Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04918

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04917 and MPMX19_04918 are separated by 51 nucleotidesMPMX19_04918 and MPMX19_04919 are separated by 178 nucleotides MPMX19_04917: MPMX19_04917 - Alcohol dehydrogenase, at 372,934 to 373,974 _04917 MPMX19_04918: MPMX19_04918 - Acetyl-CoA:oxalate CoA-transferase, at 374,026 to 375,228 _04918 MPMX19_04919: MPMX19_04919 - 5-aminovalerate aminotransferase DavT, at 375,407 to 376,696 _04919 Position (kb) 374 375 376Strain fitness (log2 ratio) -2 -1 0 1at 373.294 kb on + strand, within MPMX19_04917at 373.294 kb on + strand, within MPMX19_04917at 373.294 kb on + strand, within MPMX19_04917at 373.294 kb on + strand, within MPMX19_04917at 373.294 kb on + strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.825 kb on + strand, within MPMX19_04917at 373.825 kb on + strand, within MPMX19_04917at 373.825 kb on + strand, within MPMX19_04917at 373.826 kb on - strand, within MPMX19_04917at 373.826 kb on - strand, within MPMX19_04917at 374.156 kb on + strand, within MPMX19_04918at 374.156 kb on + strand, within MPMX19_04918at 374.157 kb on - strand, within MPMX19_04918at 374.399 kb on + strand, within MPMX19_04918at 374.399 kb on + strand, within MPMX19_04918at 374.400 kb on - strand, within MPMX19_04918at 374.400 kb on - strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.487 kb on - strand, within MPMX19_04918at 374.487 kb on - strand, within MPMX19_04918at 374.487 kb on - strand, within MPMX19_04918at 374.487 kb on - strand, within MPMX19_04918at 374.487 kb on - strand, within MPMX19_04918at 374.487 kb on - strand, within MPMX19_04918at 374.514 kb on - strand, within MPMX19_04918at 374.514 kb on - strand, within MPMX19_04918at 374.514 kb on - strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.527 kb on - strand, within MPMX19_04918at 374.527 kb on - strand, within MPMX19_04918at 374.527 kb on - strand, within MPMX19_04918at 374.527 kb on - strand, within MPMX19_04918at 374.527 kb on - strand, within MPMX19_04918at 374.527 kb on - strand, within MPMX19_04918at 374.693 kb on + strand, within MPMX19_04918at 374.693 kb on + strand, within MPMX19_04918at 374.693 kb on + strand, within MPMX19_04918at 374.694 kb on - strand, within MPMX19_04918at 374.694 kb on - strand, within MPMX19_04918at 374.694 kb on - strand, within MPMX19_04918at 374.814 kb on - strand, within MPMX19_04918at 374.867 kb on + strand, within MPMX19_04918at 374.868 kb on - strand, within MPMX19_04918at 374.868 kb on - strand, within MPMX19_04918at 374.868 kb on - strand, within MPMX19_04918at 374.903 kb on + strand, within MPMX19_04918at 374.903 kb on + strand, within MPMX19_04918at 374.904 kb on - strand, within MPMX19_04918at 374.904 kb on - strand, within MPMX19_04918at 374.904 kb on - strand, within MPMX19_04918at 374.904 kb on - strand, within MPMX19_04918at 374.904 kb on - strand, within MPMX19_04918at 374.915 kb on + strand, within MPMX19_04918at 374.915 kb on + strand, within MPMX19_04918at 374.915 kb on + strand, within MPMX19_04918at 374.915 kb on + strand, within MPMX19_04918at 374.916 kb on - strand, within MPMX19_04918at 374.916 kb on - strand, within MPMX19_04918at 374.916 kb on - strand, within MPMX19_04918at 374.916 kb on - strand, within MPMX19_04918at 374.916 kb on - strand, within MPMX19_04918at 374.916 kb on - strand, within MPMX19_04918at 374.916 kb on - strand, within MPMX19_04918at 375.053 kb on + strand, within MPMX19_04918at 375.053 kb on + strand, within MPMX19_04918at 375.053 kb on + strand, within MPMX19_04918at 375.054 kb on - strand, within MPMX19_04918at 375.054 kb on - strand, within MPMX19_04918at 375.054 kb on - strand, within MPMX19_04918at 375.054 kb on - strand, within MPMX19_04918at 375.054 kb on - strand, within MPMX19_04918at 375.054 kb on - strand, within MPMX19_04918at 375.054 kb on - strand, within MPMX19_04918at 375.405 kb on + strandat 375.405 kb on + strandat 375.405 kb on + strandat 375.405 kb on + strandat 375.405 kb on + strandat 375.405 kb on + strandat 375.405 kb on + strandat 375.405 kb on + strandat 375.405 kb on + strandat 375.405 kb on + strandat 375.408 kb on + strandat 375.409 kb on - strandat 375.409 kb on - strandat 375.409 kb on - strandat 375.513 kb on + strandat 375.513 kb on + strandat 375.513 kb on + strandat 375.513 kb on + strandat 375.513 kb on + strandat 375.513 kb on + strandat 375.513 kb on + strandat 375.513 kb on + strandat 375.513 kb on + strandat 375.513 kb on + strandat 375.513 kb on + strandat 375.514 kb on - strandat 375.514 kb on - strandat 375.514 kb on - strandat 375.514 kb on - strandat 375.514 kb on - strandat 375.514 kb on - strandat 375.514 kb on - strandat 375.514 kb on - strandat 375.514 kb on - strandat 375.514 kb on - strandat 375.804 kb on + strand, within MPMX19_04919at 375.804 kb on + strand, within MPMX19_04919at 375.804 kb on + strand, within MPMX19_04919at 375.804 kb on + strand, within MPMX19_04919at 375.804 kb on + strand, within MPMX19_04919at 375.804 kb on + strand, within MPMX19_04919at 375.804 kb on + strand, within MPMX19_04919at 375.804 kb on + strand, within MPMX19_04919at 375.804 kb on + strand, within MPMX19_04919at 375.804 kb on + strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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373,294 + MPMX19_04917 0.35 +0.6
373,294 + MPMX19_04917 0.35 -0.2
373,294 + MPMX19_04917 0.35 -2.2
373,294 + MPMX19_04917 0.35 +0.6
373,294 + MPMX19_04917 0.35 -0.5
373,295 - MPMX19_04917 0.35 -0.9
373,295 - MPMX19_04917 0.35 -0.7
373,295 - MPMX19_04917 0.35 -0.9
373,295 - MPMX19_04917 0.35 -0.1
373,295 - MPMX19_04917 0.35 +0.6
373,295 - MPMX19_04917 0.35 -1.1
373,295 - MPMX19_04917 0.35 -1.9
373,295 - MPMX19_04917 0.35 +0.4
373,295 - MPMX19_04917 0.35 +0.9
373,295 - MPMX19_04917 0.35 -0.2
373,295 - MPMX19_04917 0.35 +0.4
373,295 - MPMX19_04917 0.35 +0.1
373,825 + MPMX19_04917 0.86 +0.3
373,825 + MPMX19_04917 0.86 -1.5
373,825 + MPMX19_04917 0.86 -1.6
373,826 - MPMX19_04917 0.86 -0.2
373,826 - MPMX19_04917 0.86 -1.3
374,156 + MPMX19_04918 0.11 +0.9
374,156 + MPMX19_04918 0.11 -0.4
374,157 - MPMX19_04918 0.11 +0.5
374,399 + MPMX19_04918 0.31 -0.1
374,399 + MPMX19_04918 0.31 -1.2
374,400 - MPMX19_04918 0.31 -1.8
374,400 - MPMX19_04918 0.31 -1.5
374,486 + MPMX19_04918 0.38 -1.2
374,486 + MPMX19_04918 0.38 +0.1
374,486 + MPMX19_04918 0.38 -0.5
374,486 + MPMX19_04918 0.38 -1.8
374,486 + MPMX19_04918 0.38 -0.8
374,486 + MPMX19_04918 0.38 +0.5
374,486 + MPMX19_04918 0.38 -0.9
374,486 + MPMX19_04918 0.38 -0.1
374,486 + MPMX19_04918 0.38 +0.0
374,486 + MPMX19_04918 0.38 -2.0
374,487 - MPMX19_04918 0.38 -0.8
374,487 - MPMX19_04918 0.38 -1.5
374,487 - MPMX19_04918 0.38 -0.2
374,487 - MPMX19_04918 0.38 -0.4
374,487 - MPMX19_04918 0.38 -0.7
374,487 - MPMX19_04918 0.38 -1.7
374,514 - MPMX19_04918 0.41 -1.9
374,514 - MPMX19_04918 0.41 -0.4
374,514 - MPMX19_04918 0.41 -1.0
374,526 + MPMX19_04918 0.42 +0.5
374,526 + MPMX19_04918 0.42 -0.5
374,526 + MPMX19_04918 0.42 -0.0
374,526 + MPMX19_04918 0.42 -0.3
374,526 + MPMX19_04918 0.42 -0.0
374,526 + MPMX19_04918 0.42 -0.4
374,526 + MPMX19_04918 0.42 -0.7
374,526 + MPMX19_04918 0.42 -1.1
374,527 - MPMX19_04918 0.42 +0.8
374,527 - MPMX19_04918 0.42 -0.1
374,527 - MPMX19_04918 0.42 -1.7
374,527 - MPMX19_04918 0.42 -0.1
374,527 - MPMX19_04918 0.42 +0.4
374,527 - MPMX19_04918 0.42 +0.6
374,693 + MPMX19_04918 0.55 -0.7
374,693 + MPMX19_04918 0.55 -1.5
374,693 + MPMX19_04918 0.55 -0.7
374,694 - MPMX19_04918 0.56 -1.5
374,694 - MPMX19_04918 0.56 -0.5
374,694 - MPMX19_04918 0.56 -0.4
374,814 - MPMX19_04918 0.66 -0.4
374,867 + MPMX19_04918 0.70 -0.5
374,868 - MPMX19_04918 0.70 -0.2
374,868 - MPMX19_04918 0.70 -0.2
374,868 - MPMX19_04918 0.70 -1.4
374,903 + MPMX19_04918 0.73 +0.4
374,903 + MPMX19_04918 0.73 -1.2
374,904 - MPMX19_04918 0.73 -0.1
374,904 - MPMX19_04918 0.73 -0.9
374,904 - MPMX19_04918 0.73 -0.3
374,904 - MPMX19_04918 0.73 +0.3
374,904 - MPMX19_04918 0.73 -1.1
374,915 + MPMX19_04918 0.74 +0.2
374,915 + MPMX19_04918 0.74 -0.9
374,915 + MPMX19_04918 0.74 -1.2
374,915 + MPMX19_04918 0.74 -1.2
374,916 - MPMX19_04918 0.74 -0.2
374,916 - MPMX19_04918 0.74 +0.8
374,916 - MPMX19_04918 0.74 +0.5
374,916 - MPMX19_04918 0.74 -0.8
374,916 - MPMX19_04918 0.74 +0.7
374,916 - MPMX19_04918 0.74 +0.0
374,916 - MPMX19_04918 0.74 -0.4
375,053 + MPMX19_04918 0.85 -1.5
375,053 + MPMX19_04918 0.85 -0.8
375,053 + MPMX19_04918 0.85 -1.3
375,054 - MPMX19_04918 0.85 +0.1
375,054 - MPMX19_04918 0.85 -0.7
375,054 - MPMX19_04918 0.85 -1.0
375,054 - MPMX19_04918 0.85 +0.4
375,054 - MPMX19_04918 0.85 -0.1
375,054 - MPMX19_04918 0.85 +0.1
375,054 - MPMX19_04918 0.85 -0.3
375,405 + -0.4
375,405 + -1.0
375,405 + +0.6
375,405 + -0.9
375,405 + -1.3
375,405 + +0.2
375,405 + +0.6
375,405 + -0.1
375,405 + -0.4
375,405 + -0.9
375,408 + -0.2
375,409 - -0.0
375,409 - -2.3
375,409 - -0.1
375,513 + -0.2
375,513 + -1.1
375,513 + +0.3
375,513 + +0.6
375,513 + +0.8
375,513 + +0.8
375,513 + +0.6
375,513 + -1.2
375,513 + -0.4
375,513 + -1.0
375,513 + +0.9
375,514 - -0.1
375,514 - -0.9
375,514 - -1.0
375,514 - +0.1
375,514 - +0.1
375,514 - -0.4
375,514 - -1.4
375,514 - -0.6
375,514 - -0.6
375,514 - +0.4
375,804 + MPMX19_04919 0.31 -0.7
375,804 + MPMX19_04919 0.31 +0.4
375,804 + MPMX19_04919 0.31 -1.4
375,804 + MPMX19_04919 0.31 -0.2
375,804 + MPMX19_04919 0.31 +1.3
375,804 + MPMX19_04919 0.31 +0.2
375,804 + MPMX19_04919 0.31 +0.6
375,804 + MPMX19_04919 0.31 -1.0
375,804 + MPMX19_04919 0.31 -0.0
375,804 + MPMX19_04919 0.31 -2.2
375,805 - MPMX19_04919 0.31 -1.8
375,805 - MPMX19_04919 0.31 -1.3
375,805 - MPMX19_04919 0.31 -1.5
375,805 - MPMX19_04919 0.31 -1.6
375,805 - MPMX19_04919 0.31 -0.0
375,805 - MPMX19_04919 0.31 +0.6
375,805 - MPMX19_04919 0.31 -1.9
375,805 - MPMX19_04919 0.31 -0.7
375,805 - MPMX19_04919 0.31 -1.1
375,805 - MPMX19_04919 0.31 -0.7
375,805 - MPMX19_04919 0.31 -0.4
375,805 - MPMX19_04919 0.31 -0.2
375,805 - MPMX19_04919 0.31 -0.3

Or see this region's nucleotide sequence