Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04869 and MPMX19_04870 are separated by 132 nucleotides MPMX19_04870 and MPMX19_04871 are separated by 118 nucleotides
MPMX19_04869: MPMX19_04869 - DNA polymerase I, at 310,475 to 313,399
_04869
MPMX19_04870: MPMX19_04870 - Transcriptional regulatory protein OmpR, at 313,532 to 314,317
_04870
MPMX19_04871: MPMX19_04871 - hypothetical protein, at 314,436 to 315,311
_04871
Position (kb) 313
314
315 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 313.430 kb on + strand at 313.430 kb on + strand at 313.430 kb on + strand at 313.431 kb on - strand at 313.584 kb on + strand at 313.584 kb on + strand at 313.584 kb on + strand at 313.585 kb on - strand at 313.683 kb on + strand, within MPMX19_04870 at 313.683 kb on + strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.822 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.259 kb on + strand at 314.259 kb on + strand at 314.259 kb on + strand at 314.260 kb on - strand at 314.260 kb on - strand at 314.260 kb on - strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.359 kb on - strand at 314.386 kb on + strand at 314.402 kb on + strand at 314.403 kb on - strand at 314.403 kb on - strand at 314.437 kb on + strand at 314.437 kb on + strand at 314.437 kb on + strand at 314.437 kb on + strand at 314.437 kb on + strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.452 kb on + strand at 314.452 kb on + strand at 314.453 kb on - strand at 314.477 kb on - strand at 314.477 kb on - strand at 314.477 kb on - strand at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.588 kb on - strand, within MPMX19_04871 at 314.588 kb on - strand, within MPMX19_04871 at 314.588 kb on - strand, within MPMX19_04871 at 314.588 kb on - strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.687 kb on - strand, within MPMX19_04871 at 314.687 kb on - strand, within MPMX19_04871 at 314.923 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 315.046 kb on + strand, within MPMX19_04871
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 313,430 + -0.6 313,430 + -1.1 313,430 + -1.2 313,431 - -0.9 313,584 + -0.4 313,584 + -0.2 313,584 + -0.5 313,585 - -0.5 313,683 + MPMX19_04870 0.19 -0.7 313,683 + MPMX19_04870 0.19 +0.1 313,684 - MPMX19_04870 0.19 -0.9 313,684 - MPMX19_04870 0.19 +0.4 313,684 - MPMX19_04870 0.19 -0.3 313,684 - MPMX19_04870 0.19 +0.4 313,776 + MPMX19_04870 0.31 -2.1 313,776 + MPMX19_04870 0.31 +0.6 313,776 + MPMX19_04870 0.31 -0.9 313,776 + MPMX19_04870 0.31 +1.3 313,776 + MPMX19_04870 0.31 -1.8 313,776 + MPMX19_04870 0.31 -1.1 313,776 + MPMX19_04870 0.31 +0.1 313,776 + MPMX19_04870 0.31 -0.4 313,776 + MPMX19_04870 0.31 +0.6 313,777 - MPMX19_04870 0.31 +1.2 313,777 - MPMX19_04870 0.31 +0.6 313,777 - MPMX19_04870 0.31 -0.6 313,777 - MPMX19_04870 0.31 -1.2 313,777 - MPMX19_04870 0.31 -1.7 313,777 - MPMX19_04870 0.31 +0.6 313,777 - MPMX19_04870 0.31 -0.5 313,777 - MPMX19_04870 0.31 -1.5 313,822 + MPMX19_04870 0.37 -1.2 314,025 + MPMX19_04870 0.63 -0.7 314,025 + MPMX19_04870 0.63 -1.2 314,025 + MPMX19_04870 0.63 +0.1 314,025 + MPMX19_04870 0.63 +0.2 314,025 + MPMX19_04870 0.63 -0.2 314,025 + MPMX19_04870 0.63 -1.6 314,025 + MPMX19_04870 0.63 -0.8 314,025 + MPMX19_04870 0.63 +0.5 314,026 - MPMX19_04870 0.63 +1.4 314,026 - MPMX19_04870 0.63 +0.7 314,026 - MPMX19_04870 0.63 +2.0 314,026 - MPMX19_04870 0.63 -0.3 314,026 - MPMX19_04870 0.63 -0.9 314,026 - MPMX19_04870 0.63 +0.9 314,026 - MPMX19_04870 0.63 +0.1 314,026 - MPMX19_04870 0.63 -0.7 314,026 - MPMX19_04870 0.63 +1.0 314,026 - MPMX19_04870 0.63 -0.9 314,026 - MPMX19_04870 0.63 +1.6 314,026 - MPMX19_04870 0.63 -0.3 314,259 + +0.6 314,259 + -1.5 314,259 + -0.6 314,260 - +1.1 314,260 - -0.7 314,260 - -1.9 314,345 + +1.8 314,345 + -0.3 314,345 + -0.4 314,345 + +2.0 314,345 + -1.2 314,346 - -0.8 314,346 - +0.6 314,346 - -1.3 314,346 - -0.5 314,346 - +0.6 314,346 - +1.1 314,353 + +0.1 314,353 + -0.6 314,353 + -0.9 314,353 + -1.2 314,353 + -0.1 314,353 + -2.9 314,353 + -0.8 314,353 + -1.2 314,353 + +0.2 314,354 - -0.7 314,354 - -0.9 314,354 - -0.8 314,354 - +1.1 314,354 - -2.1 314,355 + -0.3 314,355 + -0.5 314,355 + -0.7 314,355 + +1.1 314,355 + -0.6 314,355 + -0.4 314,355 + -0.5 314,355 + -1.5 314,355 + -0.5 314,356 - -0.7 314,356 - -0.5 314,356 - +0.6 314,356 - +0.4 314,356 - -1.1 314,356 - -0.2 314,358 + -0.3 314,358 + -0.5 314,358 + -0.3 314,358 + -0.4 314,358 + +0.4 314,359 - -1.5 314,386 + +0.4 314,402 + -0.4 314,403 - +0.2 314,403 - +0.1 314,437 + -0.9 314,437 + +0.3 314,437 + -0.1 314,437 + +0.3 314,437 + -0.4 314,438 - -0.6 314,438 - -1.0 314,438 - -0.1 314,438 - -1.5 314,438 - -0.3 314,438 - +0.4 314,438 - +0.3 314,452 + -1.1 314,452 + -0.8 314,453 - -0.4 314,477 - -1.7 314,477 - -1.4 314,477 - -0.9 314,587 + MPMX19_04871 0.17 +0.1 314,587 + MPMX19_04871 0.17 -0.4 314,587 + MPMX19_04871 0.17 +0.3 314,587 + MPMX19_04871 0.17 -2.1 314,587 + MPMX19_04871 0.17 -0.5 314,587 + MPMX19_04871 0.17 -1.6 314,587 + MPMX19_04871 0.17 -0.1 314,588 - MPMX19_04871 0.17 -0.2 314,588 - MPMX19_04871 0.17 +0.1 314,588 - MPMX19_04871 0.17 +0.4 314,588 - MPMX19_04871 0.17 -0.7 314,686 + MPMX19_04871 0.29 -0.6 314,686 + MPMX19_04871 0.29 -1.6 314,686 + MPMX19_04871 0.29 -1.3 314,686 + MPMX19_04871 0.29 -0.5 314,686 + MPMX19_04871 0.29 -0.4 314,686 + MPMX19_04871 0.29 -0.4 314,686 + MPMX19_04871 0.29 -2.1 314,687 - MPMX19_04871 0.29 -1.7 314,687 - MPMX19_04871 0.29 -0.5 314,923 + MPMX19_04871 0.56 +0.1 314,932 + MPMX19_04871 0.57 +0.9 314,932 + MPMX19_04871 0.57 -1.4 314,932 + MPMX19_04871 0.57 -0.2 314,932 + MPMX19_04871 0.57 -0.2 314,932 + MPMX19_04871 0.57 +0.1 314,932 + MPMX19_04871 0.57 +0.4 314,932 + MPMX19_04871 0.57 -0.5 314,932 + MPMX19_04871 0.57 -0.4 314,933 - MPMX19_04871 0.57 +1.0 314,933 - MPMX19_04871 0.57 +0.3 314,933 - MPMX19_04871 0.57 -2.0 314,933 - MPMX19_04871 0.57 +0.1 314,933 - MPMX19_04871 0.57 +0.8 314,933 - MPMX19_04871 0.57 +0.8 314,933 - MPMX19_04871 0.57 -0.8 314,933 - MPMX19_04871 0.57 -1.9 314,933 - MPMX19_04871 0.57 -0.7 314,933 - MPMX19_04871 0.57 +1.6 315,046 + MPMX19_04871 0.70 +0.3
Or see this region's nucleotide sequence