Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04954

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04952 and MPMX19_04953 are separated by 4 nucleotidesMPMX19_04953 and MPMX19_04954 are separated by 54 nucleotidesMPMX19_04954 and MPMX19_04955 are separated by 86 nucleotidesMPMX19_04955 and MPMX19_04956 are separated by 42 nucleotides MPMX19_04952: MPMX19_04952 - Lipopolysaccharide export system ATP-binding protein LptB, at 415,782 to 416,501 _04952 MPMX19_04953: MPMX19_04953 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 416,506 to 417,279 _04953 MPMX19_04954: MPMX19_04954 - Putative hydro-lyase, at 417,334 to 418,122 _04954 MPMX19_04955: MPMX19_04955 - hypothetical protein, at 418,209 to 418,970 _04955 MPMX19_04956: MPMX19_04956 - 5-oxoprolinase subunit B, at 419,013 to 419,780 _04956 Position (kb) 417 418 419Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 416.421 kb on + strand, within MPMX19_04952at 416.421 kb on + strand, within MPMX19_04952at 416.487 kb on + strandat 416.488 kb on - strandat 416.488 kb on - strandat 416.488 kb on - strandat 416.605 kb on + strand, within MPMX19_04953at 416.926 kb on + strand, within MPMX19_04953at 417.187 kb on + strand, within MPMX19_04953at 417.187 kb on + strand, within MPMX19_04953at 417.188 kb on - strand, within MPMX19_04953at 417.188 kb on - strand, within MPMX19_04953at 417.188 kb on - strand, within MPMX19_04953at 417.188 kb on - strand, within MPMX19_04953at 417.188 kb on - strand, within MPMX19_04953at 417.265 kb on + strandat 417.265 kb on + strandat 417.265 kb on + strandat 417.266 kb on - strandat 417.266 kb on - strandat 417.266 kb on - strandat 417.266 kb on - strandat 417.266 kb on - strandat 417.601 kb on + strand, within MPMX19_04954at 417.763 kb on + strand, within MPMX19_04954at 417.763 kb on + strand, within MPMX19_04954at 417.763 kb on + strand, within MPMX19_04954at 417.763 kb on + strand, within MPMX19_04954at 417.763 kb on + strand, within MPMX19_04954at 417.763 kb on + strand, within MPMX19_04954at 417.764 kb on - strand, within MPMX19_04954at 417.764 kb on - strand, within MPMX19_04954at 417.936 kb on + strand, within MPMX19_04954at 417.936 kb on + strand, within MPMX19_04954at 417.937 kb on - strand, within MPMX19_04954at 418.154 kb on + strandat 418.329 kb on + strand, within MPMX19_04955at 418.329 kb on + strand, within MPMX19_04955at 418.329 kb on + strand, within MPMX19_04955at 418.329 kb on + strand, within MPMX19_04955at 418.329 kb on + strand, within MPMX19_04955at 418.330 kb on - strand, within MPMX19_04955at 418.330 kb on - strand, within MPMX19_04955at 418.330 kb on - strand, within MPMX19_04955at 418.330 kb on - strand, within MPMX19_04955at 418.330 kb on - strand, within MPMX19_04955at 418.330 kb on - strand, within MPMX19_04955at 418.362 kb on + strand, within MPMX19_04955at 418.362 kb on + strand, within MPMX19_04955at 418.362 kb on + strand, within MPMX19_04955at 418.363 kb on - strand, within MPMX19_04955at 418.482 kb on + strand, within MPMX19_04955at 418.482 kb on + strand, within MPMX19_04955at 418.482 kb on + strand, within MPMX19_04955at 418.482 kb on + strand, within MPMX19_04955at 418.482 kb on + strand, within MPMX19_04955at 418.483 kb on - strand, within MPMX19_04955at 418.483 kb on - strand, within MPMX19_04955at 418.515 kb on + strand, within MPMX19_04955at 418.515 kb on + strand, within MPMX19_04955at 418.515 kb on + strand, within MPMX19_04955at 418.516 kb on - strand, within MPMX19_04955at 418.516 kb on - strand, within MPMX19_04955at 418.516 kb on - strand, within MPMX19_04955at 418.516 kb on - strand, within MPMX19_04955at 418.642 kb on - strand, within MPMX19_04955at 418.712 kb on + strand, within MPMX19_04955at 418.713 kb on - strand, within MPMX19_04955at 418.767 kb on + strand, within MPMX19_04955at 418.767 kb on + strand, within MPMX19_04955at 418.767 kb on + strand, within MPMX19_04955at 418.768 kb on - strand, within MPMX19_04955at 418.768 kb on - strand, within MPMX19_04955at 418.768 kb on - strand, within MPMX19_04955at 418.768 kb on - strand, within MPMX19_04955at 418.768 kb on - strand, within MPMX19_04955at 418.768 kb on - strand, within MPMX19_04955at 418.768 kb on - strand, within MPMX19_04955at 418.768 kb on - strand, within MPMX19_04955at 418.779 kb on + strand, within MPMX19_04955at 418.780 kb on - strand, within MPMX19_04955at 418.780 kb on - strand, within MPMX19_04955at 418.780 kb on - strand, within MPMX19_04955at 418.851 kb on + strand, within MPMX19_04955at 418.851 kb on + strand, within MPMX19_04955at 418.851 kb on + strand, within MPMX19_04955at 418.851 kb on + strand, within MPMX19_04955at 418.851 kb on + strand, within MPMX19_04955at 418.852 kb on - strand, within MPMX19_04955at 418.852 kb on - strand, within MPMX19_04955at 418.852 kb on - strand, within MPMX19_04955at 418.852 kb on - strand, within MPMX19_04955at 418.852 kb on - strand, within MPMX19_04955at 418.959 kb on + strandat 418.959 kb on + strandat 418.960 kb on - strandat 418.960 kb on - strandat 418.960 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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416,421 + MPMX19_04952 0.89 +0.8
416,421 + MPMX19_04952 0.89 -0.0
416,487 + -0.5
416,488 - -1.4
416,488 - -0.7
416,488 - +0.3
416,605 + MPMX19_04953 0.13 -0.1
416,926 + MPMX19_04953 0.54 -1.2
417,187 + MPMX19_04953 0.88 +0.6
417,187 + MPMX19_04953 0.88 -0.3
417,188 - MPMX19_04953 0.88 -1.6
417,188 - MPMX19_04953 0.88 -0.6
417,188 - MPMX19_04953 0.88 -0.5
417,188 - MPMX19_04953 0.88 -0.8
417,188 - MPMX19_04953 0.88 -1.2
417,265 + -0.6
417,265 + -0.2
417,265 + -0.3
417,266 - -0.2
417,266 - -0.9
417,266 - -1.3
417,266 - -0.6
417,266 - -1.0
417,601 + MPMX19_04954 0.34 -1.6
417,763 + MPMX19_04954 0.54 -0.9
417,763 + MPMX19_04954 0.54 -0.2
417,763 + MPMX19_04954 0.54 -1.3
417,763 + MPMX19_04954 0.54 -2.0
417,763 + MPMX19_04954 0.54 +0.2
417,763 + MPMX19_04954 0.54 +0.1
417,764 - MPMX19_04954 0.54 -1.4
417,764 - MPMX19_04954 0.54 -0.8
417,936 + MPMX19_04954 0.76 -1.7
417,936 + MPMX19_04954 0.76 -1.8
417,937 - MPMX19_04954 0.76 +1.2
418,154 + -0.0
418,329 + MPMX19_04955 0.16 -0.4
418,329 + MPMX19_04955 0.16 -0.8
418,329 + MPMX19_04955 0.16 -0.2
418,329 + MPMX19_04955 0.16 +0.5
418,329 + MPMX19_04955 0.16 -0.3
418,330 - MPMX19_04955 0.16 -0.5
418,330 - MPMX19_04955 0.16 -1.7
418,330 - MPMX19_04955 0.16 -0.9
418,330 - MPMX19_04955 0.16 -2.3
418,330 - MPMX19_04955 0.16 -1.1
418,330 - MPMX19_04955 0.16 -0.1
418,362 + MPMX19_04955 0.20 +0.2
418,362 + MPMX19_04955 0.20 +0.9
418,362 + MPMX19_04955 0.20 -1.7
418,363 - MPMX19_04955 0.20 -1.2
418,482 + MPMX19_04955 0.36 -2.9
418,482 + MPMX19_04955 0.36 -1.0
418,482 + MPMX19_04955 0.36 -0.3
418,482 + MPMX19_04955 0.36 +1.2
418,482 + MPMX19_04955 0.36 -1.9
418,483 - MPMX19_04955 0.36 -0.8
418,483 - MPMX19_04955 0.36 -1.7
418,515 + MPMX19_04955 0.40 +0.1
418,515 + MPMX19_04955 0.40 +0.1
418,515 + MPMX19_04955 0.40 +0.7
418,516 - MPMX19_04955 0.40 -0.2
418,516 - MPMX19_04955 0.40 -0.1
418,516 - MPMX19_04955 0.40 +0.2
418,516 - MPMX19_04955 0.40 -0.8
418,642 - MPMX19_04955 0.57 +0.5
418,712 + MPMX19_04955 0.66 +0.3
418,713 - MPMX19_04955 0.66 -0.9
418,767 + MPMX19_04955 0.73 -0.1
418,767 + MPMX19_04955 0.73 -1.0
418,767 + MPMX19_04955 0.73 -1.0
418,768 - MPMX19_04955 0.73 -1.0
418,768 - MPMX19_04955 0.73 -1.2
418,768 - MPMX19_04955 0.73 -1.7
418,768 - MPMX19_04955 0.73 +0.5
418,768 - MPMX19_04955 0.73 -0.6
418,768 - MPMX19_04955 0.73 +0.3
418,768 - MPMX19_04955 0.73 +2.2
418,768 - MPMX19_04955 0.73 -1.7
418,779 + MPMX19_04955 0.75 -1.3
418,780 - MPMX19_04955 0.75 -0.8
418,780 - MPMX19_04955 0.75 -0.5
418,780 - MPMX19_04955 0.75 -0.9
418,851 + MPMX19_04955 0.84 -0.5
418,851 + MPMX19_04955 0.84 -1.1
418,851 + MPMX19_04955 0.84 -1.5
418,851 + MPMX19_04955 0.84 +0.3
418,851 + MPMX19_04955 0.84 -0.2
418,852 - MPMX19_04955 0.84 -0.7
418,852 - MPMX19_04955 0.84 -1.3
418,852 - MPMX19_04955 0.84 -0.5
418,852 - MPMX19_04955 0.84 -0.8
418,852 - MPMX19_04955 0.84 -1.3
418,959 + +0.2
418,959 + +0.7
418,960 - -0.9
418,960 - -1.3
418,960 - -0.3

Or see this region's nucleotide sequence