Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04784

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04783 and MPMX19_04784 overlap by 8 nucleotidesMPMX19_04784 and MPMX19_04785 overlap by 35 nucleotides MPMX19_04783: MPMX19_04783 - Ubiquinone biosynthesis O-methyltransferase, mitochondrial, at 179,608 to 180,495 _04783 MPMX19_04784: MPMX19_04784 - N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase, at 180,488 to 182,758 _04784 MPMX19_04785: MPMX19_04785 - hypothetical protein, at 182,724 to 183,944 _04785 Position (kb) 180 181 182 183Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 179.596 kb on + strandat 179.596 kb on + strandat 179.597 kb on - strandat 179.597 kb on - strandat 179.898 kb on + strand, within MPMX19_04783at 179.899 kb on + strand, within MPMX19_04783at 179.899 kb on + strand, within MPMX19_04783at 179.900 kb on - strand, within MPMX19_04783at 180.088 kb on + strand, within MPMX19_04783at 180.088 kb on + strand, within MPMX19_04783at 180.088 kb on + strand, within MPMX19_04783at 180.088 kb on + strand, within MPMX19_04783at 180.088 kb on + strand, within MPMX19_04783at 180.088 kb on + strand, within MPMX19_04783at 180.088 kb on + strand, within MPMX19_04783at 180.088 kb on + strand, within MPMX19_04783at 180.089 kb on - strand, within MPMX19_04783at 180.089 kb on - strand, within MPMX19_04783at 180.089 kb on - strand, within MPMX19_04783at 180.089 kb on - strand, within MPMX19_04783at 180.089 kb on - strand, within MPMX19_04783at 180.089 kb on - strand, within MPMX19_04783at 180.089 kb on - strand, within MPMX19_04783at 180.136 kb on + strand, within MPMX19_04783at 180.136 kb on + strand, within MPMX19_04783at 180.136 kb on + strand, within MPMX19_04783at 180.136 kb on + strand, within MPMX19_04783at 180.136 kb on + strand, within MPMX19_04783at 180.136 kb on + strand, within MPMX19_04783at 180.136 kb on + strand, within MPMX19_04783at 180.136 kb on + strand, within MPMX19_04783at 180.137 kb on - strand, within MPMX19_04783at 180.137 kb on - strand, within MPMX19_04783at 180.137 kb on - strand, within MPMX19_04783at 180.137 kb on - strand, within MPMX19_04783at 180.137 kb on - strand, within MPMX19_04783at 180.137 kb on - strand, within MPMX19_04783at 180.137 kb on - strand, within MPMX19_04783at 180.137 kb on - strand, within MPMX19_04783at 180.241 kb on + strand, within MPMX19_04783at 180.242 kb on - strand, within MPMX19_04783at 180.242 kb on - strand, within MPMX19_04783at 180.247 kb on + strand, within MPMX19_04783at 180.248 kb on - strand, within MPMX19_04783at 180.322 kb on + strand, within MPMX19_04783at 180.322 kb on + strand, within MPMX19_04783at 180.322 kb on + strand, within MPMX19_04783at 180.323 kb on - strand, within MPMX19_04783at 180.323 kb on - strand, within MPMX19_04783at 180.323 kb on - strand, within MPMX19_04783at 180.340 kb on + strand, within MPMX19_04783at 180.340 kb on + strand, within MPMX19_04783at 180.656 kb on + strandat 180.656 kb on + strandat 180.656 kb on + strandat 180.656 kb on + strandat 180.656 kb on + strandat 180.656 kb on + strandat 180.656 kb on + strandat 180.656 kb on + strandat 180.657 kb on - strandat 180.657 kb on - strandat 180.657 kb on - strandat 180.657 kb on - strandat 180.657 kb on - strandat 180.657 kb on - strandat 180.845 kb on + strand, within MPMX19_04784at 180.845 kb on + strand, within MPMX19_04784at 181.041 kb on + strand, within MPMX19_04784at 181.041 kb on + strand, within MPMX19_04784at 181.042 kb on - strand, within MPMX19_04784at 181.042 kb on - strand, within MPMX19_04784at 181.214 kb on + strand, within MPMX19_04784at 181.214 kb on + strand, within MPMX19_04784at 181.215 kb on - strand, within MPMX19_04784at 181.580 kb on + strand, within MPMX19_04784at 181.581 kb on - strand, within MPMX19_04784at 181.581 kb on - strand, within MPMX19_04784at 181.581 kb on - strand, within MPMX19_04784at 182.111 kb on + strand, within MPMX19_04784at 182.111 kb on + strand, within MPMX19_04784at 182.111 kb on + strand, within MPMX19_04784at 182.111 kb on + strand, within MPMX19_04784at 182.111 kb on + strand, within MPMX19_04784at 182.111 kb on + strand, within MPMX19_04784at 182.111 kb on + strand, within MPMX19_04784at 182.111 kb on + strand, within MPMX19_04784at 182.111 kb on + strand, within MPMX19_04784at 182.111 kb on + strand, within MPMX19_04784at 182.111 kb on + strand, within MPMX19_04784at 182.112 kb on - strand, within MPMX19_04784at 182.112 kb on - strand, within MPMX19_04784at 182.112 kb on - strand, within MPMX19_04784at 182.112 kb on - strand, within MPMX19_04784at 182.112 kb on - strand, within MPMX19_04784at 182.112 kb on - strand, within MPMX19_04784at 182.112 kb on - strand, within MPMX19_04784at 182.112 kb on - strand, within MPMX19_04784at 182.112 kb on - strand, within MPMX19_04784at 182.177 kb on + strand, within MPMX19_04784at 182.178 kb on - strand, within MPMX19_04784at 182.178 kb on - strand, within MPMX19_04784at 182.178 kb on - strand, within MPMX19_04784at 182.261 kb on + strand, within MPMX19_04784at 182.261 kb on + strand, within MPMX19_04784at 182.261 kb on + strand, within MPMX19_04784at 182.261 kb on + strand, within MPMX19_04784at 182.261 kb on + strand, within MPMX19_04784at 182.262 kb on - strand, within MPMX19_04784at 182.262 kb on - strand, within MPMX19_04784at 182.262 kb on - strand, within MPMX19_04784at 182.693 kb on + strandat 182.694 kb on - strandat 182.694 kb on - strandat 182.694 kb on - strandat 183.052 kb on + strand, within MPMX19_04785at 183.052 kb on + strand, within MPMX19_04785at 183.191 kb on + strand, within MPMX19_04785at 183.191 kb on + strand, within MPMX19_04785at 183.191 kb on + strand, within MPMX19_04785at 183.191 kb on + strand, within MPMX19_04785at 183.191 kb on + strand, within MPMX19_04785at 183.192 kb on - strand, within MPMX19_04785at 183.192 kb on - strand, within MPMX19_04785at 183.192 kb on - strand, within MPMX19_04785at 183.233 kb on + strand, within MPMX19_04785at 183.337 kb on + strand, within MPMX19_04785at 183.427 kb on + strand, within MPMX19_04785at 183.427 kb on + strand, within MPMX19_04785at 183.427 kb on + strand, within MPMX19_04785at 183.427 kb on + strand, within MPMX19_04785at 183.427 kb on + strand, within MPMX19_04785at 183.427 kb on + strand, within MPMX19_04785at 183.428 kb on - strand, within MPMX19_04785at 183.428 kb on - strand, within MPMX19_04785at 183.428 kb on - strand, within MPMX19_04785at 183.478 kb on + strand, within MPMX19_04785at 183.479 kb on - strand, within MPMX19_04785at 183.479 kb on - strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.620 kb on - strand, within MPMX19_04785at 183.620 kb on - strand, within MPMX19_04785at 183.620 kb on - strand, within MPMX19_04785at 183.620 kb on - strand, within MPMX19_04785at 183.620 kb on - strand, within MPMX19_04785at 183.757 kb on + strand, within MPMX19_04785

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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179,596 + +0.4
179,596 + -2.4
179,597 - -0.7
179,597 - -0.1
179,898 + MPMX19_04783 0.33 +0.4
179,899 + MPMX19_04783 0.33 +0.0
179,899 + MPMX19_04783 0.33 -0.1
179,900 - MPMX19_04783 0.33 -1.2
180,088 + MPMX19_04783 0.54 +1.9
180,088 + MPMX19_04783 0.54 -1.0
180,088 + MPMX19_04783 0.54 -1.7
180,088 + MPMX19_04783 0.54 +0.9
180,088 + MPMX19_04783 0.54 +0.3
180,088 + MPMX19_04783 0.54 -0.3
180,088 + MPMX19_04783 0.54 +0.6
180,088 + MPMX19_04783 0.54 +0.9
180,089 - MPMX19_04783 0.54 -1.4
180,089 - MPMX19_04783 0.54 -1.6
180,089 - MPMX19_04783 0.54 +0.6
180,089 - MPMX19_04783 0.54 -0.2
180,089 - MPMX19_04783 0.54 -0.7
180,089 - MPMX19_04783 0.54 -0.6
180,089 - MPMX19_04783 0.54 -2.8
180,136 + MPMX19_04783 0.59 +2.1
180,136 + MPMX19_04783 0.59 +0.4
180,136 + MPMX19_04783 0.59 +0.9
180,136 + MPMX19_04783 0.59 +0.4
180,136 + MPMX19_04783 0.59 +0.1
180,136 + MPMX19_04783 0.59 +0.3
180,136 + MPMX19_04783 0.59 -0.7
180,136 + MPMX19_04783 0.59 -1.7
180,137 - MPMX19_04783 0.60 -0.1
180,137 - MPMX19_04783 0.60 +1.0
180,137 - MPMX19_04783 0.60 +0.0
180,137 - MPMX19_04783 0.60 -0.2
180,137 - MPMX19_04783 0.60 -0.4
180,137 - MPMX19_04783 0.60 -0.5
180,137 - MPMX19_04783 0.60 +1.9
180,137 - MPMX19_04783 0.60 -0.3
180,241 + MPMX19_04783 0.71 -1.2
180,242 - MPMX19_04783 0.71 -0.7
180,242 - MPMX19_04783 0.71 +0.5
180,247 + MPMX19_04783 0.72 -1.4
180,248 - MPMX19_04783 0.72 -1.1
180,322 + MPMX19_04783 0.80 -0.9
180,322 + MPMX19_04783 0.80 +0.3
180,322 + MPMX19_04783 0.80 -0.1
180,323 - MPMX19_04783 0.81 -0.9
180,323 - MPMX19_04783 0.81 -0.5
180,323 - MPMX19_04783 0.81 -1.0
180,340 + MPMX19_04783 0.82 +0.4
180,340 + MPMX19_04783 0.82 -2.2
180,656 + -1.6
180,656 + -0.5
180,656 + -0.7
180,656 + -0.8
180,656 + +1.0
180,656 + +0.6
180,656 + +0.4
180,656 + +1.6
180,657 - -0.4
180,657 - +0.4
180,657 - +0.5
180,657 - -0.4
180,657 - -2.1
180,657 - -0.8
180,845 + MPMX19_04784 0.16 -1.0
180,845 + MPMX19_04784 0.16 -0.3
181,041 + MPMX19_04784 0.24 -1.8
181,041 + MPMX19_04784 0.24 -0.4
181,042 - MPMX19_04784 0.24 -0.2
181,042 - MPMX19_04784 0.24 -0.5
181,214 + MPMX19_04784 0.32 +0.0
181,214 + MPMX19_04784 0.32 -1.8
181,215 - MPMX19_04784 0.32 +1.2
181,580 + MPMX19_04784 0.48 -1.2
181,581 - MPMX19_04784 0.48 -0.7
181,581 - MPMX19_04784 0.48 -0.6
181,581 - MPMX19_04784 0.48 +1.2
182,111 + MPMX19_04784 0.71 -0.8
182,111 + MPMX19_04784 0.71 +1.0
182,111 + MPMX19_04784 0.71 -0.4
182,111 + MPMX19_04784 0.71 -1.1
182,111 + MPMX19_04784 0.71 -0.8
182,111 + MPMX19_04784 0.71 +0.8
182,111 + MPMX19_04784 0.71 -0.8
182,111 + MPMX19_04784 0.71 -0.1
182,111 + MPMX19_04784 0.71 -0.7
182,111 + MPMX19_04784 0.71 -2.6
182,111 + MPMX19_04784 0.71 -0.8
182,112 - MPMX19_04784 0.72 -0.7
182,112 - MPMX19_04784 0.72 -0.7
182,112 - MPMX19_04784 0.72 +0.3
182,112 - MPMX19_04784 0.72 -1.0
182,112 - MPMX19_04784 0.72 +0.1
182,112 - MPMX19_04784 0.72 -0.8
182,112 - MPMX19_04784 0.72 -0.2
182,112 - MPMX19_04784 0.72 -0.5
182,112 - MPMX19_04784 0.72 -0.6
182,177 + MPMX19_04784 0.74 +0.1
182,178 - MPMX19_04784 0.74 +0.6
182,178 - MPMX19_04784 0.74 -1.3
182,178 - MPMX19_04784 0.74 -1.7
182,261 + MPMX19_04784 0.78 +0.4
182,261 + MPMX19_04784 0.78 -1.9
182,261 + MPMX19_04784 0.78 -0.9
182,261 + MPMX19_04784 0.78 +0.9
182,261 + MPMX19_04784 0.78 -0.8
182,262 - MPMX19_04784 0.78 -1.6
182,262 - MPMX19_04784 0.78 -0.4
182,262 - MPMX19_04784 0.78 +0.0
182,693 + -0.0
182,694 - +0.7
182,694 - +0.6
182,694 - +0.6
183,052 + MPMX19_04785 0.27 +0.2
183,052 + MPMX19_04785 0.27 +0.0
183,191 + MPMX19_04785 0.38 -0.7
183,191 + MPMX19_04785 0.38 +0.5
183,191 + MPMX19_04785 0.38 +0.0
183,191 + MPMX19_04785 0.38 +0.2
183,191 + MPMX19_04785 0.38 -1.6
183,192 - MPMX19_04785 0.38 +0.1
183,192 - MPMX19_04785 0.38 -2.2
183,192 - MPMX19_04785 0.38 +1.9
183,233 + MPMX19_04785 0.42 -1.7
183,337 + MPMX19_04785 0.50 -0.7
183,427 + MPMX19_04785 0.58 -0.3
183,427 + MPMX19_04785 0.58 +0.2
183,427 + MPMX19_04785 0.58 -0.6
183,427 + MPMX19_04785 0.58 +0.0
183,427 + MPMX19_04785 0.58 -1.2
183,427 + MPMX19_04785 0.58 -0.5
183,428 - MPMX19_04785 0.58 -1.1
183,428 - MPMX19_04785 0.58 -0.5
183,428 - MPMX19_04785 0.58 +0.1
183,478 + MPMX19_04785 0.62 -0.2
183,479 - MPMX19_04785 0.62 +0.6
183,479 - MPMX19_04785 0.62 -1.1
183,619 + MPMX19_04785 0.73 -0.6
183,619 + MPMX19_04785 0.73 -1.1
183,619 + MPMX19_04785 0.73 -1.6
183,619 + MPMX19_04785 0.73 +0.3
183,619 + MPMX19_04785 0.73 +0.2
183,619 + MPMX19_04785 0.73 -1.1
183,619 + MPMX19_04785 0.73 -1.4
183,619 + MPMX19_04785 0.73 -0.3
183,620 - MPMX19_04785 0.73 -1.8
183,620 - MPMX19_04785 0.73 -0.1
183,620 - MPMX19_04785 0.73 -0.2
183,620 - MPMX19_04785 0.73 +0.4
183,620 - MPMX19_04785 0.73 -1.0
183,757 + MPMX19_04785 0.85 -1.1

Or see this region's nucleotide sequence