Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04823 and MPMX19_04824 are separated by 40 nucleotides MPMX19_04824 and MPMX19_04825 are separated by 159 nucleotides
MPMX19_04823: MPMX19_04823 - hypothetical protein, at 228,409 to 229,731
_04823
MPMX19_04824: MPMX19_04824 - Malate synthase G, at 229,772 to 231,931
_04824
MPMX19_04825: MPMX19_04825 - hypothetical protein, at 232,091 to 233,347
_04825
Position (kb) 229
230
231
232 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 228.853 kb on + strand, within MPMX19_04823 at 228.853 kb on + strand, within MPMX19_04823 at 228.853 kb on + strand, within MPMX19_04823 at 228.853 kb on + strand, within MPMX19_04823 at 228.854 kb on - strand, within MPMX19_04823 at 228.854 kb on - strand, within MPMX19_04823 at 228.854 kb on - strand, within MPMX19_04823 at 229.027 kb on + strand, within MPMX19_04823 at 229.027 kb on + strand, within MPMX19_04823 at 229.027 kb on + strand, within MPMX19_04823 at 229.027 kb on + strand, within MPMX19_04823 at 229.027 kb on + strand, within MPMX19_04823 at 229.028 kb on - strand, within MPMX19_04823 at 229.028 kb on - strand, within MPMX19_04823 at 229.028 kb on - strand, within MPMX19_04823 at 229.036 kb on + strand, within MPMX19_04823 at 229.036 kb on + strand, within MPMX19_04823 at 229.036 kb on + strand, within MPMX19_04823 at 229.036 kb on + strand, within MPMX19_04823 at 229.037 kb on - strand, within MPMX19_04823 at 229.037 kb on - strand, within MPMX19_04823 at 229.037 kb on - strand, within MPMX19_04823 at 229.037 kb on - strand, within MPMX19_04823 at 229.037 kb on - strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.507 kb on + strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.508 kb on - strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.582 kb on + strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.583 kb on - strand, within MPMX19_04823 at 229.584 kb on + strand, within MPMX19_04823 at 229.585 kb on - strand, within MPMX19_04823 at 229.585 kb on - strand, within MPMX19_04823 at 229.657 kb on + strand at 229.658 kb on - strand at 229.663 kb on + strand at 229.663 kb on + strand at 229.664 kb on - strand at 229.664 kb on - strand at 229.664 kb on - strand at 229.664 kb on - strand at 229.664 kb on - strand at 229.681 kb on + strand at 229.681 kb on + strand at 229.681 kb on + strand at 229.681 kb on + strand at 229.681 kb on + strand at 229.681 kb on + strand at 229.681 kb on + strand at 229.682 kb on - strand at 229.682 kb on - strand at 229.682 kb on - strand at 229.682 kb on - strand at 229.682 kb on - strand at 229.729 kb on + strand at 229.729 kb on + strand at 229.730 kb on - strand at 229.730 kb on - strand at 229.825 kb on - strand at 229.914 kb on + strand at 229.914 kb on + strand at 229.914 kb on + strand at 229.914 kb on + strand at 229.914 kb on + strand at 229.915 kb on - strand at 229.915 kb on - strand at 229.915 kb on - strand at 229.915 kb on - strand at 229.915 kb on - strand at 230.127 kb on + strand, within MPMX19_04824 at 230.127 kb on + strand, within MPMX19_04824 at 230.127 kb on + strand, within MPMX19_04824 at 230.127 kb on + strand, within MPMX19_04824 at 230.128 kb on - strand, within MPMX19_04824 at 230.128 kb on - strand, within MPMX19_04824 at 230.128 kb on - strand, within MPMX19_04824 at 230.128 kb on - strand, within MPMX19_04824 at 230.286 kb on + strand, within MPMX19_04824 at 230.286 kb on + strand, within MPMX19_04824 at 230.286 kb on + strand, within MPMX19_04824 at 230.286 kb on + strand, within MPMX19_04824 at 230.287 kb on - strand, within MPMX19_04824 at 230.287 kb on - strand, within MPMX19_04824 at 230.287 kb on - strand, within MPMX19_04824 at 230.475 kb on + strand, within MPMX19_04824 at 230.475 kb on + strand, within MPMX19_04824 at 230.475 kb on + strand, within MPMX19_04824 at 230.476 kb on - strand, within MPMX19_04824 at 230.476 kb on - strand, within MPMX19_04824 at 230.769 kb on + strand, within MPMX19_04824 at 230.769 kb on + strand, within MPMX19_04824 at 230.769 kb on + strand, within MPMX19_04824 at 230.770 kb on - strand, within MPMX19_04824 at 230.770 kb on - strand, within MPMX19_04824 at 230.770 kb on - strand, within MPMX19_04824 at 230.770 kb on - strand, within MPMX19_04824 at 230.770 kb on - strand, within MPMX19_04824 at 230.770 kb on - strand, within MPMX19_04824 at 230.770 kb on - strand, within MPMX19_04824 at 230.770 kb on - strand, within MPMX19_04824 at 230.979 kb on + strand, within MPMX19_04824 at 230.979 kb on + strand, within MPMX19_04824 at 230.979 kb on + strand, within MPMX19_04824 at 230.980 kb on - strand, within MPMX19_04824 at 230.980 kb on - strand, within MPMX19_04824 at 230.980 kb on - strand, within MPMX19_04824 at 230.980 kb on - strand, within MPMX19_04824 at 231.364 kb on - strand, within MPMX19_04824 at 231.462 kb on + strand, within MPMX19_04824 at 231.462 kb on + strand, within MPMX19_04824 at 231.462 kb on + strand, within MPMX19_04824 at 231.462 kb on + strand, within MPMX19_04824 at 231.463 kb on - strand, within MPMX19_04824 at 231.463 kb on - strand, within MPMX19_04824 at 231.504 kb on + strand, within MPMX19_04824 at 231.504 kb on + strand, within MPMX19_04824 at 231.505 kb on - strand, within MPMX19_04824 at 231.505 kb on - strand, within MPMX19_04824 at 231.505 kb on - strand, within MPMX19_04824 at 231.505 kb on - strand, within MPMX19_04824 at 231.505 kb on - strand, within MPMX19_04824 at 231.516 kb on + strand, within MPMX19_04824 at 231.516 kb on + strand, within MPMX19_04824 at 231.516 kb on + strand, within MPMX19_04824 at 231.516 kb on + strand, within MPMX19_04824 at 231.516 kb on + strand, within MPMX19_04824 at 231.516 kb on + strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.555 kb on + strand, within MPMX19_04824 at 231.555 kb on + strand, within MPMX19_04824 at 231.556 kb on - strand, within MPMX19_04824 at 231.600 kb on + strand, within MPMX19_04824 at 231.600 kb on + strand, within MPMX19_04824 at 231.600 kb on + strand, within MPMX19_04824 at 231.600 kb on + strand, within MPMX19_04824 at 231.601 kb on - strand, within MPMX19_04824 at 231.601 kb on - strand, within MPMX19_04824 at 231.601 kb on - strand, within MPMX19_04824 at 231.663 kb on + strand, within MPMX19_04824 at 231.663 kb on + strand, within MPMX19_04824 at 231.663 kb on + strand, within MPMX19_04824 at 231.663 kb on + strand, within MPMX19_04824 at 231.664 kb on - strand, within MPMX19_04824 at 231.664 kb on - strand, within MPMX19_04824 at 231.664 kb on - strand, within MPMX19_04824 at 231.664 kb on - strand, within MPMX19_04824 at 231.690 kb on + strand, within MPMX19_04824 at 231.690 kb on + strand, within MPMX19_04824 at 231.690 kb on + strand, within MPMX19_04824 at 231.690 kb on + strand, within MPMX19_04824 at 231.773 kb on + strand at 231.773 kb on + strand at 231.773 kb on + strand at 231.774 kb on - strand at 231.774 kb on - strand at 231.882 kb on + strand at 231.882 kb on + strand at 231.882 kb on + strand at 231.882 kb on + strand at 231.883 kb on - strand at 231.883 kb on - strand at 232.047 kb on + strand at 232.047 kb on + strand at 232.048 kb on - strand at 232.048 kb on - strand at 232.060 kb on + strand at 232.061 kb on - strand at 232.061 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 228,853 + MPMX19_04823 0.34 -0.9 228,853 + MPMX19_04823 0.34 -0.5 228,853 + MPMX19_04823 0.34 +0.5 228,853 + MPMX19_04823 0.34 -1.3 228,854 - MPMX19_04823 0.34 +0.2 228,854 - MPMX19_04823 0.34 -0.1 228,854 - MPMX19_04823 0.34 -1.1 229,027 + MPMX19_04823 0.47 -0.8 229,027 + MPMX19_04823 0.47 -0.4 229,027 + MPMX19_04823 0.47 -1.1 229,027 + MPMX19_04823 0.47 -0.5 229,027 + MPMX19_04823 0.47 -0.9 229,028 - MPMX19_04823 0.47 -1.8 229,028 - MPMX19_04823 0.47 +1.3 229,028 - MPMX19_04823 0.47 +0.5 229,036 + MPMX19_04823 0.47 -0.4 229,036 + MPMX19_04823 0.47 -1.1 229,036 + MPMX19_04823 0.47 +0.2 229,036 + MPMX19_04823 0.47 -0.9 229,037 - MPMX19_04823 0.47 -0.4 229,037 - MPMX19_04823 0.47 -0.3 229,037 - MPMX19_04823 0.47 -0.1 229,037 - MPMX19_04823 0.47 -0.2 229,037 - MPMX19_04823 0.47 +0.2 229,507 + MPMX19_04823 0.83 -1.5 229,507 + MPMX19_04823 0.83 -0.4 229,507 + MPMX19_04823 0.83 +1.8 229,507 + MPMX19_04823 0.83 -3.6 229,507 + MPMX19_04823 0.83 +0.8 229,507 + MPMX19_04823 0.83 -1.3 229,507 + MPMX19_04823 0.83 -1.7 229,507 + MPMX19_04823 0.83 -0.8 229,507 + MPMX19_04823 0.83 -1.2 229,507 + MPMX19_04823 0.83 -1.9 229,507 + MPMX19_04823 0.83 -1.5 229,507 + MPMX19_04823 0.83 -0.3 229,507 + MPMX19_04823 0.83 -0.1 229,507 + MPMX19_04823 0.83 +0.2 229,507 + MPMX19_04823 0.83 -0.7 229,507 + MPMX19_04823 0.83 -0.7 229,507 + MPMX19_04823 0.83 +0.1 229,507 + MPMX19_04823 0.83 -1.4 229,508 - MPMX19_04823 0.83 +1.1 229,508 - MPMX19_04823 0.83 +0.2 229,508 - MPMX19_04823 0.83 -1.2 229,508 - MPMX19_04823 0.83 -1.1 229,508 - MPMX19_04823 0.83 +1.6 229,508 - MPMX19_04823 0.83 -0.4 229,508 - MPMX19_04823 0.83 -0.9 229,508 - MPMX19_04823 0.83 -1.4 229,508 - MPMX19_04823 0.83 -1.3 229,508 - MPMX19_04823 0.83 +0.1 229,508 - MPMX19_04823 0.83 +0.1 229,508 - MPMX19_04823 0.83 -0.4 229,508 - MPMX19_04823 0.83 -1.2 229,508 - MPMX19_04823 0.83 -0.7 229,508 - MPMX19_04823 0.83 -2.5 229,582 + MPMX19_04823 0.89 -0.4 229,582 + MPMX19_04823 0.89 -0.7 229,582 + MPMX19_04823 0.89 -0.3 229,582 + MPMX19_04823 0.89 -0.9 229,582 + MPMX19_04823 0.89 -0.5 229,582 + MPMX19_04823 0.89 -0.5 229,582 + MPMX19_04823 0.89 -2.3 229,582 + MPMX19_04823 0.89 -1.4 229,582 + MPMX19_04823 0.89 -0.4 229,582 + MPMX19_04823 0.89 +0.4 229,582 + MPMX19_04823 0.89 -0.9 229,582 + MPMX19_04823 0.89 -0.4 229,583 - MPMX19_04823 0.89 -1.2 229,583 - MPMX19_04823 0.89 -1.2 229,583 - MPMX19_04823 0.89 -0.8 229,583 - MPMX19_04823 0.89 +0.3 229,583 - MPMX19_04823 0.89 +0.4 229,583 - MPMX19_04823 0.89 -0.3 229,583 - MPMX19_04823 0.89 +1.6 229,583 - MPMX19_04823 0.89 -0.9 229,583 - MPMX19_04823 0.89 +0.0 229,583 - MPMX19_04823 0.89 -1.7 229,583 - MPMX19_04823 0.89 +1.2 229,583 - MPMX19_04823 0.89 +0.5 229,583 - MPMX19_04823 0.89 -0.3 229,583 - MPMX19_04823 0.89 +0.5 229,583 - MPMX19_04823 0.89 +0.2 229,583 - MPMX19_04823 0.89 +0.2 229,584 + MPMX19_04823 0.89 +0.2 229,585 - MPMX19_04823 0.89 +0.3 229,585 - MPMX19_04823 0.89 -0.6 229,657 + -0.7 229,658 - +0.6 229,663 + +0.7 229,663 + -1.2 229,664 - -0.7 229,664 - +0.1 229,664 - +0.1 229,664 - -0.9 229,664 - +1.0 229,681 + -0.4 229,681 + +0.6 229,681 + -0.5 229,681 + -2.4 229,681 + -0.2 229,681 + -1.4 229,681 + +0.6 229,682 - -1.5 229,682 - -0.5 229,682 - +0.8 229,682 - -0.5 229,682 - -0.3 229,729 + +2.1 229,729 + -0.8 229,730 - -0.4 229,730 - +0.0 229,825 - +0.3 229,914 + -0.3 229,914 + +0.2 229,914 + -0.8 229,914 + +0.4 229,914 + -0.8 229,915 - -1.4 229,915 - +0.4 229,915 - -1.1 229,915 - -0.6 229,915 - -0.2 230,127 + MPMX19_04824 0.16 -0.5 230,127 + MPMX19_04824 0.16 +0.6 230,127 + MPMX19_04824 0.16 -1.0 230,127 + MPMX19_04824 0.16 -0.7 230,128 - MPMX19_04824 0.16 +0.1 230,128 - MPMX19_04824 0.16 -0.6 230,128 - MPMX19_04824 0.16 -0.4 230,128 - MPMX19_04824 0.16 -0.6 230,286 + MPMX19_04824 0.24 +0.2 230,286 + MPMX19_04824 0.24 -1.8 230,286 + MPMX19_04824 0.24 -1.8 230,286 + MPMX19_04824 0.24 -0.2 230,287 - MPMX19_04824 0.24 -3.4 230,287 - MPMX19_04824 0.24 +0.1 230,287 - MPMX19_04824 0.24 -1.5 230,475 + MPMX19_04824 0.33 -1.3 230,475 + MPMX19_04824 0.33 -1.9 230,475 + MPMX19_04824 0.33 -0.2 230,476 - MPMX19_04824 0.33 -0.8 230,476 - MPMX19_04824 0.33 -0.2 230,769 + MPMX19_04824 0.46 +1.2 230,769 + MPMX19_04824 0.46 -1.3 230,769 + MPMX19_04824 0.46 -1.4 230,770 - MPMX19_04824 0.46 +0.9 230,770 - MPMX19_04824 0.46 -1.4 230,770 - MPMX19_04824 0.46 +3.2 230,770 - MPMX19_04824 0.46 +0.2 230,770 - MPMX19_04824 0.46 -0.8 230,770 - MPMX19_04824 0.46 +0.6 230,770 - MPMX19_04824 0.46 -0.7 230,770 - MPMX19_04824 0.46 -0.0 230,979 + MPMX19_04824 0.56 +0.2 230,979 + MPMX19_04824 0.56 -1.4 230,979 + MPMX19_04824 0.56 +0.2 230,980 - MPMX19_04824 0.56 -0.1 230,980 - MPMX19_04824 0.56 +0.5 230,980 - MPMX19_04824 0.56 -0.4 230,980 - MPMX19_04824 0.56 -1.9 231,364 - MPMX19_04824 0.74 -0.9 231,462 + MPMX19_04824 0.78 -0.4 231,462 + MPMX19_04824 0.78 -0.2 231,462 + MPMX19_04824 0.78 -0.1 231,462 + MPMX19_04824 0.78 +0.8 231,463 - MPMX19_04824 0.78 -1.2 231,463 - MPMX19_04824 0.78 +2.0 231,504 + MPMX19_04824 0.80 -0.4 231,504 + MPMX19_04824 0.80 -1.2 231,505 - MPMX19_04824 0.80 -1.2 231,505 - MPMX19_04824 0.80 +0.2 231,505 - MPMX19_04824 0.80 -2.5 231,505 - MPMX19_04824 0.80 -0.2 231,505 - MPMX19_04824 0.80 +0.1 231,516 + MPMX19_04824 0.81 +1.0 231,516 + MPMX19_04824 0.81 +0.3 231,516 + MPMX19_04824 0.81 +0.3 231,516 + MPMX19_04824 0.81 -1.2 231,516 + MPMX19_04824 0.81 +1.4 231,516 + MPMX19_04824 0.81 -0.4 231,517 - MPMX19_04824 0.81 -0.2 231,517 - MPMX19_04824 0.81 -1.7 231,517 - MPMX19_04824 0.81 -1.7 231,517 - MPMX19_04824 0.81 -1.5 231,517 - MPMX19_04824 0.81 -0.7 231,517 - MPMX19_04824 0.81 -0.2 231,517 - MPMX19_04824 0.81 -1.4 231,517 - MPMX19_04824 0.81 +0.2 231,517 - MPMX19_04824 0.81 -0.9 231,517 - MPMX19_04824 0.81 -0.9 231,517 - MPMX19_04824 0.81 -0.7 231,555 + MPMX19_04824 0.83 -0.4 231,555 + MPMX19_04824 0.83 -0.3 231,556 - MPMX19_04824 0.83 -0.2 231,600 + MPMX19_04824 0.85 -1.4 231,600 + MPMX19_04824 0.85 -1.4 231,600 + MPMX19_04824 0.85 +0.4 231,600 + MPMX19_04824 0.85 -1.5 231,601 - MPMX19_04824 0.85 +0.6 231,601 - MPMX19_04824 0.85 +0.1 231,601 - MPMX19_04824 0.85 +0.8 231,663 + MPMX19_04824 0.88 -1.1 231,663 + MPMX19_04824 0.88 -1.1 231,663 + MPMX19_04824 0.88 -0.9 231,663 + MPMX19_04824 0.88 -1.5 231,664 - MPMX19_04824 0.88 +0.1 231,664 - MPMX19_04824 0.88 -1.9 231,664 - MPMX19_04824 0.88 -1.7 231,664 - MPMX19_04824 0.88 -0.4 231,690 + MPMX19_04824 0.89 -0.8 231,690 + MPMX19_04824 0.89 -0.9 231,690 + MPMX19_04824 0.89 -0.3 231,690 + MPMX19_04824 0.89 -0.9 231,773 + -0.6 231,773 + -0.5 231,773 + +0.8 231,774 - +1.5 231,774 - -0.6 231,882 + -0.0 231,882 + +0.4 231,882 + -0.2 231,882 + -1.3 231,883 - +0.5 231,883 - -0.2 232,047 + +0.2 232,047 + +0.9 232,048 - -1.1 232,048 - +0.0 232,060 + -0.4 232,061 - -0.7 232,061 - +0.1
Or see this region's nucleotide sequence