19_04959 at 422.790 kb on + strand, within MPMX19_04959 at 422.790 kb on + strand, within MPMX19_04959 at 422.790 kb on + strand, within MPMX19_04959 at 422.790 kb on + strand, within MPMX19_04959 at 422.790 kb on + strand, within MPMX19_04959 at 422.791 kb on - strand, within MPMX19_04959 at 422.791 kb on - strand, within MPMX19_04959 at 422.791 kb on - strand, within MPMX19_04959 at 422.791 kb on - strand, within MPMX19_04959 at 422.791 kb on - strand, within MPMX19_04959 at 422.791 kb on - strand, within MPMX19_04959 at 422.791 kb on - strand, within MPMX19_04959 at 422.791 kb on - strand, within MPMX19_04959 at 422.791 kb on - strand, within MPMX19_04959 at 422.791 kb on - strand, within MPMX19_04959 at 422.791 kb on - strand, within MPMX19_04959 at 422.810 kb on + strand, within MPMX19_04959 at 422.810 kb on + strand, within MPMX19_04959 at 422.810 kb on + strand, within MPMX19_04959 at 422.811 kb on - strand, within MPMX19_04959 at 422.811 kb on - strand, within MPMX19_04959 at 422.811 kb on - strand, within MPMX19_04959 at 422.811 kb on - strand, within MPMX19_04959 at 422.811 kb on - strand, within MPMX19_04959 at 422.811 kb on - strand, within MPMX19_04959 at 422.975 kb on + strand, within MPMX19_04959 at 422.975 kb on + strand, within MPMX19_04959 at 422.975 kb on + strand, within MPMX19_04959 at 422.975 kb on + strand, within MPMX19_04959 at 422.975 kb on + strand, within MPMX19_04959 at 422.975 kb on + strand, within MPMX19_04959 at 422.975 kb on + strand, within MPMX19_04959 at 422.976 kb on - strand, within MPMX19_04959 at 422.976 kb on - strand, within MPMX19_04959 at 422.976 kb on - strand, within MPMX19_04959 at 422.976 kb on - strand, within MPMX19_04959 at 422.976 kb on - strand, within MPMX19_04959 at 422.976 kb on - strand, within MPMX19_04959 at 422.976 kb on - strand, within MPMX19_04959 at 422.976 kb on - strand, within MPMX19_04959 at 423.057 kb on + strand, within MPMX19_04959 at 423.058 kb on - strand, within MPMX19_04959 at 423.058 kb on - strand, within MPMX19_04959 at 423.221 kb on + strand at 423.221 kb on + strand at 423.221 kb on + strand at 423.221 kb on + strand at 423.221 kb on + strand at 423.222 kb on - strand at 423.250 kb on + strand at 423.250 kb on + strand at 423.250 kb on + strand at 423.250 kb on + strand at 423.250 kb on + strand at 423.250 kb on + strand at 423.250 kb on + strand at 423.251 kb on - strand at 423.251 kb on - strand at 423.251 kb on - strand at 423.251 kb on - strand at 423.251 kb on - strand at 423.251 kb on - strand at 423.372 kb on - strand at 423.372 kb on - strand at 423.487 kb on + strand, within MPMX19_04960 at 423.487 kb on + strand, within MPMX19_04960 at 423.487 kb on + strand, within MPMX19_04960 at 423.488 kb on - strand, within MPMX19_04960 at 423.488 kb on - strand, within MPMX19_04960 at 423.488 kb on - strand, within MPMX19_04960 at 423.488 kb on - strand, within MPMX19_04960 at 423.488 kb on - strand, within MPMX19_04960 at 423.488 kb on - strand, within MPMX19_04960 at 423.488 kb on - strand, within MPMX19_04960 at 423.619 kb on + strand, within MPMX19_04960 at 423.794 kb on + strand, within MPMX19_04960 at 423.844 kb on + strand, within MPMX19_04960 at 423.845 kb on - strand, within MPMX19_04960 at 423.845 kb on - strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.943 kb on + strand, within MPMX19_04960 at 423.943 kb on + strand, within MPMX19_04960 at 423.943 kb on + strand, within MPMX19_04960 at 423.943 kb on + strand, within MPMX19_04960 at 423.944 kb on - strand, within MPMX19_04960 at 424.194 kb on + strand at 424.194 kb on + strand at 424.194 kb on + strand at 424.195 kb on - strand at 424.195 kb on - strand at 424.268 kb on + strand at 424.277 kb on + strand at 424.278 kb on - strand at 424.285 kb on - strand at 424.497 kb on + strand at 424.498 kb on - strand at 424.608 kb on + strand at 424.608 kb on + strand at 424.706 kb on - strand at 424.706 kb on - strand at 424.792 kb on + strand at 424.792 kb on + strand at 424.792 kb on + strand at 424.792 kb on + strand at 424.792 kb on + strand at 424.792 kb on + strand at 424.792 kb on + strand at 424.793 kb on - strand at 424.815 kb on + strand at 424.845 kb on + strand at 424.845 kb on + strand at 424.846 kb on - strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.051 kb on + strand, within MPMX19_04961 at 425.051 kb on + strand, within MPMX19_04961 at 425.051 kb on + strand, within MPMX19_04961 at 425.051 kb on + strand, within MPMX19_04961 at 425.051 kb on + strand, within MPMX19_04961 at 425.051 kb on + strand, within MPMX19_04961 at 425.051 kb on + strand, within MPMX19_04961 at 425.052 kb on - strand, within MPMX19_04961 at 425.052 kb on - strand, within MPMX19_04961 at 425.052 kb on - strand, within MPMX19_04961 at 425.052 kb on - strand, within MPMX19_04961 at 425.052 kb on - strand, within MPMX19_04961
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 422,606 - MPMX19_04959 0.19 -2.4 422,790 + MPMX19_04959 0.43 +0.3 422,790 + MPMX19_04959 0.43 -2.9 422,790 + MPMX19_04959 0.43 -1.5 422,790 + MPMX19_04959 0.43 -0.3 422,790 + MPMX19_04959 0.43 +0.2 422,790 + MPMX19_04959 0.43 -1.5 422,790 + MPMX19_04959 0.43 -1.6 422,790 + MPMX19_04959 0.43 -0.4 422,791 - MPMX19_04959 0.43 +0.7 422,791 - MPMX19_04959 0.43 -0.8 422,791 - MPMX19_04959 0.43 -1.9 422,791 - MPMX19_04959 0.43 -1.0 422,791 - MPMX19_04959 0.43 -0.3 422,791 - MPMX19_04959 0.43 -1.2 422,791 - MPMX19_04959 0.43 -1.3 422,791 - MPMX19_04959 0.43 +0.5 422,791 - MPMX19_04959 0.43 -0.3 422,791 - MPMX19_04959 0.43 -1.2 422,791 - MPMX19_04959 0.43 -1.0 422,810 + MPMX19_04959 0.46 -0.1 422,810 + MPMX19_04959 0.46 +0.5 422,810 + MPMX19_04959 0.46 -1.5 422,811 - MPMX19_04959 0.46 -1.7 422,811 - MPMX19_04959 0.46 -0.0 422,811 - MPMX19_04959 0.46 +0.1 422,811 - MPMX19_04959 0.46 +0.5 422,811 - MPMX19_04959 0.46 +1.7 422,811 - MPMX19_04959 0.46 -0.4 422,975 + MPMX19_04959 0.67 -2.2 422,975 + MPMX19_04959 0.67 -1.9 422,975 + MPMX19_04959 0.67 +0.7 422,975 + MPMX19_04959 0.67 -0.5 422,975 + MPMX19_04959 0.67 -0.3 422,975 + MPMX19_04959 0.67 -1.1 422,975 + MPMX19_04959 0.67 +0.1 422,976 - MPMX19_04959 0.67 -0.9 422,976 - MPMX19_04959 0.67 -0.1 422,976 - MPMX19_04959 0.67 -0.2 422,976 - MPMX19_04959 0.67 -1.9 422,976 - MPMX19_04959 0.67 -0.7 422,976 - MPMX19_04959 0.67 -0.1 422,976 - MPMX19_04959 0.67 +0.2 422,976 - MPMX19_04959 0.67 +0.1 423,057 + MPMX19_04959 0.78 -1.1 423,058 - MPMX19_04959 0.78 -0.0 423,058 - MPMX19_04959 0.78 -0.2 423,221 + -0.7 423,221 + -1.3 423,221 + -2.3 423,221 + -1.3 423,221 + +0.1 423,222 - +1.3 423,250 + -0.7 423,250 + -0.9 423,250 + -0.2 423,250 + +0.7 423,250 + -0.8 423,250 + -0.3 423,250 + -0.9 423,251 - -0.1 423,251 - -1.0 423,251 - -1.0 423,251 - -1.5 423,251 - -0.1 423,251 - -1.2 423,372 - +0.1 423,372 - -0.6 423,487 + MPMX19_04960 0.11 -0.3 423,487 + MPMX19_04960 0.11 +1.1 423,487 + MPMX19_04960 0.11 +0.3 423,488 - MPMX19_04960 0.11 -1.2 423,488 - MPMX19_04960 0.11 -1.9 423,488 - MPMX19_04960 0.11 -0.4 423,488 - MPMX19_04960 0.11 -0.3 423,488 - MPMX19_04960 0.11 -0.9 423,488 - MPMX19_04960 0.11 -0.2 423,488 - MPMX19_04960 0.11 -0.3 423,619 + MPMX19_04960 0.28 -1.1 423,794 + MPMX19_04960 0.49 +0.7 423,844 + MPMX19_04960 0.56 -2.0 423,845 - MPMX19_04960 0.56 -0.3 423,845 - MPMX19_04960 0.56 -0.6 423,905 + MPMX19_04960 0.63 -1.0 423,905 + MPMX19_04960 0.63 +0.1 423,905 + MPMX19_04960 0.63 -2.3 423,905 + MPMX19_04960 0.63 -0.5 423,905 + MPMX19_04960 0.63 -2.3 423,905 + MPMX19_04960 0.63 -1.1 423,905 + MPMX19_04960 0.63 -0.2 423,905 + MPMX19_04960 0.63 -1.2 423,905 + MPMX19_04960 0.63 -0.6 423,905 + MPMX19_04960 0.63 -0.5 423,905 + MPMX19_04960 0.63 +0.1 423,905 + MPMX19_04960 0.63 -1.2 423,905 + MPMX19_04960 0.63 -0.9 423,905 + MPMX19_04960 0.63 +0.7 423,905 + MPMX19_04960 0.63 +0.4 423,905 + MPMX19_04960 0.63 -1.8 423,905 + MPMX19_04960 0.63 -0.3 423,906 - MPMX19_04960 0.63 -1.7 423,906 - MPMX19_04960 0.63 -0.8 423,906 - MPMX19_04960 0.63 +0.5 423,906 - MPMX19_04960 0.63 -0.7 423,906 - MPMX19_04960 0.63 -1.0 423,906 - MPMX19_04960 0.63 -1.3 423,906 - MPMX19_04960 0.63 -0.6 423,906 - MPMX19_04960 0.63 -0.6 423,906 - MPMX19_04960 0.63 -0.2 423,906 - MPMX19_04960 0.63 -0.2 423,906 - MPMX19_04960 0.63 -0.2 423,906 - MPMX19_04960 0.63 -0.7 423,906 - MPMX19_04960 0.63 +0.1 423,906 - MPMX19_04960 0.63 -3.8 423,906 - MPMX19_04960 0.63 -0.7 423,907 + MPMX19_04960 0.63 +0.5 423,907 + MPMX19_04960 0.63 -1.7 423,907 + MPMX19_04960 0.63 -0.4 423,907 + MPMX19_04960 0.63 -0.9 423,907 + MPMX19_04960 0.63 -0.6 423,907 + MPMX19_04960 0.63 +1.1 423,907 + MPMX19_04960 0.63 -0.3 423,907 + MPMX19_04960 0.63 -1.7 423,907 + MPMX19_04960 0.63 -0.7 423,907 + MPMX19_04960 0.63 -0.9 423,907 + MPMX19_04960 0.63 +0.2 423,907 + MPMX19_04960 0.63 -0.1 423,907 + MPMX19_04960 0.63 -1.2 423,907 + MPMX19_04960 0.63 -2.2 423,907 + MPMX19_04960 0.63 -1.2 423,907 + MPMX19_04960 0.63 -1.8 423,907 + MPMX19_04960 0.63 -1.2 423,907 + MPMX19_04960 0.63 +0.3 423,907 + MPMX19_04960 0.63 -0.5 423,907 + MPMX19_04960 0.63 -2.3 423,908 - MPMX19_04960 0.63 -1.2 423,908 - MPMX19_04960 0.63 -1.7 423,908 - MPMX19_04960 0.63 -0.8 423,908 - MPMX19_04960 0.63 -0.5 423,908 - MPMX19_04960 0.63 -0.4 423,908 - MPMX19_04960 0.63 +0.1 423,908 - MPMX19_04960 0.63 -0.3 423,908 - MPMX19_04960 0.63 -1.0 423,908 - MPMX19_04960 0.63 -0.2 423,908 - MPMX19_04960 0.63 -0.3 423,908 - MPMX19_04960 0.63 +0.1 423,908 - MPMX19_04960 0.63 -1.4 423,908 - MPMX19_04960 0.63 -1.3 423,943 + MPMX19_04960 0.68 -0.5 423,943 + MPMX19_04960 0.68 -0.7 423,943 + MPMX19_04960 0.68 -0.6 423,943 + MPMX19_04960 0.68 -0.8 423,944 - MPMX19_04960 0.68 +0.7 424,194 + +0.3 424,194 + -0.7 424,194 + -0.1 424,195 - -0.2 424,195 - -0.4 424,268 + -0.7 424,277 + -0.0 424,278 - +0.2 424,285 - -2.0 424,497 + -0.3 424,498 - +0.1 424,608 + +0.1 424,608 + -1.7 424,706 - -0.0 424,706 - -1.2 424,792 + -0.0 424,792 + -0.1 424,792 + -0.3 424,792 + -1.9 424,792 + +1.4 424,792 + -1.7 424,792 + +0.2 424,793 - -1.1 424,815 + -0.5 424,845 + -0.5 424,845 + -0.4 424,846 - MPMX19_04961 0.10 -0.1 425,009 + MPMX19_04961 0.31 -0.8 425,009 + MPMX19_04961 0.31 -0.8 425,009 + MPMX19_04961 0.31 -0.4 425,009 + MPMX19_04961 0.31 +0.2 425,009 + MPMX19_04961 0.31 -0.7 425,009 + MPMX19_04961 0.31 +0.3 425,009 + MPMX19_04961 0.31 -1.4 425,009 + MPMX19_04961 0.31 -0.9 425,009 + MPMX19_04961 0.31 +0.4 425,009 + MPMX19_04961 0.31 +0.2 425,010 - MPMX19_04961 0.32 +0.1 425,010 - MPMX19_04961 0.32 -0.3 425,010 - MPMX19_04961 0.32 -0.6 425,010 - MPMX19_04961 0.32 +0.2 425,010 - MPMX19_04961 0.32 +0.2 425,010 - MPMX19_04961 0.32 -0.5 425,010 - MPMX19_04961 0.32 -1.5 425,010 - MPMX19_04961 0.32 -0.5 425,010 - MPMX19_04961 0.32 -0.1 425,010 - MPMX19_04961 0.32 -0.9 425,010 - MPMX19_04961 0.32 -0.6 425,010 - MPMX19_04961 0.32 +0.1 425,012 + MPMX19_04961 0.32 -1.7 425,012 + MPMX19_04961 0.32 -0.1 425,012 + MPMX19_04961 0.32 +0.3 425,012 + MPMX19_04961 0.32 -0.7 425,012 + MPMX19_04961 0.32 -1.9 425,012 + MPMX19_04961 0.32 -0.5 425,012 + MPMX19_04961 0.32 -0.9 425,012 + MPMX19_04961 0.32 +0.2 425,012 + MPMX19_04961 0.32 +0.8 425,013 - MPMX19_04961 0.32 +1.2 425,013 - MPMX19_04961 0.32 -0.0 425,013 - MPMX19_04961 0.32 -0.5 425,013 - MPMX19_04961 0.32 -1.0 425,013 - MPMX19_04961 0.32 -0.7 425,013 - MPMX19_04961 0.32 +0.9 425,013 - MPMX19_04961 0.32 +0.1 425,013 - MPMX19_04961 0.32 +0.1 425,013 - MPMX19_04961 0.32 -0.3 425,013 - MPMX19_04961 0.32 +0.4 425,051 + MPMX19_04961 0.37 +1.4 425,051 + MPMX19_04961 0.37 +0.7 425,051 + MPMX19_04961 0.37 -0.7 425,051 + MPMX19_04961 0.37 -0.3 425,051 + MPMX19_04961 0.37 +0.1 425,051 + MPMX19_04961 0.37 -0.3 425,051 + MPMX19_04961 0.37 -1.5 425,052 - MPMX19_04961 0.37 -0.5 425,052 - MPMX19_04961 0.37 -2.4 425,052 - MPMX19_04961 0.37 -0.5 425,052 - MPMX19_04961 0.37 -0.5 425,052 - MPMX19_04961 0.37 +0.3
Or see this region's nucleotide sequence