Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04938

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04936 and MPMX19_04937 are separated by 51 nucleotidesMPMX19_04937 and MPMX19_04938 overlap by 4 nucleotidesMPMX19_04938 and MPMX19_04939 are separated by 96 nucleotides MPMX19_04936: MPMX19_04936 - Urocanate hydratase, at 398,132 to 399,814 _04936 MPMX19_04937: MPMX19_04937 - Mannosyl-D-glycerate transport/metabolism system repressor MngR, at 399,866 to 400,594 _04937 MPMX19_04938: MPMX19_04938 - Imidazolonepropionase, at 400,591 to 401,844 _04938 MPMX19_04939: MPMX19_04939 - 8-oxoguanine deaminase, at 401,941 to 403,305 _04939 Position (kb) 400 401 402Strain fitness (log2 ratio) -2 -1 0 1 2at 399.663 kb on + strandat 399.664 kb on - strandat 399.664 kb on - strandat 400.086 kb on + strand, within MPMX19_04937at 400.086 kb on + strand, within MPMX19_04937at 400.086 kb on + strand, within MPMX19_04937at 400.086 kb on + strand, within MPMX19_04937at 400.087 kb on - strand, within MPMX19_04937at 400.087 kb on - strand, within MPMX19_04937at 400.125 kb on + strand, within MPMX19_04937at 400.125 kb on + strand, within MPMX19_04937at 400.125 kb on + strand, within MPMX19_04937at 400.126 kb on - strand, within MPMX19_04937at 400.431 kb on - strand, within MPMX19_04937at 400.431 kb on - strand, within MPMX19_04937at 400.561 kb on - strandat 400.561 kb on - strandat 400.667 kb on - strandat 400.673 kb on + strandat 400.673 kb on + strandat 400.673 kb on + strandat 400.674 kb on - strandat 400.958 kb on + strand, within MPMX19_04938at 400.958 kb on + strand, within MPMX19_04938at 400.958 kb on + strand, within MPMX19_04938at 400.958 kb on + strand, within MPMX19_04938at 400.958 kb on + strand, within MPMX19_04938at 400.958 kb on + strand, within MPMX19_04938at 400.958 kb on + strand, within MPMX19_04938at 400.958 kb on + strand, within MPMX19_04938at 400.958 kb on + strand, within MPMX19_04938at 400.959 kb on - strand, within MPMX19_04938at 400.959 kb on - strand, within MPMX19_04938at 401.264 kb on + strand, within MPMX19_04938at 401.265 kb on - strand, within MPMX19_04938at 401.315 kb on + strand, within MPMX19_04938at 401.315 kb on + strand, within MPMX19_04938at 401.315 kb on + strand, within MPMX19_04938at 401.315 kb on + strand, within MPMX19_04938at 401.315 kb on + strand, within MPMX19_04938at 401.315 kb on + strand, within MPMX19_04938at 401.315 kb on + strand, within MPMX19_04938at 401.315 kb on + strand, within MPMX19_04938at 401.315 kb on + strand, within MPMX19_04938at 401.315 kb on + strand, within MPMX19_04938at 401.315 kb on + strand, within MPMX19_04938at 401.316 kb on - strand, within MPMX19_04938at 401.316 kb on - strand, within MPMX19_04938at 401.316 kb on - strand, within MPMX19_04938at 401.316 kb on - strand, within MPMX19_04938at 401.316 kb on - strand, within MPMX19_04938at 401.316 kb on - strand, within MPMX19_04938at 401.316 kb on - strand, within MPMX19_04938at 401.316 kb on - strand, within MPMX19_04938at 401.316 kb on - strand, within MPMX19_04938at 401.316 kb on - strand, within MPMX19_04938at 401.316 kb on - strand, within MPMX19_04938at 401.316 kb on - strand, within MPMX19_04938at 401.552 kb on + strand, within MPMX19_04938at 401.552 kb on + strand, within MPMX19_04938at 401.552 kb on + strand, within MPMX19_04938at 401.552 kb on + strand, within MPMX19_04938at 401.552 kb on + strand, within MPMX19_04938at 401.552 kb on + strand, within MPMX19_04938at 401.552 kb on + strand, within MPMX19_04938at 401.552 kb on + strand, within MPMX19_04938at 401.552 kb on + strand, within MPMX19_04938at 401.552 kb on + strand, within MPMX19_04938at 401.552 kb on + strand, within MPMX19_04938at 401.552 kb on + strand, within MPMX19_04938at 401.552 kb on + strand, within MPMX19_04938at 401.552 kb on + strand, within MPMX19_04938at 401.552 kb on + strand, within MPMX19_04938at 401.553 kb on - strand, within MPMX19_04938at 401.553 kb on - strand, within MPMX19_04938at 401.553 kb on - strand, within MPMX19_04938at 401.553 kb on - strand, within MPMX19_04938at 401.553 kb on - strand, within MPMX19_04938at 401.553 kb on - strand, within MPMX19_04938at 401.553 kb on - strand, within MPMX19_04938at 401.553 kb on - strand, within MPMX19_04938at 401.553 kb on - strand, within MPMX19_04938at 401.553 kb on - strand, within MPMX19_04938at 401.553 kb on - strand, within MPMX19_04938at 401.553 kb on - strand, within MPMX19_04938at 401.603 kb on + strand, within MPMX19_04938at 401.604 kb on - strand, within MPMX19_04938at 401.604 kb on - strand, within MPMX19_04938at 401.604 kb on - strand, within MPMX19_04938at 401.861 kb on + strandat 401.861 kb on + strandat 401.862 kb on - strandat 401.862 kb on - strandat 401.862 kb on - strandat 401.901 kb on - strandat 401.902 kb on + strandat 402.199 kb on + strand, within MPMX19_04939at 402.199 kb on + strand, within MPMX19_04939at 402.199 kb on + strand, within MPMX19_04939at 402.199 kb on + strand, within MPMX19_04939at 402.199 kb on + strand, within MPMX19_04939at 402.199 kb on + strand, within MPMX19_04939at 402.200 kb on - strand, within MPMX19_04939at 402.200 kb on - strand, within MPMX19_04939at 402.200 kb on - strand, within MPMX19_04939at 402.256 kb on + strand, within MPMX19_04939at 402.256 kb on + strand, within MPMX19_04939at 402.256 kb on + strand, within MPMX19_04939at 402.256 kb on + strand, within MPMX19_04939at 402.256 kb on + strand, within MPMX19_04939at 402.256 kb on + strand, within MPMX19_04939at 402.256 kb on + strand, within MPMX19_04939at 402.256 kb on + strand, within MPMX19_04939at 402.256 kb on - strand, within MPMX19_04939at 402.257 kb on - strand, within MPMX19_04939at 402.257 kb on - strand, within MPMX19_04939at 402.257 kb on - strand, within MPMX19_04939at 402.257 kb on - strand, within MPMX19_04939at 402.257 kb on - strand, within MPMX19_04939at 402.257 kb on - strand, within MPMX19_04939at 402.257 kb on - strand, within MPMX19_04939at 402.300 kb on - strand, within MPMX19_04939at 402.304 kb on + strand, within MPMX19_04939at 402.305 kb on - strand, within MPMX19_04939at 402.305 kb on - strand, within MPMX19_04939at 402.305 kb on - strand, within MPMX19_04939at 402.305 kb on - strand, within MPMX19_04939at 402.305 kb on - strand, within MPMX19_04939at 402.335 kb on - strand, within MPMX19_04939at 402.335 kb on - strand, within MPMX19_04939at 402.335 kb on - strand, within MPMX19_04939at 402.418 kb on + strand, within MPMX19_04939at 402.418 kb on + strand, within MPMX19_04939at 402.418 kb on + strand, within MPMX19_04939at 402.418 kb on + strand, within MPMX19_04939at 402.418 kb on + strand, within MPMX19_04939at 402.418 kb on + strand, within MPMX19_04939at 402.419 kb on - strand, within MPMX19_04939at 402.419 kb on - strand, within MPMX19_04939at 402.419 kb on - strand, within MPMX19_04939at 402.419 kb on - strand, within MPMX19_04939at 402.419 kb on - strand, within MPMX19_04939at 402.419 kb on - strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.519 kb on + strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.520 kb on - strand, within MPMX19_04939at 402.523 kb on + strand, within MPMX19_04939at 402.523 kb on + strand, within MPMX19_04939at 402.523 kb on + strand, within MPMX19_04939at 402.523 kb on + strand, within MPMX19_04939at 402.523 kb on + strand, within MPMX19_04939at 402.523 kb on + strand, within MPMX19_04939at 402.523 kb on + strand, within MPMX19_04939at 402.523 kb on + strand, within MPMX19_04939at 402.524 kb on - strand, within MPMX19_04939at 402.524 kb on - strand, within MPMX19_04939at 402.524 kb on - strand, within MPMX19_04939at 402.524 kb on - strand, within MPMX19_04939at 402.524 kb on - strand, within MPMX19_04939at 402.524 kb on - strand, within MPMX19_04939at 402.524 kb on - strand, within MPMX19_04939at 402.524 kb on - strand, within MPMX19_04939at 402.524 kb on - strand, within MPMX19_04939at 402.524 kb on - strand, within MPMX19_04939at 402.679 kb on + strand, within MPMX19_04939

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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399,663 + -0.9
399,664 - +0.9
399,664 - +1.2
400,086 + MPMX19_04937 0.30 -0.7
400,086 + MPMX19_04937 0.30 -1.2
400,086 + MPMX19_04937 0.30 -1.4
400,086 + MPMX19_04937 0.30 +0.6
400,087 - MPMX19_04937 0.30 -2.4
400,087 - MPMX19_04937 0.30 -0.5
400,125 + MPMX19_04937 0.36 -2.1
400,125 + MPMX19_04937 0.36 +0.4
400,125 + MPMX19_04937 0.36 -1.2
400,126 - MPMX19_04937 0.36 +1.1
400,431 - MPMX19_04937 0.78 +0.1
400,431 - MPMX19_04937 0.78 -1.1
400,561 - -1.6
400,561 - -0.7
400,667 - +0.9
400,673 + +0.4
400,673 + +0.5
400,673 + -0.4
400,674 - -0.6
400,958 + MPMX19_04938 0.29 -2.0
400,958 + MPMX19_04938 0.29 -0.4
400,958 + MPMX19_04938 0.29 -0.2
400,958 + MPMX19_04938 0.29 +0.6
400,958 + MPMX19_04938 0.29 +0.4
400,958 + MPMX19_04938 0.29 +0.4
400,958 + MPMX19_04938 0.29 -1.3
400,958 + MPMX19_04938 0.29 +0.6
400,958 + MPMX19_04938 0.29 +0.3
400,959 - MPMX19_04938 0.29 -1.5
400,959 - MPMX19_04938 0.29 +0.5
401,264 + MPMX19_04938 0.54 -0.3
401,265 - MPMX19_04938 0.54 -1.4
401,315 + MPMX19_04938 0.58 -1.9
401,315 + MPMX19_04938 0.58 -0.4
401,315 + MPMX19_04938 0.58 -0.7
401,315 + MPMX19_04938 0.58 -2.2
401,315 + MPMX19_04938 0.58 -0.4
401,315 + MPMX19_04938 0.58 -1.1
401,315 + MPMX19_04938 0.58 -0.2
401,315 + MPMX19_04938 0.58 -1.4
401,315 + MPMX19_04938 0.58 -0.5
401,315 + MPMX19_04938 0.58 +0.6
401,315 + MPMX19_04938 0.58 -1.2
401,316 - MPMX19_04938 0.58 -0.9
401,316 - MPMX19_04938 0.58 -2.2
401,316 - MPMX19_04938 0.58 +0.5
401,316 - MPMX19_04938 0.58 +0.1
401,316 - MPMX19_04938 0.58 -1.5
401,316 - MPMX19_04938 0.58 -0.1
401,316 - MPMX19_04938 0.58 +0.3
401,316 - MPMX19_04938 0.58 -0.5
401,316 - MPMX19_04938 0.58 -0.7
401,316 - MPMX19_04938 0.58 -0.9
401,316 - MPMX19_04938 0.58 -0.8
401,316 - MPMX19_04938 0.58 -0.4
401,552 + MPMX19_04938 0.77 +0.5
401,552 + MPMX19_04938 0.77 -0.7
401,552 + MPMX19_04938 0.77 -1.9
401,552 + MPMX19_04938 0.77 +0.1
401,552 + MPMX19_04938 0.77 -0.7
401,552 + MPMX19_04938 0.77 -1.3
401,552 + MPMX19_04938 0.77 -0.5
401,552 + MPMX19_04938 0.77 +1.4
401,552 + MPMX19_04938 0.77 -0.7
401,552 + MPMX19_04938 0.77 -1.2
401,552 + MPMX19_04938 0.77 -0.0
401,552 + MPMX19_04938 0.77 -1.2
401,552 + MPMX19_04938 0.77 -0.4
401,552 + MPMX19_04938 0.77 +0.3
401,552 + MPMX19_04938 0.77 -2.3
401,553 - MPMX19_04938 0.77 -1.8
401,553 - MPMX19_04938 0.77 -0.4
401,553 - MPMX19_04938 0.77 -0.5
401,553 - MPMX19_04938 0.77 -1.4
401,553 - MPMX19_04938 0.77 -2.4
401,553 - MPMX19_04938 0.77 -0.4
401,553 - MPMX19_04938 0.77 -0.9
401,553 - MPMX19_04938 0.77 -1.2
401,553 - MPMX19_04938 0.77 -1.0
401,553 - MPMX19_04938 0.77 -1.5
401,553 - MPMX19_04938 0.77 +0.5
401,553 - MPMX19_04938 0.77 -1.1
401,603 + MPMX19_04938 0.81 +0.1
401,604 - MPMX19_04938 0.81 -1.5
401,604 - MPMX19_04938 0.81 -2.4
401,604 - MPMX19_04938 0.81 -1.2
401,861 + +1.0
401,861 + -0.1
401,862 - -2.6
401,862 - -1.0
401,862 - -0.1
401,901 - -0.7
401,902 + -1.0
402,199 + MPMX19_04939 0.19 +0.5
402,199 + MPMX19_04939 0.19 -0.1
402,199 + MPMX19_04939 0.19 -0.6
402,199 + MPMX19_04939 0.19 -0.1
402,199 + MPMX19_04939 0.19 -1.8
402,199 + MPMX19_04939 0.19 +1.0
402,200 - MPMX19_04939 0.19 -0.9
402,200 - MPMX19_04939 0.19 -0.9
402,200 - MPMX19_04939 0.19 +0.1
402,256 + MPMX19_04939 0.23 -0.5
402,256 + MPMX19_04939 0.23 -1.3
402,256 + MPMX19_04939 0.23 -0.5
402,256 + MPMX19_04939 0.23 -0.2
402,256 + MPMX19_04939 0.23 -0.2
402,256 + MPMX19_04939 0.23 -1.5
402,256 + MPMX19_04939 0.23 -0.7
402,256 + MPMX19_04939 0.23 -1.1
402,256 - MPMX19_04939 0.23 +0.2
402,257 - MPMX19_04939 0.23 +0.2
402,257 - MPMX19_04939 0.23 -0.9
402,257 - MPMX19_04939 0.23 -0.9
402,257 - MPMX19_04939 0.23 +0.6
402,257 - MPMX19_04939 0.23 +0.1
402,257 - MPMX19_04939 0.23 -0.5
402,257 - MPMX19_04939 0.23 -0.8
402,300 - MPMX19_04939 0.26 -1.5
402,304 + MPMX19_04939 0.27 -0.9
402,305 - MPMX19_04939 0.27 -2.1
402,305 - MPMX19_04939 0.27 -0.1
402,305 - MPMX19_04939 0.27 -0.3
402,305 - MPMX19_04939 0.27 -0.2
402,305 - MPMX19_04939 0.27 -0.0
402,335 - MPMX19_04939 0.29 +0.4
402,335 - MPMX19_04939 0.29 +0.1
402,335 - MPMX19_04939 0.29 -0.2
402,418 + MPMX19_04939 0.35 -1.3
402,418 + MPMX19_04939 0.35 -0.7
402,418 + MPMX19_04939 0.35 +1.5
402,418 + MPMX19_04939 0.35 -0.1
402,418 + MPMX19_04939 0.35 -0.5
402,418 + MPMX19_04939 0.35 +0.9
402,419 - MPMX19_04939 0.35 -1.3
402,419 - MPMX19_04939 0.35 +0.6
402,419 - MPMX19_04939 0.35 -2.0
402,419 - MPMX19_04939 0.35 -0.4
402,419 - MPMX19_04939 0.35 -0.0
402,419 - MPMX19_04939 0.35 -0.1
402,519 + MPMX19_04939 0.42 -1.5
402,519 + MPMX19_04939 0.42 -1.3
402,519 + MPMX19_04939 0.42 -0.6
402,519 + MPMX19_04939 0.42 +1.5
402,519 + MPMX19_04939 0.42 -0.4
402,519 + MPMX19_04939 0.42 +0.3
402,519 + MPMX19_04939 0.42 -1.4
402,519 + MPMX19_04939 0.42 -1.9
402,519 + MPMX19_04939 0.42 -1.2
402,519 + MPMX19_04939 0.42 +0.1
402,519 + MPMX19_04939 0.42 -1.3
402,519 + MPMX19_04939 0.42 +0.6
402,519 + MPMX19_04939 0.42 -0.9
402,520 - MPMX19_04939 0.42 +0.1
402,520 - MPMX19_04939 0.42 +0.1
402,520 - MPMX19_04939 0.42 -0.8
402,520 - MPMX19_04939 0.42 -2.2
402,520 - MPMX19_04939 0.42 -1.0
402,520 - MPMX19_04939 0.42 -0.4
402,520 - MPMX19_04939 0.42 -0.7
402,520 - MPMX19_04939 0.42 -0.5
402,520 - MPMX19_04939 0.42 -0.9
402,520 - MPMX19_04939 0.42 -0.5
402,520 - MPMX19_04939 0.42 -1.2
402,520 - MPMX19_04939 0.42 -1.1
402,520 - MPMX19_04939 0.42 -1.9
402,523 + MPMX19_04939 0.43 +0.5
402,523 + MPMX19_04939 0.43 -0.8
402,523 + MPMX19_04939 0.43 -2.5
402,523 + MPMX19_04939 0.43 -0.7
402,523 + MPMX19_04939 0.43 -1.2
402,523 + MPMX19_04939 0.43 -1.7
402,523 + MPMX19_04939 0.43 -2.1
402,523 + MPMX19_04939 0.43 -0.9
402,524 - MPMX19_04939 0.43 -2.4
402,524 - MPMX19_04939 0.43 +2.2
402,524 - MPMX19_04939 0.43 -0.7
402,524 - MPMX19_04939 0.43 -1.0
402,524 - MPMX19_04939 0.43 -0.1
402,524 - MPMX19_04939 0.43 -2.4
402,524 - MPMX19_04939 0.43 -0.6
402,524 - MPMX19_04939 0.43 -0.4
402,524 - MPMX19_04939 0.43 -0.5
402,524 - MPMX19_04939 0.43 +0.3
402,679 + MPMX19_04939 0.54 -1.4

Or see this region's nucleotide sequence