Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04815 and MPMX19_04816 are separated by 87 nucleotides MPMX19_04816 and MPMX19_04817 are separated by 227 nucleotides MPMX19_04817 and MPMX19_04818 are separated by 261 nucleotides
MPMX19_04815: MPMX19_04815 - Adenylosuccinate synthetase, at 219,540 to 220,832
_04815
MPMX19_04816: MPMX19_04816 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 220,920 to 221,624
_04816
MPMX19_04817: MPMX19_04817 - HTH-type transcriptional repressor NsrR, at 221,852 to 222,304
_04817
MPMX19_04818: MPMX19_04818 - Hydroxyacylglutathione hydrolase GloC, at 222,566 to 223,198
_04818
Position (kb) 220
221
222 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 220.972 kb on + strand at 220.972 kb on + strand at 220.972 kb on + strand at 220.972 kb on + strand at 220.973 kb on - strand at 220.973 kb on - strand at 220.973 kb on - strand at 220.973 kb on - strand at 220.973 kb on - strand at 221.047 kb on - strand, within MPMX19_04816 at 221.131 kb on + strand, within MPMX19_04816 at 221.131 kb on + strand, within MPMX19_04816 at 221.131 kb on + strand, within MPMX19_04816 at 221.131 kb on + strand, within MPMX19_04816 at 221.131 kb on + strand, within MPMX19_04816 at 221.132 kb on - strand, within MPMX19_04816 at 221.132 kb on - strand, within MPMX19_04816 at 221.132 kb on - strand, within MPMX19_04816 at 221.132 kb on - strand, within MPMX19_04816 at 221.132 kb on - strand, within MPMX19_04816 at 221.132 kb on - strand, within MPMX19_04816 at 221.156 kb on - strand, within MPMX19_04816 at 221.156 kb on - strand, within MPMX19_04816 at 221.156 kb on - strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.309 kb on - strand, within MPMX19_04816 at 221.309 kb on - strand, within MPMX19_04816 at 221.309 kb on - strand, within MPMX19_04816 at 221.659 kb on + strand at 221.659 kb on + strand at 221.659 kb on + strand at 221.659 kb on + strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.733 kb on - strand at 221.816 kb on + strand at 221.838 kb on + strand at 221.847 kb on + strand at 221.847 kb on + strand at 221.847 kb on + strand at 221.847 kb on + strand at 221.847 kb on + strand at 221.850 kb on + strand at 221.850 kb on + strand at 221.850 kb on + strand at 222.200 kb on - strand, within MPMX19_04817 at 222.282 kb on + strand at 222.282 kb on + strand at 222.282 kb on + strand at 222.282 kb on + strand at 222.283 kb on - strand at 222.283 kb on - strand at 222.283 kb on - strand at 222.320 kb on - strand at 222.320 kb on - strand at 222.322 kb on + strand at 222.323 kb on - strand at 222.323 kb on - strand at 222.356 kb on + strand at 222.357 kb on - strand at 222.357 kb on - strand at 222.357 kb on - strand at 222.357 kb on - strand at 222.372 kb on - strand at 222.381 kb on + strand at 222.382 kb on - strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.523 kb on + strand at 222.523 kb on + strand at 222.524 kb on - strand at 222.524 kb on - strand at 222.524 kb on - strand at 222.524 kb on - strand at 222.524 kb on - strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.538 kb on - strand at 222.538 kb on - strand at 222.538 kb on - strand at 222.538 kb on - strand at 222.538 kb on - strand at 222.538 kb on - strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 220,972 + -0.7 220,972 + -1.4 220,972 + -0.8 220,972 + +0.5 220,973 - +1.1 220,973 - -1.3 220,973 - +0.9 220,973 - +0.3 220,973 - -2.1 221,047 - MPMX19_04816 0.18 -0.4 221,131 + MPMX19_04816 0.30 +0.1 221,131 + MPMX19_04816 0.30 +0.8 221,131 + MPMX19_04816 0.30 +0.9 221,131 + MPMX19_04816 0.30 -1.3 221,131 + MPMX19_04816 0.30 +0.6 221,132 - MPMX19_04816 0.30 -0.8 221,132 - MPMX19_04816 0.30 -1.7 221,132 - MPMX19_04816 0.30 +0.1 221,132 - MPMX19_04816 0.30 -0.5 221,132 - MPMX19_04816 0.30 -0.4 221,132 - MPMX19_04816 0.30 -1.4 221,156 - MPMX19_04816 0.33 -0.0 221,156 - MPMX19_04816 0.33 -1.2 221,156 - MPMX19_04816 0.33 -0.0 221,308 + MPMX19_04816 0.55 -1.7 221,308 + MPMX19_04816 0.55 -0.7 221,308 + MPMX19_04816 0.55 -0.8 221,308 + MPMX19_04816 0.55 +0.6 221,308 + MPMX19_04816 0.55 +0.2 221,308 + MPMX19_04816 0.55 -1.7 221,308 + MPMX19_04816 0.55 +2.2 221,308 + MPMX19_04816 0.55 +0.1 221,308 + MPMX19_04816 0.55 +0.4 221,308 + MPMX19_04816 0.55 +0.4 221,308 + MPMX19_04816 0.55 -0.1 221,308 + MPMX19_04816 0.55 +1.3 221,308 + MPMX19_04816 0.55 +0.3 221,309 - MPMX19_04816 0.55 -0.6 221,309 - MPMX19_04816 0.55 -0.1 221,309 - MPMX19_04816 0.55 -1.6 221,659 + -0.4 221,659 + -0.6 221,659 + +0.6 221,659 + +0.1 221,660 - -0.8 221,660 - +0.3 221,660 - -0.6 221,660 - -0.6 221,660 - -0.0 221,660 - +0.3 221,660 - +0.2 221,733 - +1.4 221,816 + -0.2 221,838 + -0.1 221,847 + +1.2 221,847 + +0.3 221,847 + -0.1 221,847 + -0.1 221,847 + +0.5 221,850 + +1.6 221,850 + -0.9 221,850 + -1.3 222,200 - MPMX19_04817 0.77 +0.8 222,282 + -0.9 222,282 + +1.1 222,282 + +0.8 222,282 + +2.6 222,283 - -0.1 222,283 - -0.5 222,283 - -0.1 222,320 - -0.2 222,320 - +0.6 222,322 + -1.7 222,323 - -0.5 222,323 - -1.7 222,356 + +0.8 222,357 - -0.8 222,357 - +0.1 222,357 - +1.6 222,357 - +0.7 222,372 - -1.4 222,381 + +0.1 222,382 - +1.2 222,436 + +2.4 222,436 + -0.4 222,436 + +0.3 222,436 + -0.3 222,436 + -0.7 222,436 + -0.0 222,436 + -0.7 222,437 - -0.7 222,437 - -2.2 222,437 - -0.3 222,437 - -0.7 222,437 - -0.9 222,437 - -1.1 222,437 - -2.8 222,523 + -3.0 222,523 + -1.9 222,524 - -0.8 222,524 - -1.7 222,524 - -0.4 222,524 - -1.9 222,524 - -0.7 222,537 + -1.0 222,537 + -0.4 222,537 + +0.3 222,537 + -1.5 222,537 + -0.7 222,537 + -0.5 222,537 + -2.2 222,537 + -1.0 222,538 - -0.3 222,538 - -1.8 222,538 - -0.2 222,538 - -0.4 222,538 - -1.2 222,538 - +0.6 222,572 + -0.2 222,572 + -0.4 222,572 + -0.2 222,572 + -0.4 222,572 + -0.7 222,572 + -0.0 222,572 + +0.2 222,572 + -0.2 222,572 + -1.0 222,572 + -0.7 222,572 + -1.5 222,573 - -1.0 222,573 - -0.4 222,573 - -0.5 222,573 - -0.5 222,573 - -0.1 222,573 - -0.5 222,573 - -1.8 222,573 - +1.2
Or see this region's nucleotide sequence