Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04789

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04788 and MPMX19_04789 are separated by 5 nucleotidesMPMX19_04789 and MPMX19_04790 overlap by 4 nucleotidesMPMX19_04790 and MPMX19_04791 overlap by 8 nucleotides MPMX19_04788: MPMX19_04788 - D-inositol-3-phosphate glycosyltransferase, at 185,966 to 187,231 _04788 MPMX19_04789: MPMX19_04789 - hypothetical protein, at 187,237 to 188,124 _04789 MPMX19_04790: MPMX19_04790 - hypothetical protein, at 188,121 to 188,927 _04790 MPMX19_04791: MPMX19_04791 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, at 188,920 to 189,663 _04791 Position (kb) 187 188 189Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 186.519 kb on + strand, within MPMX19_04788at 186.519 kb on + strand, within MPMX19_04788at 186.519 kb on + strand, within MPMX19_04788at 186.519 kb on + strand, within MPMX19_04788at 186.519 kb on + strand, within MPMX19_04788at 186.519 kb on + strand, within MPMX19_04788at 186.519 kb on + strand, within MPMX19_04788at 186.519 kb on + strand, within MPMX19_04788at 186.519 kb on + strand, within MPMX19_04788at 186.520 kb on - strand, within MPMX19_04788at 186.520 kb on - strand, within MPMX19_04788at 186.520 kb on - strand, within MPMX19_04788at 186.975 kb on + strand, within MPMX19_04788at 186.975 kb on + strand, within MPMX19_04788at 186.975 kb on + strand, within MPMX19_04788at 186.976 kb on - strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.041 kb on + strand, within MPMX19_04788at 187.042 kb on - strand, within MPMX19_04788at 187.042 kb on - strand, within MPMX19_04788at 187.042 kb on - strand, within MPMX19_04788at 187.042 kb on - strand, within MPMX19_04788at 187.042 kb on - strand, within MPMX19_04788at 187.042 kb on - strand, within MPMX19_04788at 187.042 kb on - strand, within MPMX19_04788at 187.044 kb on + strand, within MPMX19_04788at 187.044 kb on + strand, within MPMX19_04788at 187.044 kb on + strand, within MPMX19_04788at 187.045 kb on - strand, within MPMX19_04788at 187.045 kb on - strand, within MPMX19_04788at 187.045 kb on - strand, within MPMX19_04788at 187.045 kb on - strand, within MPMX19_04788at 187.209 kb on + strandat 187.209 kb on + strandat 187.209 kb on + strandat 187.209 kb on + strandat 187.209 kb on + strandat 187.209 kb on + strandat 187.210 kb on - strandat 187.210 kb on - strandat 187.260 kb on + strandat 187.261 kb on - strandat 187.261 kb on - strandat 187.261 kb on - strandat 187.442 kb on + strand, within MPMX19_04789at 187.442 kb on + strand, within MPMX19_04789at 187.442 kb on + strand, within MPMX19_04789at 187.442 kb on + strand, within MPMX19_04789at 187.443 kb on - strand, within MPMX19_04789at 187.443 kb on - strand, within MPMX19_04789at 187.443 kb on - strand, within MPMX19_04789at 187.481 kb on + strand, within MPMX19_04789at 187.482 kb on - strand, within MPMX19_04789at 187.482 kb on - strand, within MPMX19_04789at 187.526 kb on + strand, within MPMX19_04789at 187.526 kb on + strand, within MPMX19_04789at 187.526 kb on + strand, within MPMX19_04789at 187.526 kb on + strand, within MPMX19_04789at 187.527 kb on - strand, within MPMX19_04789at 187.527 kb on - strand, within MPMX19_04789at 187.527 kb on - strand, within MPMX19_04789at 187.527 kb on - strand, within MPMX19_04789at 187.527 kb on - strand, within MPMX19_04789at 187.527 kb on - strand, within MPMX19_04789at 187.527 kb on - strand, within MPMX19_04789at 187.556 kb on + strand, within MPMX19_04789at 187.556 kb on + strand, within MPMX19_04789at 187.556 kb on + strand, within MPMX19_04789at 187.556 kb on + strand, within MPMX19_04789at 187.556 kb on + strand, within MPMX19_04789at 187.556 kb on + strand, within MPMX19_04789at 187.556 kb on + strand, within MPMX19_04789at 187.556 kb on + strand, within MPMX19_04789at 187.557 kb on - strand, within MPMX19_04789at 187.557 kb on - strand, within MPMX19_04789at 187.557 kb on - strand, within MPMX19_04789at 187.557 kb on - strand, within MPMX19_04789at 187.625 kb on + strand, within MPMX19_04789at 187.625 kb on + strand, within MPMX19_04789at 187.626 kb on - strand, within MPMX19_04789at 187.703 kb on + strand, within MPMX19_04789at 187.704 kb on - strand, within MPMX19_04789at 187.704 kb on - strand, within MPMX19_04789at 187.704 kb on - strand, within MPMX19_04789at 187.704 kb on - strand, within MPMX19_04789at 187.704 kb on - strand, within MPMX19_04789at 187.966 kb on + strand, within MPMX19_04789at 187.966 kb on + strand, within MPMX19_04789at 187.967 kb on - strand, within MPMX19_04789at 187.967 kb on - strand, within MPMX19_04789at 187.967 kb on - strand, within MPMX19_04789at 187.967 kb on - strand, within MPMX19_04789at 187.976 kb on + strand, within MPMX19_04789at 187.976 kb on + strand, within MPMX19_04789at 187.977 kb on - strand, within MPMX19_04789at 187.977 kb on - strand, within MPMX19_04789at 188.470 kb on + strand, within MPMX19_04790at 188.470 kb on + strand, within MPMX19_04790at 188.470 kb on + strand, within MPMX19_04790at 188.470 kb on + strand, within MPMX19_04790at 188.470 kb on + strand, within MPMX19_04790at 188.470 kb on + strand, within MPMX19_04790at 188.471 kb on - strand, within MPMX19_04790at 188.471 kb on - strand, within MPMX19_04790at 188.471 kb on - strand, within MPMX19_04790at 188.471 kb on - strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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186,519 + MPMX19_04788 0.44 +0.0
186,519 + MPMX19_04788 0.44 -2.2
186,519 + MPMX19_04788 0.44 -1.1
186,519 + MPMX19_04788 0.44 -2.6
186,519 + MPMX19_04788 0.44 -0.8
186,519 + MPMX19_04788 0.44 -0.1
186,519 + MPMX19_04788 0.44 +0.7
186,519 + MPMX19_04788 0.44 -1.0
186,519 + MPMX19_04788 0.44 -0.7
186,520 - MPMX19_04788 0.44 +0.1
186,520 - MPMX19_04788 0.44 -0.5
186,520 - MPMX19_04788 0.44 +0.2
186,975 + MPMX19_04788 0.80 +0.6
186,975 + MPMX19_04788 0.80 -1.2
186,975 + MPMX19_04788 0.80 -2.4
186,976 - MPMX19_04788 0.80 -0.2
187,041 + MPMX19_04788 0.85 -0.6
187,041 + MPMX19_04788 0.85 -0.7
187,041 + MPMX19_04788 0.85 +0.5
187,041 + MPMX19_04788 0.85 +0.6
187,041 + MPMX19_04788 0.85 -0.1
187,041 + MPMX19_04788 0.85 -1.8
187,041 + MPMX19_04788 0.85 +0.0
187,041 + MPMX19_04788 0.85 -0.1
187,041 + MPMX19_04788 0.85 +0.0
187,041 + MPMX19_04788 0.85 +0.0
187,041 + MPMX19_04788 0.85 +0.4
187,042 - MPMX19_04788 0.85 -0.8
187,042 - MPMX19_04788 0.85 +0.6
187,042 - MPMX19_04788 0.85 -0.4
187,042 - MPMX19_04788 0.85 -1.5
187,042 - MPMX19_04788 0.85 -1.6
187,042 - MPMX19_04788 0.85 +1.6
187,042 - MPMX19_04788 0.85 +0.9
187,044 + MPMX19_04788 0.85 +0.3
187,044 + MPMX19_04788 0.85 +0.1
187,044 + MPMX19_04788 0.85 -0.1
187,045 - MPMX19_04788 0.85 +0.0
187,045 - MPMX19_04788 0.85 +0.1
187,045 - MPMX19_04788 0.85 -1.1
187,045 - MPMX19_04788 0.85 +0.1
187,209 + -0.2
187,209 + -0.8
187,209 + -0.3
187,209 + -0.4
187,209 + +0.4
187,209 + -0.6
187,210 - -2.5
187,210 - -2.0
187,260 + -1.6
187,261 - +0.6
187,261 - -0.2
187,261 - +0.6
187,442 + MPMX19_04789 0.23 +0.6
187,442 + MPMX19_04789 0.23 -0.2
187,442 + MPMX19_04789 0.23 -0.6
187,442 + MPMX19_04789 0.23 +0.4
187,443 - MPMX19_04789 0.23 -0.4
187,443 - MPMX19_04789 0.23 -1.0
187,443 - MPMX19_04789 0.23 -0.2
187,481 + MPMX19_04789 0.27 -0.4
187,482 - MPMX19_04789 0.28 -0.6
187,482 - MPMX19_04789 0.28 -0.5
187,526 + MPMX19_04789 0.33 +0.0
187,526 + MPMX19_04789 0.33 -1.6
187,526 + MPMX19_04789 0.33 +0.3
187,526 + MPMX19_04789 0.33 -3.3
187,527 - MPMX19_04789 0.33 -1.4
187,527 - MPMX19_04789 0.33 -0.2
187,527 - MPMX19_04789 0.33 +0.0
187,527 - MPMX19_04789 0.33 -0.1
187,527 - MPMX19_04789 0.33 +0.8
187,527 - MPMX19_04789 0.33 +0.0
187,527 - MPMX19_04789 0.33 -1.0
187,556 + MPMX19_04789 0.36 +0.4
187,556 + MPMX19_04789 0.36 +0.8
187,556 + MPMX19_04789 0.36 -1.9
187,556 + MPMX19_04789 0.36 -0.9
187,556 + MPMX19_04789 0.36 -1.0
187,556 + MPMX19_04789 0.36 -0.3
187,556 + MPMX19_04789 0.36 -0.6
187,556 + MPMX19_04789 0.36 -0.1
187,557 - MPMX19_04789 0.36 -0.4
187,557 - MPMX19_04789 0.36 -0.4
187,557 - MPMX19_04789 0.36 -0.5
187,557 - MPMX19_04789 0.36 +0.7
187,625 + MPMX19_04789 0.44 -2.0
187,625 + MPMX19_04789 0.44 -0.2
187,626 - MPMX19_04789 0.44 -0.5
187,703 + MPMX19_04789 0.52 -1.0
187,704 - MPMX19_04789 0.53 +0.3
187,704 - MPMX19_04789 0.53 +0.2
187,704 - MPMX19_04789 0.53 -0.6
187,704 - MPMX19_04789 0.53 +1.0
187,704 - MPMX19_04789 0.53 +0.0
187,966 + MPMX19_04789 0.82 +0.5
187,966 + MPMX19_04789 0.82 +1.5
187,967 - MPMX19_04789 0.82 +0.5
187,967 - MPMX19_04789 0.82 -0.3
187,967 - MPMX19_04789 0.82 -2.5
187,967 - MPMX19_04789 0.82 +0.9
187,976 + MPMX19_04789 0.83 +0.6
187,976 + MPMX19_04789 0.83 +0.2
187,977 - MPMX19_04789 0.83 -0.8
187,977 - MPMX19_04789 0.83 -1.8
188,470 + MPMX19_04790 0.43 +1.4
188,470 + MPMX19_04790 0.43 -1.0
188,470 + MPMX19_04790 0.43 -0.7
188,470 + MPMX19_04790 0.43 +1.2
188,470 + MPMX19_04790 0.43 +0.0
188,470 + MPMX19_04790 0.43 -0.5
188,471 - MPMX19_04790 0.43 +0.3
188,471 - MPMX19_04790 0.43 +0.3
188,471 - MPMX19_04790 0.43 -0.9
188,471 - MPMX19_04790 0.43 +0.8
188,812 + MPMX19_04790 0.86 +0.0
188,812 + MPMX19_04790 0.86 +0.1
188,812 + MPMX19_04790 0.86 +0.5
188,812 + MPMX19_04790 0.86 -0.4
188,812 + MPMX19_04790 0.86 -1.2
188,812 + MPMX19_04790 0.86 -2.3
188,812 + MPMX19_04790 0.86 +1.8
188,812 + MPMX19_04790 0.86 -0.7
188,812 + MPMX19_04790 0.86 -0.3
188,812 + MPMX19_04790 0.86 -0.6
188,812 + MPMX19_04790 0.86 -0.7
188,812 + MPMX19_04790 0.86 +1.1
188,812 + MPMX19_04790 0.86 -0.2
188,812 + MPMX19_04790 0.86 -0.6
188,812 + MPMX19_04790 0.86 -2.6
188,812 + MPMX19_04790 0.86 -0.3
188,812 + MPMX19_04790 0.86 -0.5
188,812 + MPMX19_04790 0.86 -0.4
188,812 + MPMX19_04790 0.86 -0.3
188,812 + MPMX19_04790 0.86 +0.5
188,812 + MPMX19_04790 0.86 -0.1
188,812 + MPMX19_04790 0.86 +0.9
188,812 + MPMX19_04790 0.86 -0.4
188,812 + MPMX19_04790 0.86 -0.4
188,812 + MPMX19_04790 0.86 -0.9
188,813 - MPMX19_04790 0.86 +0.9
188,813 - MPMX19_04790 0.86 -0.4
188,813 - MPMX19_04790 0.86 -0.9
188,813 - MPMX19_04790 0.86 -1.3
188,813 - MPMX19_04790 0.86 +0.3
188,813 - MPMX19_04790 0.86 -1.8
188,813 - MPMX19_04790 0.86 -1.0
188,813 - MPMX19_04790 0.86 -0.2
188,813 - MPMX19_04790 0.86 +0.3
188,813 - MPMX19_04790 0.86 +0.6
188,813 - MPMX19_04790 0.86 +1.1
188,813 - MPMX19_04790 0.86 -0.4
188,813 - MPMX19_04790 0.86 +0.3

Or see this region's nucleotide sequence