Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04778 and MPMX19_04779 are separated by 304 nucleotides MPMX19_04779 and MPMX19_04780 are separated by 497 nucleotides
MPMX19_04778: MPMX19_04778 - hypothetical protein, at 173,359 to 174,396
_04778
MPMX19_04779: MPMX19_04779 - hypothetical protein, at 174,701 to 175,330
_04779
MPMX19_04780: MPMX19_04780 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical, at 175,828 to 176,574
_04780
Position (kb)
174
175
176 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 173.774 kb on + strand, within MPMX19_04778 at 173.774 kb on + strand, within MPMX19_04778 at 173.774 kb on + strand, within MPMX19_04778 at 173.774 kb on + strand, within MPMX19_04778 at 173.774 kb on + strand, within MPMX19_04778 at 173.774 kb on + strand, within MPMX19_04778 at 173.774 kb on + strand, within MPMX19_04778 at 173.774 kb on + strand, within MPMX19_04778 at 173.774 kb on + strand, within MPMX19_04778 at 173.775 kb on - strand, within MPMX19_04778 at 173.775 kb on - strand, within MPMX19_04778 at 173.775 kb on - strand, within MPMX19_04778 at 173.775 kb on - strand, within MPMX19_04778 at 173.808 kb on - strand, within MPMX19_04778 at 173.861 kb on + strand, within MPMX19_04778 at 173.861 kb on + strand, within MPMX19_04778 at 173.861 kb on + strand, within MPMX19_04778 at 173.861 kb on + strand, within MPMX19_04778 at 173.861 kb on + strand, within MPMX19_04778 at 173.861 kb on + strand, within MPMX19_04778 at 173.862 kb on - strand, within MPMX19_04778 at 173.862 kb on - strand, within MPMX19_04778 at 173.862 kb on - strand, within MPMX19_04778 at 173.862 kb on - strand, within MPMX19_04778 at 173.862 kb on - strand, within MPMX19_04778 at 173.862 kb on - strand, within MPMX19_04778 at 173.862 kb on - strand, within MPMX19_04778 at 173.862 kb on - strand, within MPMX19_04778 at 173.862 kb on - strand, within MPMX19_04778 at 173.862 kb on - strand, within MPMX19_04778 at 173.982 kb on - strand, within MPMX19_04778 at 173.982 kb on - strand, within MPMX19_04778 at 173.982 kb on - strand, within MPMX19_04778 at 174.006 kb on - strand, within MPMX19_04778 at 174.006 kb on - strand, within MPMX19_04778 at 174.006 kb on - strand, within MPMX19_04778 at 174.006 kb on - strand, within MPMX19_04778 at 174.006 kb on - strand, within MPMX19_04778 at 174.006 kb on - strand, within MPMX19_04778 at 174.006 kb on - strand, within MPMX19_04778 at 174.006 kb on - strand, within MPMX19_04778 at 174.006 kb on - strand, within MPMX19_04778 at 174.006 kb on - strand, within MPMX19_04778 at 174.018 kb on + strand, within MPMX19_04778 at 174.018 kb on + strand, within MPMX19_04778 at 174.018 kb on + strand, within MPMX19_04778 at 174.018 kb on + strand, within MPMX19_04778 at 174.018 kb on + strand, within MPMX19_04778 at 174.018 kb on + strand, within MPMX19_04778 at 174.018 kb on + strand, within MPMX19_04778 at 174.018 kb on + strand, within MPMX19_04778 at 174.018 kb on + strand, within MPMX19_04778 at 174.018 kb on + strand, within MPMX19_04778 at 174.018 kb on + strand, within MPMX19_04778 at 174.038 kb on + strand, within MPMX19_04778 at 174.038 kb on + strand, within MPMX19_04778 at 174.038 kb on + strand, within MPMX19_04778 at 174.038 kb on + strand, within MPMX19_04778 at 174.039 kb on - strand, within MPMX19_04778 at 174.039 kb on - strand, within MPMX19_04778 at 174.039 kb on - strand, within MPMX19_04778 at 174.039 kb on - strand, within MPMX19_04778 at 174.039 kb on - strand, within MPMX19_04778 at 174.039 kb on - strand, within MPMX19_04778 at 174.039 kb on - strand, within MPMX19_04778 at 174.039 kb on - strand, within MPMX19_04778 at 174.087 kb on - strand, within MPMX19_04778 at 174.486 kb on + strand at 174.486 kb on + strand at 174.487 kb on - strand at 174.487 kb on - strand at 174.541 kb on + strand at 174.592 kb on - strand at 174.648 kb on + strand at 174.649 kb on - strand at 175.099 kb on + strand, within MPMX19_04779 at 175.099 kb on + strand, within MPMX19_04779 at 175.099 kb on + strand, within MPMX19_04779 at 175.239 kb on + strand, within MPMX19_04779 at 175.399 kb on + strand at 175.400 kb on - strand at 175.547 kb on + strand at 175.547 kb on + strand at 175.548 kb on - strand at 175.548 kb on - strand at 175.548 kb on - strand at 175.548 kb on - strand at 175.629 kb on + strand at 175.629 kb on + strand at 175.629 kb on + strand at 175.629 kb on + strand at 175.630 kb on - strand at 175.630 kb on - strand at 175.630 kb on - strand at 175.630 kb on - strand at 175.630 kb on - strand at 175.630 kb on - strand at 175.630 kb on - strand at 175.630 kb on - strand at 175.630 kb on - strand at 175.630 kb on - strand at 175.630 kb on - strand at 175.918 kb on + strand, within MPMX19_04780 at 175.918 kb on + strand, within MPMX19_04780 at 175.918 kb on + strand, within MPMX19_04780 at 175.919 kb on - strand, within MPMX19_04780 at 175.919 kb on - strand, within MPMX19_04780 at 175.919 kb on - strand, within MPMX19_04780 at 175.919 kb on - strand, within MPMX19_04780 at 175.919 kb on - strand, within MPMX19_04780 at 175.943 kb on + strand, within MPMX19_04780 at 175.944 kb on - strand, within MPMX19_04780 at 175.944 kb on - strand, within MPMX19_04780 at 175.944 kb on - strand, within MPMX19_04780 at 175.973 kb on + strand, within MPMX19_04780 at 175.973 kb on + strand, within MPMX19_04780 at 175.973 kb on + strand, within MPMX19_04780 at 175.973 kb on + strand, within MPMX19_04780 at 175.973 kb on + strand, within MPMX19_04780 at 175.974 kb on - strand, within MPMX19_04780 at 175.974 kb on - strand, within MPMX19_04780 at 175.974 kb on - strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.997 kb on + strand, within MPMX19_04780 at 175.997 kb on - strand, within MPMX19_04780 at 175.997 kb on - strand, within MPMX19_04780 at 175.997 kb on - strand, within MPMX19_04780 at 175.997 kb on - strand, within MPMX19_04780 at 175.997 kb on - strand, within MPMX19_04780 at 176.132 kb on + strand, within MPMX19_04780 at 176.132 kb on + strand, within MPMX19_04780 at 176.133 kb on - strand, within MPMX19_04780 at 176.133 kb on - strand, within MPMX19_04780 at 176.267 kb on + strand, within MPMX19_04780
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 173,774 + MPMX19_04778 0.40 -1.3 173,774 + MPMX19_04778 0.40 -0.6 173,774 + MPMX19_04778 0.40 -1.2 173,774 + MPMX19_04778 0.40 +0.2 173,774 + MPMX19_04778 0.40 -1.3 173,774 + MPMX19_04778 0.40 -0.8 173,774 + MPMX19_04778 0.40 -0.7 173,774 + MPMX19_04778 0.40 +0.4 173,774 + MPMX19_04778 0.40 -2.0 173,775 - MPMX19_04778 0.40 +0.8 173,775 - MPMX19_04778 0.40 -0.8 173,775 - MPMX19_04778 0.40 -0.1 173,775 - MPMX19_04778 0.40 +0.0 173,808 - MPMX19_04778 0.43 +0.5 173,861 + MPMX19_04778 0.48 +0.1 173,861 + MPMX19_04778 0.48 -1.9 173,861 + MPMX19_04778 0.48 -1.3 173,861 + MPMX19_04778 0.48 -0.3 173,861 + MPMX19_04778 0.48 -0.4 173,861 + MPMX19_04778 0.48 -0.4 173,862 - MPMX19_04778 0.48 +0.8 173,862 - MPMX19_04778 0.48 -1.0 173,862 - MPMX19_04778 0.48 +0.2 173,862 - MPMX19_04778 0.48 -1.4 173,862 - MPMX19_04778 0.48 -0.2 173,862 - MPMX19_04778 0.48 -0.2 173,862 - MPMX19_04778 0.48 -0.7 173,862 - MPMX19_04778 0.48 -0.5 173,862 - MPMX19_04778 0.48 -1.4 173,862 - MPMX19_04778 0.48 +1.1 173,982 - MPMX19_04778 0.60 -0.7 173,982 - MPMX19_04778 0.60 -1.7 173,982 - MPMX19_04778 0.60 +0.0 174,006 - MPMX19_04778 0.62 +1.4 174,006 - MPMX19_04778 0.62 -0.9 174,006 - MPMX19_04778 0.62 -1.0 174,006 - MPMX19_04778 0.62 -1.5 174,006 - MPMX19_04778 0.62 +0.1 174,006 - MPMX19_04778 0.62 +0.1 174,006 - MPMX19_04778 0.62 -0.3 174,006 - MPMX19_04778 0.62 -1.0 174,006 - MPMX19_04778 0.62 -0.5 174,006 - MPMX19_04778 0.62 -1.0 174,018 + MPMX19_04778 0.63 -1.6 174,018 + MPMX19_04778 0.63 -1.2 174,018 + MPMX19_04778 0.63 -0.4 174,018 + MPMX19_04778 0.63 +0.6 174,018 + MPMX19_04778 0.63 -0.2 174,018 + MPMX19_04778 0.63 -1.1 174,018 + MPMX19_04778 0.63 -1.7 174,018 + MPMX19_04778 0.63 -0.1 174,018 + MPMX19_04778 0.63 -1.6 174,018 + MPMX19_04778 0.63 -0.7 174,018 + MPMX19_04778 0.63 +0.8 174,038 + MPMX19_04778 0.65 -0.4 174,038 + MPMX19_04778 0.65 +0.0 174,038 + MPMX19_04778 0.65 +0.7 174,038 + MPMX19_04778 0.65 -0.7 174,039 - MPMX19_04778 0.66 +0.6 174,039 - MPMX19_04778 0.66 -0.6 174,039 - MPMX19_04778 0.66 -1.6 174,039 - MPMX19_04778 0.66 +0.3 174,039 - MPMX19_04778 0.66 +1.6 174,039 - MPMX19_04778 0.66 -1.0 174,039 - MPMX19_04778 0.66 -2.2 174,039 - MPMX19_04778 0.66 -0.7 174,087 - MPMX19_04778 0.70 -1.4 174,486 + +0.6 174,486 + -0.2 174,487 - -0.7 174,487 - +0.5 174,541 + -1.4 174,592 - -1.3 174,648 + +0.7 174,649 - -0.9 175,099 + MPMX19_04779 0.63 +0.2 175,099 + MPMX19_04779 0.63 -0.6 175,099 + MPMX19_04779 0.63 -1.9 175,239 + MPMX19_04779 0.85 -1.3 175,399 + -1.2 175,400 - +0.2 175,547 + -1.4 175,547 + -0.5 175,548 - -0.2 175,548 - -0.0 175,548 - -1.7 175,548 - -0.8 175,629 + -0.0 175,629 + +0.5 175,629 + +0.5 175,629 + +1.0 175,630 - -1.0 175,630 - +0.3 175,630 - -1.3 175,630 - -0.8 175,630 - -0.1 175,630 - +0.7 175,630 - -1.2 175,630 - -1.2 175,630 - -1.2 175,630 - +0.8 175,630 - -0.7 175,918 + MPMX19_04780 0.12 +0.6 175,918 + MPMX19_04780 0.12 -0.1 175,918 + MPMX19_04780 0.12 +0.6 175,919 - MPMX19_04780 0.12 +0.5 175,919 - MPMX19_04780 0.12 +1.2 175,919 - MPMX19_04780 0.12 +0.0 175,919 - MPMX19_04780 0.12 -0.3 175,919 - MPMX19_04780 0.12 -1.1 175,943 + MPMX19_04780 0.15 +1.9 175,944 - MPMX19_04780 0.16 -1.4 175,944 - MPMX19_04780 0.16 +0.1 175,944 - MPMX19_04780 0.16 +0.0 175,973 + MPMX19_04780 0.19 +0.1 175,973 + MPMX19_04780 0.19 +0.1 175,973 + MPMX19_04780 0.19 -0.2 175,973 + MPMX19_04780 0.19 -0.8 175,973 + MPMX19_04780 0.19 -1.4 175,974 - MPMX19_04780 0.20 +0.2 175,974 - MPMX19_04780 0.20 -1.1 175,974 - MPMX19_04780 0.20 +0.1 175,996 + MPMX19_04780 0.22 -0.2 175,996 + MPMX19_04780 0.22 -1.4 175,996 + MPMX19_04780 0.22 -0.5 175,996 + MPMX19_04780 0.22 -0.1 175,996 + MPMX19_04780 0.22 +0.3 175,996 + MPMX19_04780 0.22 -1.2 175,996 + MPMX19_04780 0.22 +0.6 175,996 + MPMX19_04780 0.22 -0.1 175,997 + MPMX19_04780 0.23 +0.9 175,997 - MPMX19_04780 0.23 -1.4 175,997 - MPMX19_04780 0.23 +0.8 175,997 - MPMX19_04780 0.23 -1.4 175,997 - MPMX19_04780 0.23 -0.4 175,997 - MPMX19_04780 0.23 -0.5 176,132 + MPMX19_04780 0.41 -0.2 176,132 + MPMX19_04780 0.41 -0.4 176,133 - MPMX19_04780 0.41 -1.7 176,133 - MPMX19_04780 0.41 -1.8 176,267 + MPMX19_04780 0.59 +0.9
Or see this region's nucleotide sequence