Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04771 and MPMX19_04772 are separated by 59 nucleotides MPMX19_04772 and MPMX19_04773 are separated by 495 nucleotides MPMX19_04773 and MPMX19_04774 are separated by 361 nucleotides
MPMX19_04771: MPMX19_04771 - Sialic acid TRAP transporter permease protein SiaT, at 162,147 to 164,039
_04771
MPMX19_04772: MPMX19_04772 - L-threonate dehydrogenase, at 164,099 to 165,016
_04772
MPMX19_04773: MPMX19_04773 - tRNA-Ser, at 165,512 to 165,605
_04773
MPMX19_04774: MPMX19_04774 - hypothetical protein, at 165,967 to 167,016
_04774
Position (kb) 164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 163.509 kb on + strand, within MPMX19_04771 at 163.509 kb on + strand, within MPMX19_04771 at 163.509 kb on + strand, within MPMX19_04771 at 163.509 kb on + strand, within MPMX19_04771 at 163.509 kb on + strand, within MPMX19_04771 at 163.509 kb on + strand, within MPMX19_04771 at 163.536 kb on + strand, within MPMX19_04771 at 163.563 kb on + strand, within MPMX19_04771 at 163.563 kb on + strand, within MPMX19_04771 at 163.563 kb on + strand, within MPMX19_04771 at 163.563 kb on + strand, within MPMX19_04771 at 163.564 kb on - strand, within MPMX19_04771 at 163.564 kb on - strand, within MPMX19_04771 at 163.564 kb on - strand, within MPMX19_04771 at 163.564 kb on - strand, within MPMX19_04771 at 163.839 kb on + strand, within MPMX19_04771 at 163.839 kb on + strand, within MPMX19_04771 at 163.840 kb on - strand, within MPMX19_04771 at 163.840 kb on - strand, within MPMX19_04771 at 163.902 kb on + strand at 163.902 kb on + strand at 163.902 kb on + strand at 163.902 kb on + strand at 163.905 kb on + strand at 163.905 kb on + strand at 163.906 kb on - strand at 163.906 kb on - strand at 163.906 kb on - strand at 163.906 kb on - strand at 163.965 kb on + strand at 163.965 kb on + strand at 163.966 kb on - strand at 163.966 kb on - strand at 164.951 kb on + strand at 164.951 kb on + strand at 164.951 kb on + strand at 164.951 kb on + strand at 164.952 kb on - strand at 165.175 kb on + strand at 165.391 kb on + strand at 165.391 kb on + strand at 165.391 kb on + strand at 165.391 kb on + strand at 165.391 kb on + strand at 165.392 kb on - strand at 165.392 kb on - strand at 165.392 kb on - strand at 165.392 kb on - strand at 165.392 kb on - strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.779 kb on - strand at 165.779 kb on - strand at 165.779 kb on - strand at 165.779 kb on - strand at 165.779 kb on - strand at 165.779 kb on - strand at 165.843 kb on - strand at 165.851 kb on + strand at 165.852 kb on - strand at 165.852 kb on - strand at 165.852 kb on - strand at 165.852 kb on - strand at 165.852 kb on - strand at 165.852 kb on - strand at 165.900 kb on - strand at 165.900 kb on - strand at 165.900 kb on - strand at 165.900 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 163,509 + MPMX19_04771 0.72 -0.5 163,509 + MPMX19_04771 0.72 +0.1 163,509 + MPMX19_04771 0.72 -1.4 163,509 + MPMX19_04771 0.72 -1.0 163,509 + MPMX19_04771 0.72 +1.2 163,509 + MPMX19_04771 0.72 -0.7 163,536 + MPMX19_04771 0.73 -0.6 163,563 + MPMX19_04771 0.75 -0.3 163,563 + MPMX19_04771 0.75 +0.0 163,563 + MPMX19_04771 0.75 -1.6 163,563 + MPMX19_04771 0.75 +0.3 163,564 - MPMX19_04771 0.75 +0.5 163,564 - MPMX19_04771 0.75 -1.4 163,564 - MPMX19_04771 0.75 -0.7 163,564 - MPMX19_04771 0.75 -1.2 163,839 + MPMX19_04771 0.89 -0.5 163,839 + MPMX19_04771 0.89 -0.5 163,840 - MPMX19_04771 0.89 +0.8 163,840 - MPMX19_04771 0.89 +1.0 163,902 + -1.4 163,902 + -2.9 163,902 + -0.5 163,902 + -1.2 163,905 + -1.4 163,905 + -0.1 163,906 - -0.1 163,906 - -1.9 163,906 - -0.5 163,906 - -2.0 163,965 + -1.4 163,965 + -0.5 163,966 - +1.6 163,966 - -1.1 164,951 + -1.0 164,951 + +1.0 164,951 + -0.5 164,951 + +0.0 164,952 - -0.6 165,175 + +0.2 165,391 + -0.1 165,391 + -0.7 165,391 + +0.8 165,391 + -0.3 165,391 + -0.4 165,392 - +1.2 165,392 - -1.3 165,392 - +0.2 165,392 - -1.6 165,392 - -2.3 165,778 + +0.2 165,778 + -2.1 165,778 + -0.0 165,778 + -1.2 165,778 + +0.4 165,778 + +0.0 165,778 + -0.7 165,778 + -0.1 165,779 - +0.6 165,779 - +0.3 165,779 - +0.0 165,779 - -0.3 165,779 - +0.6 165,779 - -1.2 165,843 - -0.8 165,851 + -0.1 165,852 - -1.0 165,852 - +0.9 165,852 - -0.2 165,852 - +0.2 165,852 - +2.3 165,852 - +0.9 165,900 - -1.9 165,900 - -0.9 165,900 - -0.7 165,900 - +0.3
Or see this region's nucleotide sequence