Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04956

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04954 and MPMX19_04955 are separated by 86 nucleotidesMPMX19_04955 and MPMX19_04956 are separated by 42 nucleotidesMPMX19_04956 and MPMX19_04957 overlap by 4 nucleotides MPMX19_04954: MPMX19_04954 - Putative hydro-lyase, at 417,334 to 418,122 _04954 MPMX19_04955: MPMX19_04955 - hypothetical protein, at 418,209 to 418,970 _04955 MPMX19_04956: MPMX19_04956 - 5-oxoprolinase subunit B, at 419,013 to 419,780 _04956 MPMX19_04957: MPMX19_04957 - 5-oxoprolinase subunit C, at 419,777 to 420,799 _04957 Position (kb) 419 420Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 418.154 kb on + strandat 418.329 kb on + strand, within MPMX19_04955at 418.329 kb on + strand, within MPMX19_04955at 418.329 kb on + strand, within MPMX19_04955at 418.329 kb on + strand, within MPMX19_04955at 418.329 kb on + strand, within MPMX19_04955at 418.330 kb on - strand, within MPMX19_04955at 418.330 kb on - strand, within MPMX19_04955at 418.330 kb on - strand, within MPMX19_04955at 418.330 kb on - strand, within MPMX19_04955at 418.330 kb on - strand, within MPMX19_04955at 418.330 kb on - strand, within MPMX19_04955at 418.362 kb on + strand, within MPMX19_04955at 418.362 kb on + strand, within MPMX19_04955at 418.362 kb on + strand, within MPMX19_04955at 418.363 kb on - strand, within MPMX19_04955at 418.482 kb on + strand, within MPMX19_04955at 418.482 kb on + strand, within MPMX19_04955at 418.482 kb on + strand, within MPMX19_04955at 418.482 kb on + strand, within MPMX19_04955at 418.482 kb on + strand, within MPMX19_04955at 418.483 kb on - strand, within MPMX19_04955at 418.483 kb on - strand, within MPMX19_04955at 418.515 kb on + strand, within MPMX19_04955at 418.515 kb on + strand, within MPMX19_04955at 418.515 kb on + strand, within MPMX19_04955at 418.516 kb on - strand, within MPMX19_04955at 418.516 kb on - strand, within MPMX19_04955at 418.516 kb on - strand, within MPMX19_04955at 418.516 kb on - strand, within MPMX19_04955at 418.642 kb on - strand, within MPMX19_04955at 418.712 kb on + strand, within MPMX19_04955at 418.713 kb on - strand, within MPMX19_04955at 418.767 kb on + strand, within MPMX19_04955at 418.767 kb on + strand, within MPMX19_04955at 418.767 kb on + strand, within MPMX19_04955at 418.768 kb on - strand, within MPMX19_04955at 418.768 kb on - strand, within MPMX19_04955at 418.768 kb on - strand, within MPMX19_04955at 418.768 kb on - strand, within MPMX19_04955at 418.768 kb on - strand, within MPMX19_04955at 418.768 kb on - strand, within MPMX19_04955at 418.768 kb on - strand, within MPMX19_04955at 418.768 kb on - strand, within MPMX19_04955at 418.779 kb on + strand, within MPMX19_04955at 418.780 kb on - strand, within MPMX19_04955at 418.780 kb on - strand, within MPMX19_04955at 418.780 kb on - strand, within MPMX19_04955at 418.851 kb on + strand, within MPMX19_04955at 418.851 kb on + strand, within MPMX19_04955at 418.851 kb on + strand, within MPMX19_04955at 418.851 kb on + strand, within MPMX19_04955at 418.851 kb on + strand, within MPMX19_04955at 418.852 kb on - strand, within MPMX19_04955at 418.852 kb on - strand, within MPMX19_04955at 418.852 kb on - strand, within MPMX19_04955at 418.852 kb on - strand, within MPMX19_04955at 418.852 kb on - strand, within MPMX19_04955at 418.959 kb on + strandat 418.959 kb on + strandat 418.960 kb on - strandat 418.960 kb on - strandat 418.960 kb on - strandat 419.184 kb on + strand, within MPMX19_04956at 419.184 kb on + strand, within MPMX19_04956at 419.184 kb on + strand, within MPMX19_04956at 419.184 kb on + strand, within MPMX19_04956at 419.184 kb on + strand, within MPMX19_04956at 419.184 kb on + strand, within MPMX19_04956at 419.185 kb on - strand, within MPMX19_04956at 419.251 kb on + strand, within MPMX19_04956at 419.251 kb on + strand, within MPMX19_04956at 419.251 kb on + strand, within MPMX19_04956at 419.252 kb on - strand, within MPMX19_04956at 419.413 kb on - strand, within MPMX19_04956at 419.421 kb on + strand, within MPMX19_04956at 419.421 kb on + strand, within MPMX19_04956at 419.421 kb on + strand, within MPMX19_04956at 419.421 kb on + strand, within MPMX19_04956at 419.421 kb on + strand, within MPMX19_04956at 419.421 kb on + strand, within MPMX19_04956at 419.421 kb on + strand, within MPMX19_04956at 419.421 kb on + strand, within MPMX19_04956at 419.422 kb on - strand, within MPMX19_04956at 419.422 kb on - strand, within MPMX19_04956at 419.422 kb on - strand, within MPMX19_04956at 419.422 kb on - strand, within MPMX19_04956at 419.422 kb on - strand, within MPMX19_04956at 419.422 kb on - strand, within MPMX19_04956at 419.422 kb on - strand, within MPMX19_04956at 419.451 kb on + strand, within MPMX19_04956at 419.451 kb on + strand, within MPMX19_04956at 419.452 kb on - strand, within MPMX19_04956at 419.452 kb on - strand, within MPMX19_04956at 419.691 kb on + strand, within MPMX19_04956at 419.709 kb on - strandat 419.709 kb on - strandat 419.719 kb on - strandat 419.740 kb on + strandat 419.740 kb on + strandat 419.741 kb on - strandat 419.855 kb on + strandat 420.119 kb on + strand, within MPMX19_04957at 420.120 kb on - strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.190 kb on + strand, within MPMX19_04957at 420.190 kb on + strand, within MPMX19_04957at 420.344 kb on + strand, within MPMX19_04957at 420.344 kb on + strand, within MPMX19_04957at 420.344 kb on + strand, within MPMX19_04957at 420.344 kb on + strand, within MPMX19_04957at 420.344 kb on + strand, within MPMX19_04957at 420.345 kb on - strand, within MPMX19_04957at 420.345 kb on - strand, within MPMX19_04957at 420.345 kb on - strand, within MPMX19_04957at 420.345 kb on - strand, within MPMX19_04957at 420.345 kb on - strand, within MPMX19_04957at 420.345 kb on - strand, within MPMX19_04957at 420.386 kb on + strand, within MPMX19_04957at 420.386 kb on + strand, within MPMX19_04957at 420.386 kb on + strand, within MPMX19_04957at 420.386 kb on + strand, within MPMX19_04957at 420.386 kb on + strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.591 kb on + strand, within MPMX19_04957at 420.592 kb on - strand, within MPMX19_04957at 420.592 kb on - strand, within MPMX19_04957at 420.737 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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418,154 + -0.0
418,329 + MPMX19_04955 0.16 -0.4
418,329 + MPMX19_04955 0.16 -0.8
418,329 + MPMX19_04955 0.16 -0.2
418,329 + MPMX19_04955 0.16 +0.5
418,329 + MPMX19_04955 0.16 -0.3
418,330 - MPMX19_04955 0.16 -0.5
418,330 - MPMX19_04955 0.16 -1.7
418,330 - MPMX19_04955 0.16 -0.9
418,330 - MPMX19_04955 0.16 -2.3
418,330 - MPMX19_04955 0.16 -1.1
418,330 - MPMX19_04955 0.16 -0.1
418,362 + MPMX19_04955 0.20 +0.2
418,362 + MPMX19_04955 0.20 +0.9
418,362 + MPMX19_04955 0.20 -1.7
418,363 - MPMX19_04955 0.20 -1.2
418,482 + MPMX19_04955 0.36 -2.9
418,482 + MPMX19_04955 0.36 -1.0
418,482 + MPMX19_04955 0.36 -0.3
418,482 + MPMX19_04955 0.36 +1.2
418,482 + MPMX19_04955 0.36 -1.9
418,483 - MPMX19_04955 0.36 -0.8
418,483 - MPMX19_04955 0.36 -1.7
418,515 + MPMX19_04955 0.40 +0.1
418,515 + MPMX19_04955 0.40 +0.1
418,515 + MPMX19_04955 0.40 +0.7
418,516 - MPMX19_04955 0.40 -0.2
418,516 - MPMX19_04955 0.40 -0.1
418,516 - MPMX19_04955 0.40 +0.2
418,516 - MPMX19_04955 0.40 -0.8
418,642 - MPMX19_04955 0.57 +0.5
418,712 + MPMX19_04955 0.66 +0.3
418,713 - MPMX19_04955 0.66 -0.9
418,767 + MPMX19_04955 0.73 -0.1
418,767 + MPMX19_04955 0.73 -1.0
418,767 + MPMX19_04955 0.73 -1.0
418,768 - MPMX19_04955 0.73 -1.0
418,768 - MPMX19_04955 0.73 -1.2
418,768 - MPMX19_04955 0.73 -1.7
418,768 - MPMX19_04955 0.73 +0.5
418,768 - MPMX19_04955 0.73 -0.6
418,768 - MPMX19_04955 0.73 +0.3
418,768 - MPMX19_04955 0.73 +2.2
418,768 - MPMX19_04955 0.73 -1.7
418,779 + MPMX19_04955 0.75 -1.3
418,780 - MPMX19_04955 0.75 -0.8
418,780 - MPMX19_04955 0.75 -0.5
418,780 - MPMX19_04955 0.75 -0.9
418,851 + MPMX19_04955 0.84 -0.5
418,851 + MPMX19_04955 0.84 -1.1
418,851 + MPMX19_04955 0.84 -1.5
418,851 + MPMX19_04955 0.84 +0.3
418,851 + MPMX19_04955 0.84 -0.2
418,852 - MPMX19_04955 0.84 -0.7
418,852 - MPMX19_04955 0.84 -1.3
418,852 - MPMX19_04955 0.84 -0.5
418,852 - MPMX19_04955 0.84 -0.8
418,852 - MPMX19_04955 0.84 -1.3
418,959 + +0.2
418,959 + +0.7
418,960 - -0.9
418,960 - -1.3
418,960 - -0.3
419,184 + MPMX19_04956 0.22 -2.6
419,184 + MPMX19_04956 0.22 -0.5
419,184 + MPMX19_04956 0.22 -1.0
419,184 + MPMX19_04956 0.22 +0.3
419,184 + MPMX19_04956 0.22 -0.3
419,184 + MPMX19_04956 0.22 -1.0
419,185 - MPMX19_04956 0.22 -0.5
419,251 + MPMX19_04956 0.31 -0.3
419,251 + MPMX19_04956 0.31 -0.3
419,251 + MPMX19_04956 0.31 +0.1
419,252 - MPMX19_04956 0.31 -1.9
419,413 - MPMX19_04956 0.52 -1.3
419,421 + MPMX19_04956 0.53 -0.3
419,421 + MPMX19_04956 0.53 -0.9
419,421 + MPMX19_04956 0.53 -0.6
419,421 + MPMX19_04956 0.53 -0.7
419,421 + MPMX19_04956 0.53 +0.1
419,421 + MPMX19_04956 0.53 +0.0
419,421 + MPMX19_04956 0.53 +0.1
419,421 + MPMX19_04956 0.53 +0.1
419,422 - MPMX19_04956 0.53 -1.3
419,422 - MPMX19_04956 0.53 -1.0
419,422 - MPMX19_04956 0.53 +0.3
419,422 - MPMX19_04956 0.53 -1.3
419,422 - MPMX19_04956 0.53 -0.4
419,422 - MPMX19_04956 0.53 -1.9
419,422 - MPMX19_04956 0.53 -0.9
419,451 + MPMX19_04956 0.57 -1.3
419,451 + MPMX19_04956 0.57 -0.9
419,452 - MPMX19_04956 0.57 -1.6
419,452 - MPMX19_04956 0.57 -0.7
419,691 + MPMX19_04956 0.88 +2.2
419,709 - -0.2
419,709 - -1.0
419,719 - -1.7
419,740 + +0.5
419,740 + +1.2
419,741 - -1.3
419,855 + -0.8
420,119 + MPMX19_04957 0.33 -1.4
420,120 - MPMX19_04957 0.34 -0.2
420,180 + MPMX19_04957 0.39 -1.5
420,180 + MPMX19_04957 0.39 +1.7
420,180 + MPMX19_04957 0.39 -1.2
420,180 + MPMX19_04957 0.39 -1.4
420,180 + MPMX19_04957 0.39 +0.1
420,180 + MPMX19_04957 0.39 -0.8
420,180 + MPMX19_04957 0.39 -0.5
420,180 + MPMX19_04957 0.39 -0.7
420,181 - MPMX19_04957 0.39 -0.3
420,181 - MPMX19_04957 0.39 -0.4
420,181 - MPMX19_04957 0.39 -0.1
420,181 - MPMX19_04957 0.39 -0.3
420,181 - MPMX19_04957 0.39 -1.4
420,181 - MPMX19_04957 0.39 -0.0
420,181 - MPMX19_04957 0.39 -0.9
420,181 - MPMX19_04957 0.39 -2.0
420,181 - MPMX19_04957 0.39 -0.9
420,190 + MPMX19_04957 0.40 -0.9
420,190 + MPMX19_04957 0.40 -0.3
420,344 + MPMX19_04957 0.55 +0.7
420,344 + MPMX19_04957 0.55 +1.7
420,344 + MPMX19_04957 0.55 -0.6
420,344 + MPMX19_04957 0.55 +0.2
420,344 + MPMX19_04957 0.55 -1.4
420,345 - MPMX19_04957 0.56 -0.6
420,345 - MPMX19_04957 0.56 -0.1
420,345 - MPMX19_04957 0.56 +0.8
420,345 - MPMX19_04957 0.56 +0.0
420,345 - MPMX19_04957 0.56 +1.9
420,345 - MPMX19_04957 0.56 -0.1
420,386 + MPMX19_04957 0.60 +0.3
420,386 + MPMX19_04957 0.60 -1.3
420,386 + MPMX19_04957 0.60 +1.4
420,386 + MPMX19_04957 0.60 -1.0
420,386 + MPMX19_04957 0.60 -1.3
420,387 - MPMX19_04957 0.60 -0.6
420,387 - MPMX19_04957 0.60 -0.4
420,387 - MPMX19_04957 0.60 -1.7
420,387 - MPMX19_04957 0.60 +0.8
420,387 - MPMX19_04957 0.60 +0.1
420,387 - MPMX19_04957 0.60 -0.2
420,387 - MPMX19_04957 0.60 -1.0
420,387 - MPMX19_04957 0.60 -0.7
420,387 - MPMX19_04957 0.60 -0.7
420,591 + MPMX19_04957 0.80 -1.4
420,592 - MPMX19_04957 0.80 -0.3
420,592 - MPMX19_04957 0.80 -0.3
420,737 + -1.0

Or see this region's nucleotide sequence