Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04890 and MPMX19_04891 are separated by 66 nucleotides MPMX19_04891 and MPMX19_04892 are separated by 209 nucleotides MPMX19_04892 and MPMX19_04893 are separated by 37 nucleotides MPMX19_04893 and MPMX19_04894 are separated by 33 nucleotides
MPMX19_04890: MPMX19_04890 - hypothetical protein, at 340,116 to 340,778
_04890
MPMX19_04891: MPMX19_04891 - hypothetical protein, at 340,845 to 341,318
_04891
MPMX19_04892: MPMX19_04892 - Adenine DNA glycosylase, at 341,528 to 342,586
_04892
MPMX19_04893: MPMX19_04893 - hypothetical protein, at 342,624 to 343,346
_04893
MPMX19_04894: MPMX19_04894 - FAD-dependent catabolic D-arginine dehydrogenase DauA, at 343,380 to 344,519
_04894
Position (kb) 341
342
343 Strain fitness (log2 ratio) -2
-1
0
1
2 at 340.583 kb on - strand, within MPMX19_04890 at 340.750 kb on + strand at 340.751 kb on - strand at 340.793 kb on + strand at 340.794 kb on - strand at 340.794 kb on - strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.810 kb on + strand at 340.810 kb on + strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.823 kb on - strand at 340.823 kb on - strand at 340.823 kb on - strand at 340.823 kb on - strand at 340.823 kb on - strand at 341.389 kb on + strand at 341.389 kb on + strand at 341.390 kb on - strand at 341.514 kb on + strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.573 kb on + strand at 341.634 kb on - strand, within MPMX19_04892 at 341.693 kb on + strand, within MPMX19_04892 at 341.693 kb on + strand, within MPMX19_04892 at 341.693 kb on + strand, within MPMX19_04892 at 341.693 kb on + strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.787 kb on - strand, within MPMX19_04892 at 341.787 kb on - strand, within MPMX19_04892 at 341.789 kb on + strand, within MPMX19_04892 at 341.789 kb on + strand, within MPMX19_04892 at 341.789 kb on + strand, within MPMX19_04892 at 341.789 kb on + strand, within MPMX19_04892 at 341.789 kb on + strand, within MPMX19_04892 at 341.790 kb on - strand, within MPMX19_04892 at 341.790 kb on - strand, within MPMX19_04892 at 341.790 kb on - strand, within MPMX19_04892 at 341.900 kb on + strand, within MPMX19_04892 at 341.900 kb on + strand, within MPMX19_04892 at 341.900 kb on + strand, within MPMX19_04892 at 341.900 kb on + strand, within MPMX19_04892 at 341.900 kb on + strand, within MPMX19_04892 at 341.901 kb on - strand, within MPMX19_04892 at 341.901 kb on - strand, within MPMX19_04892 at 341.901 kb on - strand, within MPMX19_04892 at 341.901 kb on - strand, within MPMX19_04892 at 342.027 kb on + strand, within MPMX19_04892 at 342.027 kb on + strand, within MPMX19_04892 at 342.027 kb on + strand, within MPMX19_04892 at 342.027 kb on + strand, within MPMX19_04892 at 342.027 kb on + strand, within MPMX19_04892 at 342.028 kb on - strand, within MPMX19_04892 at 342.028 kb on - strand, within MPMX19_04892 at 342.028 kb on - strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.075 kb on - strand, within MPMX19_04892 at 342.075 kb on - strand, within MPMX19_04892 at 342.075 kb on - strand, within MPMX19_04892 at 342.075 kb on - strand, within MPMX19_04892 at 342.155 kb on + strand, within MPMX19_04892 at 342.155 kb on + strand, within MPMX19_04892 at 342.155 kb on + strand, within MPMX19_04892 at 342.156 kb on - strand, within MPMX19_04892 at 342.156 kb on - strand, within MPMX19_04892 at 342.242 kb on + strand, within MPMX19_04892 at 342.242 kb on + strand, within MPMX19_04892 at 342.243 kb on - strand, within MPMX19_04892 at 342.424 kb on + strand, within MPMX19_04892 at 342.424 kb on + strand, within MPMX19_04892 at 342.424 kb on + strand, within MPMX19_04892 at 342.424 kb on + strand, within MPMX19_04892 at 342.424 kb on + strand, within MPMX19_04892 at 342.424 kb on + strand, within MPMX19_04892 at 342.424 kb on + strand, within MPMX19_04892 at 342.424 kb on + strand, within MPMX19_04892 at 342.424 kb on + strand, within MPMX19_04892 at 342.424 kb on + strand, within MPMX19_04892 at 342.425 kb on - strand, within MPMX19_04892 at 342.425 kb on - strand, within MPMX19_04892 at 342.425 kb on - strand, within MPMX19_04892 at 342.425 kb on - strand, within MPMX19_04892 at 342.425 kb on - strand, within MPMX19_04892 at 342.425 kb on - strand, within MPMX19_04892 at 342.425 kb on - strand, within MPMX19_04892 at 342.599 kb on - strand at 342.609 kb on + strand at 342.609 kb on + strand at 342.609 kb on + strand at 342.609 kb on + strand at 342.609 kb on + strand at 342.609 kb on + strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.873 kb on + strand, within MPMX19_04893 at 342.873 kb on + strand, within MPMX19_04893 at 342.873 kb on + strand, within MPMX19_04893 at 342.873 kb on + strand, within MPMX19_04893 at 342.874 kb on - strand, within MPMX19_04893 at 343.194 kb on + strand, within MPMX19_04893 at 343.194 kb on + strand, within MPMX19_04893 at 343.194 kb on + strand, within MPMX19_04893 at 343.194 kb on + strand, within MPMX19_04893 at 343.194 kb on + strand, within MPMX19_04893 at 343.195 kb on - strand, within MPMX19_04893 at 343.195 kb on - strand, within MPMX19_04893 at 343.195 kb on - strand, within MPMX19_04893 at 343.195 kb on - strand, within MPMX19_04893 at 343.195 kb on - strand, within MPMX19_04893 at 343.195 kb on - strand, within MPMX19_04893 at 343.344 kb on + strand at 343.344 kb on + strand at 343.345 kb on - strand at 343.345 kb on - strand at 343.437 kb on + strand at 343.437 kb on + strand at 343.438 kb on - strand at 343.438 kb on - strand at 343.438 kb on - strand at 343.495 kb on - strand, within MPMX19_04894 at 343.524 kb on + strand, within MPMX19_04894 at 343.524 kb on + strand, within MPMX19_04894 at 343.525 kb on - strand, within MPMX19_04894 at 343.525 kb on - strand, within MPMX19_04894 at 343.525 kb on - strand, within MPMX19_04894 at 343.525 kb on - strand, within MPMX19_04894 at 343.525 kb on - strand, within MPMX19_04894 at 343.525 kb on - strand, within MPMX19_04894 at 343.536 kb on + strand, within MPMX19_04894 at 343.536 kb on + strand, within MPMX19_04894 at 343.536 kb on + strand, within MPMX19_04894 at 343.536 kb on + strand, within MPMX19_04894 at 343.536 kb on + strand, within MPMX19_04894 at 343.537 kb on - strand, within MPMX19_04894 at 343.537 kb on - strand, within MPMX19_04894 at 343.584 kb on + strand, within MPMX19_04894 at 343.584 kb on + strand, within MPMX19_04894 at 343.584 kb on + strand, within MPMX19_04894 at 343.584 kb on + strand, within MPMX19_04894 at 343.584 kb on + strand, within MPMX19_04894 at 343.584 kb on + strand, within MPMX19_04894 at 343.584 kb on + strand, within MPMX19_04894 at 343.584 kb on + strand, within MPMX19_04894 at 343.585 kb on - strand, within MPMX19_04894 at 343.585 kb on - strand, within MPMX19_04894 at 343.585 kb on - strand, within MPMX19_04894 at 343.585 kb on - strand, within MPMX19_04894 at 343.585 kb on - strand, within MPMX19_04894 at 343.585 kb on - strand, within MPMX19_04894 at 343.585 kb on - strand, within MPMX19_04894
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 340,583 - MPMX19_04890 0.70 -1.4 340,750 + -2.2 340,751 - -1.4 340,793 + +0.9 340,794 - -0.7 340,794 - +0.1 340,808 + -1.2 340,808 + -1.1 340,808 + +0.5 340,808 + +0.6 340,808 + -1.2 340,808 + -0.7 340,808 + +0.2 340,808 + -0.7 340,808 + -1.3 340,808 + +0.3 340,808 + +0.1 340,808 + +0.8 340,809 - +0.6 340,809 - -1.4 340,809 - +0.4 340,809 - +0.5 340,809 - -1.2 340,809 - -0.3 340,809 - -1.2 340,809 - -1.1 340,809 - -0.3 340,809 - -1.2 340,809 - -0.7 340,809 - -0.2 340,809 - +0.4 340,809 - -0.7 340,810 + -0.5 340,810 + +0.3 340,811 - +0.8 340,811 - -0.6 340,811 - -0.0 340,811 - -1.2 340,811 - -0.5 340,811 - +0.8 340,811 - -0.2 340,811 - +1.9 340,811 - +0.1 340,811 - +0.9 340,822 + +0.1 340,822 + -1.7 340,822 + -2.3 340,822 + -0.3 340,822 + +1.6 340,823 - -0.7 340,823 - -1.1 340,823 - -1.5 340,823 - +0.1 340,823 - -0.7 341,389 + -2.1 341,389 + +0.9 341,390 - +0.0 341,514 + -1.2 341,515 - +0.7 341,515 - +0.1 341,515 - -1.0 341,515 - -0.4 341,515 - +0.0 341,515 - -0.8 341,515 - -0.3 341,515 - -1.2 341,515 - -0.1 341,515 - +0.3 341,573 + -0.8 341,634 - MPMX19_04892 0.10 -1.5 341,693 + MPMX19_04892 0.16 +0.3 341,693 + MPMX19_04892 0.16 +0.4 341,693 + MPMX19_04892 0.16 -1.1 341,693 + MPMX19_04892 0.16 -0.2 341,694 - MPMX19_04892 0.16 -0.6 341,694 - MPMX19_04892 0.16 -1.2 341,694 - MPMX19_04892 0.16 +0.8 341,694 - MPMX19_04892 0.16 +0.0 341,694 - MPMX19_04892 0.16 -0.1 341,694 - MPMX19_04892 0.16 +0.2 341,694 - MPMX19_04892 0.16 +0.4 341,787 - MPMX19_04892 0.24 +0.5 341,787 - MPMX19_04892 0.24 +0.8 341,789 + MPMX19_04892 0.25 +0.3 341,789 + MPMX19_04892 0.25 +0.8 341,789 + MPMX19_04892 0.25 +1.1 341,789 + MPMX19_04892 0.25 -0.8 341,789 + MPMX19_04892 0.25 +0.3 341,790 - MPMX19_04892 0.25 +0.6 341,790 - MPMX19_04892 0.25 -0.1 341,790 - MPMX19_04892 0.25 -1.0 341,900 + MPMX19_04892 0.35 -0.1 341,900 + MPMX19_04892 0.35 -0.2 341,900 + MPMX19_04892 0.35 -0.2 341,900 + MPMX19_04892 0.35 -1.1 341,900 + MPMX19_04892 0.35 -0.6 341,901 - MPMX19_04892 0.35 +0.0 341,901 - MPMX19_04892 0.35 -0.0 341,901 - MPMX19_04892 0.35 -0.8 341,901 - MPMX19_04892 0.35 +0.0 342,027 + MPMX19_04892 0.47 -0.6 342,027 + MPMX19_04892 0.47 -1.5 342,027 + MPMX19_04892 0.47 -0.3 342,027 + MPMX19_04892 0.47 -0.4 342,027 + MPMX19_04892 0.47 +0.1 342,028 - MPMX19_04892 0.47 +0.1 342,028 - MPMX19_04892 0.47 -2.2 342,028 - MPMX19_04892 0.47 -0.8 342,074 + MPMX19_04892 0.52 -0.7 342,074 + MPMX19_04892 0.52 +0.7 342,074 + MPMX19_04892 0.52 -0.1 342,074 + MPMX19_04892 0.52 +1.2 342,074 + MPMX19_04892 0.52 +1.6 342,074 + MPMX19_04892 0.52 -0.2 342,074 + MPMX19_04892 0.52 +0.6 342,074 + MPMX19_04892 0.52 -0.6 342,075 - MPMX19_04892 0.52 -1.0 342,075 - MPMX19_04892 0.52 +0.9 342,075 - MPMX19_04892 0.52 -1.4 342,075 - MPMX19_04892 0.52 +0.0 342,155 + MPMX19_04892 0.59 +0.9 342,155 + MPMX19_04892 0.59 -0.8 342,155 + MPMX19_04892 0.59 -0.2 342,156 - MPMX19_04892 0.59 -1.0 342,156 - MPMX19_04892 0.59 -1.1 342,242 + MPMX19_04892 0.67 -1.0 342,242 + MPMX19_04892 0.67 +0.8 342,243 - MPMX19_04892 0.68 -1.2 342,424 + MPMX19_04892 0.85 -0.3 342,424 + MPMX19_04892 0.85 -0.2 342,424 + MPMX19_04892 0.85 +0.5 342,424 + MPMX19_04892 0.85 +0.1 342,424 + MPMX19_04892 0.85 +0.5 342,424 + MPMX19_04892 0.85 -1.2 342,424 + MPMX19_04892 0.85 -0.3 342,424 + MPMX19_04892 0.85 -1.2 342,424 + MPMX19_04892 0.85 -0.4 342,424 + MPMX19_04892 0.85 -2.0 342,425 - MPMX19_04892 0.85 +0.2 342,425 - MPMX19_04892 0.85 -0.7 342,425 - MPMX19_04892 0.85 -0.5 342,425 - MPMX19_04892 0.85 +0.7 342,425 - MPMX19_04892 0.85 -1.3 342,425 - MPMX19_04892 0.85 -1.9 342,425 - MPMX19_04892 0.85 -0.3 342,599 - -1.7 342,609 + +0.3 342,609 + -0.9 342,609 + -1.4 342,609 + -1.2 342,609 + +0.7 342,609 + -2.3 342,610 - -1.7 342,610 - -1.0 342,610 - +1.2 342,610 - +0.1 342,610 - -0.9 342,610 - +0.6 342,610 - -0.7 342,610 - -1.3 342,610 - -1.5 342,610 - -0.9 342,610 - +2.2 342,610 - +0.2 342,610 - +0.1 342,610 - +0.6 342,610 - +1.1 342,610 - +0.5 342,610 - +0.5 342,610 - -0.2 342,610 - -0.4 342,610 - -0.0 342,873 + MPMX19_04893 0.34 +0.6 342,873 + MPMX19_04893 0.34 -0.5 342,873 + MPMX19_04893 0.34 -0.7 342,873 + MPMX19_04893 0.34 +0.5 342,874 - MPMX19_04893 0.35 -0.4 343,194 + MPMX19_04893 0.79 -0.2 343,194 + MPMX19_04893 0.79 +0.5 343,194 + MPMX19_04893 0.79 -1.5 343,194 + MPMX19_04893 0.79 -0.7 343,194 + MPMX19_04893 0.79 -1.5 343,195 - MPMX19_04893 0.79 -1.2 343,195 - MPMX19_04893 0.79 -0.2 343,195 - MPMX19_04893 0.79 -0.8 343,195 - MPMX19_04893 0.79 +0.3 343,195 - MPMX19_04893 0.79 -0.3 343,195 - MPMX19_04893 0.79 -0.4 343,344 + +0.1 343,344 + -1.2 343,345 - +0.3 343,345 - -0.9 343,437 + -0.4 343,437 + -0.4 343,438 - -0.3 343,438 - +0.6 343,438 - +0.9 343,495 - MPMX19_04894 0.10 -0.1 343,524 + MPMX19_04894 0.13 +0.0 343,524 + MPMX19_04894 0.13 -1.4 343,525 - MPMX19_04894 0.13 -1.0 343,525 - MPMX19_04894 0.13 -0.5 343,525 - MPMX19_04894 0.13 -0.8 343,525 - MPMX19_04894 0.13 -1.2 343,525 - MPMX19_04894 0.13 +0.5 343,525 - MPMX19_04894 0.13 +0.0 343,536 + MPMX19_04894 0.14 -0.2 343,536 + MPMX19_04894 0.14 -0.7 343,536 + MPMX19_04894 0.14 -0.7 343,536 + MPMX19_04894 0.14 -1.0 343,536 + MPMX19_04894 0.14 +0.0 343,537 - MPMX19_04894 0.14 +0.4 343,537 - MPMX19_04894 0.14 -1.5 343,584 + MPMX19_04894 0.18 -1.1 343,584 + MPMX19_04894 0.18 +0.4 343,584 + MPMX19_04894 0.18 -0.6 343,584 + MPMX19_04894 0.18 +0.3 343,584 + MPMX19_04894 0.18 -1.0 343,584 + MPMX19_04894 0.18 -0.8 343,584 + MPMX19_04894 0.18 -1.4 343,584 + MPMX19_04894 0.18 +0.5 343,585 - MPMX19_04894 0.18 -1.2 343,585 - MPMX19_04894 0.18 +0.6 343,585 - MPMX19_04894 0.18 -1.0 343,585 - MPMX19_04894 0.18 -0.2 343,585 - MPMX19_04894 0.18 +0.6 343,585 - MPMX19_04894 0.18 +0.8 343,585 - MPMX19_04894 0.18 -0.5
Or see this region's nucleotide sequence