Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04826 and MPMX19_04827 overlap by 4 nucleotides MPMX19_04827 and MPMX19_04828 are separated by 11 nucleotides
MPMX19_04826: MPMX19_04826 - hypothetical protein, at 233,555 to 234,616
_04826
MPMX19_04827: MPMX19_04827 - hypothetical protein, at 234,613 to 235,038
_04827
MPMX19_04828: MPMX19_04828 - hypothetical protein, at 235,050 to 236,141
_04828
Position (kb)
234
235
236 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 233.888 kb on + strand, within MPMX19_04826 at 233.888 kb on + strand, within MPMX19_04826 at 233.889 kb on - strand, within MPMX19_04826 at 233.889 kb on - strand, within MPMX19_04826 at 234.146 kb on + strand, within MPMX19_04826 at 234.146 kb on + strand, within MPMX19_04826 at 234.146 kb on + strand, within MPMX19_04826 at 234.146 kb on + strand, within MPMX19_04826 at 234.147 kb on - strand, within MPMX19_04826 at 234.147 kb on - strand, within MPMX19_04826 at 234.147 kb on - strand, within MPMX19_04826 at 234.147 kb on - strand, within MPMX19_04826 at 234.147 kb on - strand, within MPMX19_04826 at 234.147 kb on - strand, within MPMX19_04826 at 234.164 kb on - strand, within MPMX19_04826 at 234.634 kb on + strand at 234.635 kb on - strand at 234.934 kb on + strand, within MPMX19_04827 at 234.934 kb on + strand, within MPMX19_04827 at 234.934 kb on + strand, within MPMX19_04827 at 234.934 kb on + strand, within MPMX19_04827 at 234.934 kb on + strand, within MPMX19_04827 at 234.934 kb on + strand, within MPMX19_04827 at 234.934 kb on + strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 234.935 kb on - strand, within MPMX19_04827 at 235.251 kb on + strand, within MPMX19_04828 at 235.251 kb on + strand, within MPMX19_04828 at 235.251 kb on + strand, within MPMX19_04828 at 235.251 kb on + strand, within MPMX19_04828 at 235.251 kb on + strand, within MPMX19_04828 at 235.251 kb on + strand, within MPMX19_04828 at 235.251 kb on + strand, within MPMX19_04828 at 235.251 kb on + strand, within MPMX19_04828 at 235.252 kb on - strand, within MPMX19_04828 at 235.252 kb on - strand, within MPMX19_04828 at 235.252 kb on - strand, within MPMX19_04828 at 235.252 kb on - strand, within MPMX19_04828 at 235.252 kb on - strand, within MPMX19_04828 at 235.312 kb on - strand, within MPMX19_04828 at 235.312 kb on - strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.335 kb on + strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.336 kb on - strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.521 kb on + strand, within MPMX19_04828 at 235.522 kb on - strand, within MPMX19_04828 at 235.522 kb on - strand, within MPMX19_04828 at 235.522 kb on - strand, within MPMX19_04828 at 235.522 kb on - strand, within MPMX19_04828 at 235.522 kb on - strand, within MPMX19_04828 at 235.522 kb on - strand, within MPMX19_04828 at 235.522 kb on - strand, within MPMX19_04828 at 235.522 kb on - strand, within MPMX19_04828 at 235.522 kb on - strand, within MPMX19_04828 at 235.581 kb on + strand, within MPMX19_04828 at 235.581 kb on + strand, within MPMX19_04828 at 235.582 kb on - strand, within MPMX19_04828 at 235.582 kb on - strand, within MPMX19_04828 at 235.582 kb on - strand, within MPMX19_04828 at 235.614 kb on + strand, within MPMX19_04828 at 235.615 kb on - strand, within MPMX19_04828 at 235.615 kb on - strand, within MPMX19_04828 at 235.615 kb on - strand, within MPMX19_04828 at 235.615 kb on - strand, within MPMX19_04828 at 235.615 kb on - strand, within MPMX19_04828 at 235.647 kb on + strand, within MPMX19_04828 at 235.647 kb on + strand, within MPMX19_04828 at 235.647 kb on + strand, within MPMX19_04828 at 235.648 kb on - strand, within MPMX19_04828 at 235.648 kb on - strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.761 kb on + strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.762 kb on - strand, within MPMX19_04828 at 235.942 kb on - strand, within MPMX19_04828 at 235.965 kb on + strand, within MPMX19_04828 at 235.966 kb on - strand, within MPMX19_04828 at 235.966 kb on - strand, within MPMX19_04828
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 233,888 + MPMX19_04826 0.31 +1.6 233,888 + MPMX19_04826 0.31 -0.7 233,889 - MPMX19_04826 0.31 -0.9 233,889 - MPMX19_04826 0.31 +1.2 234,146 + MPMX19_04826 0.56 -0.7 234,146 + MPMX19_04826 0.56 -0.4 234,146 + MPMX19_04826 0.56 -0.2 234,146 + MPMX19_04826 0.56 -2.1 234,147 - MPMX19_04826 0.56 +0.9 234,147 - MPMX19_04826 0.56 -0.8 234,147 - MPMX19_04826 0.56 +1.2 234,147 - MPMX19_04826 0.56 +1.0 234,147 - MPMX19_04826 0.56 -0.1 234,147 - MPMX19_04826 0.56 +0.8 234,164 - MPMX19_04826 0.57 +0.5 234,634 + +0.0 234,635 - -1.4 234,934 + MPMX19_04827 0.75 -0.7 234,934 + MPMX19_04827 0.75 -0.9 234,934 + MPMX19_04827 0.75 +0.6 234,934 + MPMX19_04827 0.75 -0.8 234,934 + MPMX19_04827 0.75 -1.1 234,934 + MPMX19_04827 0.75 -1.5 234,934 + MPMX19_04827 0.75 +0.1 234,935 - MPMX19_04827 0.76 -1.2 234,935 - MPMX19_04827 0.76 +0.6 234,935 - MPMX19_04827 0.76 -1.5 234,935 - MPMX19_04827 0.76 -0.6 234,935 - MPMX19_04827 0.76 -0.6 234,935 - MPMX19_04827 0.76 -0.6 234,935 - MPMX19_04827 0.76 -1.7 234,935 - MPMX19_04827 0.76 -1.4 234,935 - MPMX19_04827 0.76 +1.6 234,935 - MPMX19_04827 0.76 -1.1 234,935 - MPMX19_04827 0.76 -1.7 235,251 + MPMX19_04828 0.18 -1.2 235,251 + MPMX19_04828 0.18 -1.7 235,251 + MPMX19_04828 0.18 +0.7 235,251 + MPMX19_04828 0.18 +0.0 235,251 + MPMX19_04828 0.18 +0.3 235,251 + MPMX19_04828 0.18 +0.4 235,251 + MPMX19_04828 0.18 -0.8 235,251 + MPMX19_04828 0.18 -0.8 235,252 - MPMX19_04828 0.18 -0.7 235,252 - MPMX19_04828 0.18 -0.5 235,252 - MPMX19_04828 0.18 -0.9 235,252 - MPMX19_04828 0.18 -2.4 235,252 - MPMX19_04828 0.18 -0.9 235,312 - MPMX19_04828 0.24 +1.6 235,312 - MPMX19_04828 0.24 +0.8 235,335 + MPMX19_04828 0.26 +0.1 235,335 + MPMX19_04828 0.26 -0.2 235,335 + MPMX19_04828 0.26 +1.6 235,335 + MPMX19_04828 0.26 -0.3 235,335 + MPMX19_04828 0.26 -0.3 235,335 + MPMX19_04828 0.26 +0.2 235,335 + MPMX19_04828 0.26 +0.1 235,335 + MPMX19_04828 0.26 -1.5 235,335 + MPMX19_04828 0.26 -1.7 235,335 + MPMX19_04828 0.26 -1.2 235,335 + MPMX19_04828 0.26 -1.8 235,336 - MPMX19_04828 0.26 -1.7 235,336 - MPMX19_04828 0.26 -1.5 235,336 - MPMX19_04828 0.26 -0.2 235,336 - MPMX19_04828 0.26 -0.1 235,336 - MPMX19_04828 0.26 -0.8 235,336 - MPMX19_04828 0.26 -0.9 235,336 - MPMX19_04828 0.26 -0.1 235,336 - MPMX19_04828 0.26 -0.6 235,336 - MPMX19_04828 0.26 -0.5 235,336 - MPMX19_04828 0.26 +0.1 235,336 - MPMX19_04828 0.26 +0.1 235,336 - MPMX19_04828 0.26 +0.2 235,336 - MPMX19_04828 0.26 -0.1 235,521 + MPMX19_04828 0.43 -1.8 235,521 + MPMX19_04828 0.43 -0.0 235,521 + MPMX19_04828 0.43 +0.1 235,521 + MPMX19_04828 0.43 -2.1 235,521 + MPMX19_04828 0.43 -0.8 235,521 + MPMX19_04828 0.43 -0.4 235,521 + MPMX19_04828 0.43 -0.9 235,521 + MPMX19_04828 0.43 +0.2 235,521 + MPMX19_04828 0.43 -1.4 235,521 + MPMX19_04828 0.43 +0.2 235,521 + MPMX19_04828 0.43 -0.5 235,521 + MPMX19_04828 0.43 -0.5 235,521 + MPMX19_04828 0.43 +0.3 235,521 + MPMX19_04828 0.43 -0.2 235,522 - MPMX19_04828 0.43 -0.5 235,522 - MPMX19_04828 0.43 -0.2 235,522 - MPMX19_04828 0.43 -0.6 235,522 - MPMX19_04828 0.43 -0.5 235,522 - MPMX19_04828 0.43 +0.1 235,522 - MPMX19_04828 0.43 -1.7 235,522 - MPMX19_04828 0.43 +0.1 235,522 - MPMX19_04828 0.43 +2.2 235,522 - MPMX19_04828 0.43 -0.1 235,581 + MPMX19_04828 0.49 -0.1 235,581 + MPMX19_04828 0.49 -0.9 235,582 - MPMX19_04828 0.49 -0.7 235,582 - MPMX19_04828 0.49 -0.7 235,582 - MPMX19_04828 0.49 -0.8 235,614 + MPMX19_04828 0.52 -1.7 235,615 - MPMX19_04828 0.52 -0.1 235,615 - MPMX19_04828 0.52 +0.6 235,615 - MPMX19_04828 0.52 +1.9 235,615 - MPMX19_04828 0.52 -0.9 235,615 - MPMX19_04828 0.52 -2.5 235,647 + MPMX19_04828 0.55 +0.6 235,647 + MPMX19_04828 0.55 +0.7 235,647 + MPMX19_04828 0.55 +0.1 235,648 - MPMX19_04828 0.55 +2.0 235,648 - MPMX19_04828 0.55 -1.4 235,761 + MPMX19_04828 0.65 -1.1 235,761 + MPMX19_04828 0.65 +0.1 235,761 + MPMX19_04828 0.65 -1.3 235,761 + MPMX19_04828 0.65 -1.1 235,761 + MPMX19_04828 0.65 -1.5 235,761 + MPMX19_04828 0.65 -0.9 235,761 + MPMX19_04828 0.65 +0.1 235,761 + MPMX19_04828 0.65 -0.8 235,761 + MPMX19_04828 0.65 +0.6 235,761 + MPMX19_04828 0.65 -1.7 235,761 + MPMX19_04828 0.65 -1.2 235,761 + MPMX19_04828 0.65 -1.4 235,761 + MPMX19_04828 0.65 -0.4 235,761 + MPMX19_04828 0.65 -0.6 235,761 + MPMX19_04828 0.65 -0.9 235,761 + MPMX19_04828 0.65 -2.5 235,761 + MPMX19_04828 0.65 +0.1 235,761 + MPMX19_04828 0.65 +0.3 235,761 + MPMX19_04828 0.65 -1.1 235,761 + MPMX19_04828 0.65 +0.2 235,761 + MPMX19_04828 0.65 -0.7 235,761 + MPMX19_04828 0.65 -1.1 235,762 - MPMX19_04828 0.65 -1.0 235,762 - MPMX19_04828 0.65 -1.2 235,762 - MPMX19_04828 0.65 -2.4 235,762 - MPMX19_04828 0.65 -0.5 235,762 - MPMX19_04828 0.65 +0.6 235,762 - MPMX19_04828 0.65 -0.4 235,762 - MPMX19_04828 0.65 -1.0 235,762 - MPMX19_04828 0.65 +1.3 235,762 - MPMX19_04828 0.65 -0.2 235,762 - MPMX19_04828 0.65 -0.4 235,762 - MPMX19_04828 0.65 -0.2 235,762 - MPMX19_04828 0.65 +0.3 235,762 - MPMX19_04828 0.65 +0.3 235,762 - MPMX19_04828 0.65 -0.3 235,942 - MPMX19_04828 0.82 +0.3 235,965 + MPMX19_04828 0.84 -0.2 235,966 - MPMX19_04828 0.84 -0.2 235,966 - MPMX19_04828 0.84 -0.4
Or see this region's nucleotide sequence